Rh4AG396700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000383
Physical Location & Seq
Reverse (-)
70192599 .. 70193547
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG396700.1

Sequence Viewer

Length: 702 bp
ATGAAAGAGACCAACGTGGTTCCGGCGAAAAGTACGGAGACCAACGTGATTCGGACGAACAGCATGGAGACCAACGTCGTTCCGGGCATCAGCACAGAGACCAACGTCATTCCAGCGACTACAGAGACCAACATCTTCAGGTCCATCAACAACATCGGTTTCTCATTTCACAACACCCAACCTTCCCGCTCCCTTCAGTCCATCAACAGCGTTTCGCGATCGTCGTTGTCAGTAATGGCCAACCTGGCTGTATCTCAGCTTGAGCCAGCGGAAGAAAAGCAAGGAACGACCGAAGAAAATCCTGAGGAACAAGGCAATCCACCTGCCTATCGCTGGTGGGCTGATCGCGATTATCTCGGAAACAAATACACTCAGATTGGTAACGGGGACTCATACTCGAGAGTACCGAGGGTGCTGGAGCTGAGTTACCCAGAGGCAGTATCACGCTATGCCCTTGCTCCCGAATTCGTCCCTTCTTCTTCAACTGCCTGTGACCAGCACCAGCACCAGCATCAACCTCCAAAGCGTCCTTCACCACTCTACAAGACGGTATTATGTCGGTACAAAAGTTCTTGCTCGAAGGGAGACGGGTGTAACTTTGCCCATACTCTTCACGAGATTCGTAGGACACTCGTGTATGACAGAGATTGCAAGTTCGGAAGCCGTTGTCCGTATGGCCGTAATTGCTTTTACCGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.27

Weight (kDa)

8.44

Isoelectric Point (pI)

