Rroxscaffold_2G00110800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000383
Physical Location & Seq
Reverse (-)
35287844 .. 35290170
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110800.1

Sequence Viewer

Length: 453 bp
ATGCACGGAGTTAGGGAAGATGACAAAGAAAGTGTTGACTCTTTATTAGAAGGTGGATGGGAGACACAGAAAAAGTTTCTTGTTTCATGGGTTAACGAGAAGATGGATATTCGAGCATCTGCAAATGAAGGGAACCAGATAAGAGCAGCTGAATATGCCCTGAAGTTGGAACTTCTTGCTAAAGTGGCTCTTAAGTATCAGGTTGACTCAGTCAGTCTTGACATCCTCACTGGGAGCCTCGGCGGTCTCCGACGCGCCGTTTTCAGCAGCAGAAGCAGCGGCGTTGTTGGAGTTGATCTCCAGCATGCGCTTGCGACCTCATTGGAGTATATCTGCAGCATCTTCATCCAGAAGGCGTTTTATGCCCTCGGCTTCGGACAAGGTACACTAGTGTCTGGAGAGAGGAGGAGGAGGGATACGACGCGGTCAATTGGCGCTGCTTGGGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.56

Weight (kDa)

6.74

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 255, 424
AciI CCGC 3 cut(s) 243, 279, 424
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 1 cut(s) 166
AflII CTTAAG 1 cut(s) 191
AhlI ACTAGT 1 cut(s) 388
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 56, 251
ApeKI GCWGC 5 cut(s) 146, 267, 276, 336, 437
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 3 cut(s) 257, 310, 437
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BbvI GCAGC 5 cut(s) 158, 279, 288, 348, 424
BccI CCATC 2 cut(s) 51, 97
BceAI ACGGC 1 cut(s) 242
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 56, 251
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 6 cut(s) 147, 268, 277, 280, 337, 438
BlsI GCNGC 6 cut(s) 148, 269, 278, 281, 338, 439
BmiI GGNNCC 2 cut(s) 134, 236
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 125, 348
BmuI ACTGGG 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpmI CTGGAG 2 cut(s) 284, 417
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 238, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 238, 367
BseGI GGATG 3 cut(s) 62, 222, 345
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 3 cut(s) 418, 421, 424
BseXI GCAGC 5 cut(s) 158, 279, 288, 348, 424
Bsh1236I CGCG 2 cut(s) 255, 424
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 56, 251
Bso31I GGTCTC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 3 cut(s) 243, 279, 424
BspCNI CTCAG 1 cut(s) 221
BspFNI CGCG 2 cut(s) 255, 424
BspLI GGNNCC 2 cut(s) 134, 236
BspMAI CTGCAG 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 238, 367
BssMI GATC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 306, 312
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 3 cut(s) 62, 222, 345
BstFNI CGCG 2 cut(s) 255, 424
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 3 cut(s) 257, 310, 437
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 56, 251
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 5 cut(s) 155, 185, 273, 276, 362
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 334
BstUI CGCG 2 cut(s) 255, 424
BstV1I GCAGC 5 cut(s) 158, 279, 288, 348, 424
BsuI GTATCC 1 cut(s) 409
BtsCI GGATG 3 cut(s) 62, 222, 345
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 306, 312
CfoI GCGC 3 cut(s) 257, 310, 437
CseI GACGC 2 cut(s) 261, 430
Csp6I GTAC 1 cut(s) 384
CviAII CATG 2 cut(s) 87, 305
CviJI RGCY 4 cut(s) 149, 188, 237, 372
CviKI_1 RGCY 4 cut(s) 149, 188, 237, 372
