Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

9790476 .. 9790811

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1114300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCAGATTAATGGAGAGAAGGGTTTTGTGGAGGAAGAAGACGGAGCTCGTCTTCTTCTTTGGATTAGCTTTAATGGTGGTTCTCTTTCCTCCCAGCTCCCTACTCAACAGCGAAGGAAAGACTTAATGTCAATTAAGGCGTCGTTCAGCAACATCGCTAACGTGTTGGTCGACTGGAATGATGTCTATGACAGCGATTTCTGCTCTTGGGGTGGGGTTTTCTGCAACAATTTCAGCCTCTTTGTGGCCTCCTTGAATCTGTCTAATCTGAACCTCGACGGAGAGATTTCGCCAACCATCGGAGACTTGGGGAACTTGGAATACATAGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0007275 GO:0008150 GO:0009553 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0010016 GO:0010103 GO:0010374 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0035670 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090558 GO:0090567 GO:0090626 GO:0090698 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

112

Amino Acids

12.3

Weight (kDa)

4.05

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	42 - 76	1.8e-07	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	244, 299
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	127
AluBI	AGCT	3 cut(s)	47, 69, 97
AluI	AGCT	3 cut(s)	47, 69, 97
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	246
AseI	ATTAAT	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	44, 45
Bbv12I	GWGCWC	1 cut(s)	49
BccI	CCATC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	297
BmeRI	GACNNNNNGTC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	44, 45
BsaHI	GRCGYC	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 299
Bse1I	ACTGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	244, 299
BseNI	ACTGG	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	244, 299
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	44, 45
BsuRI	GGCC	1 cut(s)	248
BtgZI	GCGATG	1 cut(s)	139
CseI	GACGC	1 cut(s)	129
CviJI	RGCY	5 cut(s)	47, 69, 97, 237, 248
CviKI_1	RGCY	5 cut(s)	47, 69, 97, 237, 248
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1105I	GACNNNNNGTC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	49
FaiI	YATR	2 cut(s)	189, 326
FblI	GTMKAC	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	248
HgaI	GACGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	270, 302
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	2 cut(s)	145, 281
HpyAV	CCTTC	2 cut(s)	13, 108
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	4, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	44, 102
LpnPI	CCDG	2 cut(s)	107, 160
MaeII	ACGT	1 cut(s)	162
MboII	GAAGA	4 cut(s)	44, 47, 47, 50
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	132, 229
MnlI	CCTC	5 cut(s)	25, 100, 248, 259, 284
MseI	TTAA	4 cut(s)	9, 72, 125, 135
MwoI	GCNNNNNNNGC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	256
PshBI	ATTAAT	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	93
PsrI	GAACNNNNNNTAC	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	9, 72, 125, 135
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	49, 71, 99, 165, 276
SgeI	CNNG	9 cut(s)	60, 106, 175, 187, 219, 265, 287, 319, 328
Sse9I	AATT	2 cut(s)	132, 229
SstI	GAGCTC	1 cut(s)	49
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	171, 276
TasI	AATT	2 cut(s)	132, 229
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	4 cut(s)	9, 72, 125, 135
Tru9I	TTAA	4 cut(s)	9, 72, 125, 135
TspGWI	ACGGA	2 cut(s)	57, 294
VspI	ATTAAT	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.