65.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 2 cut(s) 217, 348
AciI CCGC 2 cut(s) 187, 269
AcoI YGGCCR 2 cut(s) 237, 676
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 2 cut(s) 121, 179
AfaI GTAC 3 cut(s) 34, 405, 563
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 1 cut(s) 483
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 2 cut(s) 259, 421
AluI AGCT 2 cut(s) 259, 421
Alw26I GTCTC 6 cut(s) 2, 32, 62, 92, 119, 579
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 2 cut(s) 237, 676
ApoI RAATTY 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 525
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 303
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BalI TGGCCA 1 cut(s) 239
BauI CACGAG 2 cut(s) 614, 632
BccI CCATC 2 cut(s) 152, 209
BceAI ACGGC 2 cut(s) 648, 663
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 6 cut(s) 2, 32, 62, 92, 119, 579
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 331
BglI GCCNNNNNGGC 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 84, 245
Bme18I GGWCC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 84, 245
BmsI GCATC 2 cut(s) 96, 520
BoxI GACNNNNGTC 2 cut(s) 74, 104
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 84
BsaI GGTCTC 5 cut(s) 2, 32, 62, 92, 119
BsaJI CCNNGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse21I CCTNAGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 4 cut(s) 269, 294, 386, 413
Bsh1236I CGCG 2 cut(s) 217, 348
Bsh1285I CGRYCG 2 cut(s) 221, 291
BshFI GGCC 2 cut(s) 239, 678
BsiEI CGRYCG 2 cut(s) 221, 291
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 2 cut(s) 23, 83
BslFI GGGAC 2 cut(s) 401, 455
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 6 cut(s) 2, 32, 62, 92, 119, 579
BsmBI CGTCTC 1 cut(s) 579
BsmFI GGGAC 2 cut(s) 401, 455
BsnI GGCC 2 cut(s) 239, 678
Bso31I GGTCTC 5 cut(s) 2, 32, 62, 92, 119
BsoBI CYCGRG 1 cut(s) 397
Bsp143I GATC 2 cut(s) 218, 343
Bsp68I TCGCGA 2 cut(s) 217, 348
BspACI CCGC 2 cut(s) 187, 269
BspANI GGCC 2 cut(s) 239, 678
BspCNI CTCAG 4 cut(s) 268, 295, 385, 414
BspFNI CGCG 2 cut(s) 217, 348
BspLI GGNNCC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 331
BspTNI GGTCTC 5 cut(s) 2, 32, 62, 92, 119
BsrBI CCGCTC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 2 cut(s) 218, 343
BssSI CACGAG 2 cut(s) 614, 632
Bst2BI CACGAG 2 cut(s) 614, 632
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 550, 695
Bst6I CTCTTC 1 cut(s) 615
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 4 cut(s) 255, 303, 372, 422
BstFNI CGCG 2 cut(s) 217, 348
BstKTI GATC 2 cut(s) 221, 346
BstMAI GTCTC 6 cut(s) 2, 32, 62, 92, 119, 579
BstMBI GATC 2 cut(s) 218, 343
BstMCI CGRYCG 2 cut(s) 221, 291
BstMWI GCNNNNNNNGC 2 cut(s) 245, 684
BstNI CCWGG 1 cut(s) 245
BstPAI GACNNNNGTC 2 cut(s) 74, 104
BstSCI CCNGG 2 cut(s) 82, 243
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 2 cut(s) 217, 348
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 239, 678
BtuMI TCGCGA 2 cut(s) 217, 348
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 141
CseI GACGC 1 cut(s) 515
Csp6I GTAC 3 cut(s) 33, 404, 562
CviAII CATG 1 cut(s) 64
CviJI RGCY 8 cut(s) 239, 248, 259, 265, 341, 421, 663, 678
CviKI_1 RGCY 8 cut(s) 239, 248, 259, 265, 341, 421, 663, 678
CviQI GTAC 3 cut(s) 33, 404, 562
DdeI CTNAG 4 cut(s) 255, 303, 372, 422
DpnI GATC 2 cut(s) 220, 345
DpnII GATC 2 cut(s) 218, 343
EaeI YGGCCR 2 cut(s) 237, 676
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco31I GGTCTC 5 cut(s) 2, 32, 62, 92, 119
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 2 cut(s) 121, 179
Eco81I CCTNAGG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 579
FaeI CATG 1 cut(s) 67
FaiI YATR 7 cut(s) 65, 394, 450, 556, 606, 639, 675
FaqI GGGAC 2 cut(s) 401, 455
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 2 cut(s) 239, 678
HapII CCGG 2 cut(s) 23, 83
HgaI GACGC 1 cut(s) 515
Hin1II CATG 1 cut(s) 67
HinfI GANTC 3 cut(s) 49, 389, 619
HpaII CCGG 2 cut(s) 23, 83
HphI GGTGA 1 cut(s) 525
Hpy188I TCNGA 4 cut(s) 54, 359, 375, 659
Hpy188III TCNNGA 6 cut(s) 216, 302, 347, 399, 461, 614
Hpy99I CGWCG 2 cut(s) 80, 226
HpyAV CCTTC 5 cut(s) 192, 203, 483, 540, 574
HpyCH4III ACNGT 2 cut(s) 550, 695
HpyCH4IV ACGT 4 cut(s) 15, 45, 75, 105
HpyCH4V TGCA 1 cut(s) 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 684
HpyF3I CTNAG 4 cut(s) 255, 303, 372, 422
HpySE526I ACGT 4 cut(s) 15, 45, 75, 105
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 2 cut(s) 218, 343
LmnI GCTCC 3 cut(s) 194, 418, 463
LweI GCATC 2 cut(s) 96, 520
MaeII ACGT 4 cut(s) 15, 45, 75, 105
MaeIII GTNAC 4 cut(s) 380, 425, 491, 593
MalI GATC 2 cut(s) 220, 345
MbiI CCGCTC 1 cut(s) 189
MboI GATC 2 cut(s) 218, 343
MboII GAAGA 6 cut(s) 127, 284, 305, 468, 471, 602
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 2 cut(s) 464, 682
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 298, 402, 427, 528
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 23, 83
MspR9I CCNGG 2 cut(s) 84, 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 2 cut(s) 217, 348
MwoI GCNNNNNNNGC 2 cut(s) 245, 684
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 218, 343
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 491
NruI TCGCGA 2 cut(s) 217, 348
PaeR7I CTCGAG 1 cut(s) 397
PaqCI CACCTGC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 2 cut(s) 221, 404
PfeI GAWTC 2 cut(s) 49, 619
Ple19I CGATCG 1 cut(s) 221
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PshAI GACNNNNGTC 2 cut(s) 74, 104
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 141
PvuI CGATCG 1 cut(s) 221
RruI TCGCGA 2 cut(s) 217, 348
RsaI GTAC 3 cut(s) 34, 405, 563
RsaNI GTAC 3 cut(s) 33, 404, 562
Sau3AI GATC 2 cut(s) 218, 343
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 84, 245
SfaNI GCATC 2 cut(s) 96, 520
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 397
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 397
SmlI CTYRAG 2 cut(s) 260, 397
SmoI CTYRAG 2 cut(s) 260, 397
Sse9I AATT 2 cut(s) 464, 682
SsiI CCGC 2 cut(s) 187, 269
StyD4I CCNGG 2 cut(s) 82, 243
TaaI ACNGT 2 cut(s) 550, 695
TaiI ACGT 4 cut(s) 18, 48, 78, 108
TaqI TCGA 2 cut(s) 398, 578
TaqII GACCGA 1 cut(s) 305
TasI AATT 2 cut(s) 464, 682
TfiI GAWTC 2 cut(s) 49, 619
TseFI GTSAC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 50, 660
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.