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 182
FaeI CATG 2 cut(s) 90, 308
FaiI YATR 5 cut(s) 88, 156, 306, 330, 363
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 86, 304
Fnu4HI GCNGC 6 cut(s) 147, 268, 277, 280, 337, 438
FokI GGATG 3 cut(s) 69, 209, 332
Fsp4HI GCNGC 6 cut(s) 147, 268, 277, 280, 337, 438
FspBI CTAG 1 cut(s) 389
GlaI GCGC 3 cut(s) 256, 309, 436
GluI GCNGC 6 cut(s) 147, 268, 277, 280, 337, 438
GsuI CTGGAG 2 cut(s) 284, 417
HaeII RGCGCY 1 cut(s) 438
HgaI GACGC 2 cut(s) 261, 430
HhaI GCGC 3 cut(s) 257, 310, 437
Hin1II CATG 2 cut(s) 90, 308
Hin6I GCGC 3 cut(s) 255, 308, 435
HinP1I GCGC 3 cut(s) 255, 308, 435
HincII GTYRAC 3 cut(s) 37, 94, 205
HindII GTYRAC 3 cut(s) 37, 94, 205
HinfI GANTC 2 cut(s) 38, 206
HpaI GTTAAC 1 cut(s) 94
Hpy166II GTNNAC 4 cut(s) 37, 94, 205, 386
Hpy188I TCNGA 2 cut(s) 251, 377
Hpy188III TCNNGA 3 cut(s) 218, 349, 396
Hpy8I GTNNAC 4 cut(s) 37, 94, 205, 386
Hpy99I CGWCG 2 cut(s) 255, 424
HpyAV CCTTC 3 cut(s) 44, 122, 346
HpyCH4V TGCA 3 cut(s) 4, 122, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 185, 273, 276, 362
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 2 cut(s) 90, 308
HspAI GCGC 3 cut(s) 255, 308, 435
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 7 cut(s) 149, 173, 185, 216, 314, 362, 381
Lsp1109I GCAGC 5 cut(s) 158, 279, 288, 348, 424
LweI GCATC 2 cut(s) 125, 348
MaeI CTAG 1 cut(s) 389
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 29, 112, 334
MfeI CAATTG 1 cut(s) 429
MluCI AATT 2 cut(s) 429, 446
MlyI GAGTC 2 cut(s) 32, 200
MmeI TCCRAC 3 cut(s) 147, 268, 274
MnlI CCTC 8 cut(s) 236, 248, 328, 377, 396, 399, 402, 405
MseI TTAA 2 cut(s) 93, 192
MspA1I CMGCKG 2 cut(s) 149, 279
MspCI CTTAAG 1 cut(s) 191
MunI CAATTG 1 cut(s) 429
MvnI CGCG 2 cut(s) 255, 424
MwoI GCNNNNNNNGC 5 cut(s) 155, 185, 273, 276, 362
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 90, 308
NlaIV GGNNCC 2 cut(s) 134, 236
NmeAIII GCCGAG 2 cut(s) 219, 348
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PflFI GACNNNGTC 2 cut(s) 209, 424
PkrI GCNGC 6 cut(s) 148, 269, 278, 281, 338, 439
PleI GAGTC 2 cut(s) 32, 200
PpsI GAGTC 2 cut(s) 32, 200
PspN4I GGNNCC 2 cut(s) 134, 236
PstI CTGCAG 1 cut(s) 338
PsyI GACNNNGTC 2 cut(s) 209, 424
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 93, 192
SatI GCNGC 6 cut(s) 147, 268, 277, 280, 337, 438
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 2 cut(s) 32, 200
SetI ASST 5 cut(s) 55, 151, 204, 320, 385
SfaNI GCATC 2 cut(s) 125, 348
SfcI CTRYAG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 388
SphI GCATGC 1 cut(s) 308
Sse9I AATT 2 cut(s) 429, 446
SsiI CCGC 3 cut(s) 243, 279, 424
SspMI CTAG 1 cut(s) 389
TaqI TCGA 1 cut(s) 112
TasI AATT 2 cut(s) 429, 446
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 93, 192
Tru9I TTAA 2 cut(s) 93, 192
TscAI CASTG 1 cut(s) 235
TseI GCWGC 5 cut(s) 146, 267, 276, 336, 437
TspDTI ATGAA 3 cut(s) 75, 141, 334
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 235
Tth111I GACNNNGTC 2 cut(s) 209, 424
Vha464I CTTAAG 1 cut(s) 191
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 308
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.