Rorug01G0389700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
50061603 .. 50062532
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0389700.1

Sequence Viewer

Length: 624 bp
ATGGATATATCAGACAATAAGCTTGGTGGAGATATACCATCACAGGTCATCGGTCTGTCCTCCTTCTCTCTCTTGCTCAACTTATCGCAAAACTCGCTAACTGGCATTCTGCCTGTGGAAGTGGGTAAGCTGAAGAATATCAATACACTGGACATCTCTGATAATAATTTGACCGGAGGAATTCCAGAAATTATTGGAGGCTGTTTGAGCCTTGAATTTCTTTACCTACAAGGGAACCACTTTCAAGGAATCATGCCTTCTTCTTTGGCTGCTTTGAGAGTGATCATAGCTCTTTATTGGAGGAGAAAAACTCAAAAGAATAAACCGCTATCTGCAGTGTCATCAATCAAATTCCTTCCAAAGGTTTCATACCAGACACTTCATCAAGCTACTGGCGGATTCTCTCTGAGCAATCAAATTGGATCAGGCGGTTTTGGCTCTGTATACAAAGGGATTATTGATCAAGAAGAAAACAATGTTGTTGCCATAAAGGTCCTCAACCTTCAAGAGAAAGGAGCTTCCAAGAGTTTTGTGGCAGAATGCAATATATGCACTGAGAAATATCCGGCACAGGAACCTTGTGAAGATCTTAACATGTTGCTCCAGCACAGATTACAATGGTAA

Protein Analysis

207

Amino Acids

22.55

Weight (kDa)

6.82

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 26 - 81 3.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 444
AciI CCGC 3 cut(s) 326, 396, 429
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 3 cut(s) 180, 215, 350
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 594
AgsI TTSAA 3 cut(s) 215, 245, 506
AluBI AGCT 5 cut(s) 22, 130, 290, 389, 518
AluI AGCT 5 cut(s) 22, 130, 290, 389, 518
AlwI GGATC 1 cut(s) 430
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 3 cut(s) 180, 215, 350
AspS9I GGNCC 1 cut(s) 493
AvaII GGWCC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 46
BclI TGATCA 2 cut(s) 282, 460
BfmI CTRYAG 1 cut(s) 333
BglII AGATCT 1 cut(s) 586
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 2 cut(s) 236, 576
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 587
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 3 cut(s) 106, 153, 397
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 398, 546
BseNI ACTGG 3 cut(s) 106, 153, 397
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 174, 566
BslI CCNNNNNNNGG 1 cut(s) 361
BsmI GAATGC 2 cut(s) 105, 545
Bsp143I GATC 4 cut(s) 282, 422, 460, 586
BspACI CCGC 3 cut(s) 326, 396, 429
BspCNI CTCAG 2 cut(s) 399, 547
BspLI GGNNCC 2 cut(s) 236, 576
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 430
BsrI ACTGG 3 cut(s) 106, 153, 397
BssMI GATC 4 cut(s) 282, 422, 460, 586
BssNAI GTATAC 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 445
BstAPI GCANNNNNTGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 407, 555
BstENI CCTNNNNNAGG 1 cut(s) 359
BstKTI GATC 4 cut(s) 285, 425, 463, 589
BstMBI GATC 4 cut(s) 282, 422, 460, 586
BstMWI GCNNNNNNNGC 4 cut(s) 94, 207, 435, 549
BstNSI RCATGY 1 cut(s) 598
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BstZ17I GTATAC 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 146, 342, 552
Cfr13I GGNCC 1 cut(s) 493
CviAII CATG 2 cut(s) 253, 595
CviJI RGCY 9 cut(s) 22, 130, 201, 210, 269, 290, 389, 438, 518
CviKI_1 RGCY 9 cut(s) 22, 130, 201, 210, 269, 290, 389, 438, 518
DdeI CTNAG 2 cut(s) 407, 555
DpnI GATC 4 cut(s) 284, 424, 462, 588
DpnII GATC 4 cut(s) 282, 422, 460, 586
EciI GGCGGA 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 180
FaeI CATG 2 cut(s) 256, 598
FatI CATG 2 cut(s) 252, 594
FbaI TGATCA 2 cut(s) 282, 460
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 587
HapII CCGG 2 cut(s) 174, 566
Hin1II CATG 2 cut(s) 256, 598
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 249, 399
HpaII CCGG 2 cut(s) 174, 566
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 13, 160, 408
Hpy188III TCNNGA 3 cut(s) 185, 464, 506
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 4 cut(s) 73, 267, 365, 512
HpyCH4V TGCA 3 cut(s) 335, 543, 552
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 207, 435, 549
HpyF3I CTNAG 2 cut(s) 407, 555
Hsp92II CATG 2 cut(s) 256, 598
Ksp22I TGATCA 2 cut(s) 282, 460
Kzo9I GATC 4 cut(s) 282, 422, 460, 586
LmnI GCTCC 2 cut(s) 515, 606
Lsp1109I GCAGC 1 cut(s) 256
MalI GATC 4 cut(s) 284, 424, 462, 588
MboI GATC 4 cut(s) 282, 422, 460, 586
MboII GAAGA 4 cut(s) 145, 252, 479, 596
MflI RGATCY 1 cut(s) 586
MluCI AATT 6 cut(s) 166, 180, 189, 215, 350, 417
MnlI CCTC 5 cut(s) 70, 170, 191, 294, 506
MseI TTAA 1 cut(s) 591
MspI CCGG 2 cut(s) 174, 566
Mva1269I GAATGC 2 cut(s) 105, 545
MwoI GCNNNNNNNGC 4 cut(s) 94, 207, 435, 549
NdeII GATC 4 cut(s) 282, 422, 460, 586
NlaIII CATG 2 cut(s) 256, 598
NlaIV GGNNCC 2 cut(s) 236, 576
NspI RCATGY 1 cut(s) 598
PciI ACATGT 1 cut(s) 594
PctI GAATGC 2 cut(s) 105, 545
PfeI GAWTC 2 cut(s) 249, 399
PkrI GCNGC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 493
PscI ACATGT 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 236, 576
PspPI GGNCC 1 cut(s) 493
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 586
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 4 cut(s) 282, 422, 460, 586
Sau96I GGNCC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 493
Sse9I AATT 6 cut(s) 166, 180, 189, 215, 350, 417
SsiI CCGC 3 cut(s) 326, 396, 429
TaqII GACCGA 1 cut(s) 41
TasI AATT 6 cut(s) 166, 180, 189, 215, 350, 417
TfiI GAWTC 2 cut(s) 249, 399
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 3 cut(s) 153, 342, 559
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 357, 371
TspRI CASTG 3 cut(s) 153, 342, 559
VpaK11BI GGWCC 1 cut(s) 493
XagI CCTNNNNNAGG 1 cut(s) 359
XapI RAATTY 3 cut(s) 180, 215, 350
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.