Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

65426423 .. 65428004

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG408200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACCACAGCTCCGAGCTCCAGTACCTCTGCACCAATGGAGGCCGAGAGCAACCCAGGAGCAGAGAACGGCATCAACCTCCTCCTTCCGGCGACCGGACTCACCTTGGTCATCTCGATCAACGTCACTCCGGCGGCCACTTCGAGCTCCAAAGCACCTAGCTCCTCCTCTGCAACAATGGCGGCCAACCTTGTTCCGGCGACCGGAGCCGTCGCTCACACCAAAGTTGGCCCGTCGGAGGCCGTTTCGGAGACCAAAGCTCCGAGCTCCTCCTCTGCAACAATGGCGGCCAACCTGGTTCAGGCTACCGGAGCCGCCGTTCACACCAAAGCTGGCCCGTCGGAGGCCGTTCCGGCGACCAAAACTCCGAGCTCCTCCTCTGCAACAATGGCGGCCAACCTGGTTCAGGCTACCGGAGCCGCCGTTCACACCAAAGCTGGCCCGTCGGAGGCCGTTCCGGCGACGAAAGCTCCGAGCTCCTCCTCTGCAACAATGGCGGCCAACCTGGTTCCGGCGACCGGAACCGTCGCTCACACCAAAGCTGGCCAGTCGGAGAACCCTGAGCAGCTCAACCTGGCCCCTCCGTCGTCTCCAGAACGCGCAAACCACCTGTACAAAACGAGGTTATGCGTGTATGATCGGGAGAATTGCCCCGACGGAGAGAACTGCGAATTTGCGCACAGCGAGGCGGAGATTCGCCTGCCAACACGGCTCATCGACGGCGTATGCAGATACGGGGAAGGATGTCCGTACGGAGCCAGATGTTTCTACCGGTATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

260

Amino Acids

26.23

Weight (kDa)

6.38

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	678
AccII	CGCG	1 cut(s)	600
AciI	CCGC	8 cut(s)	134, 182, 287, 315, 392, 420, 497, 689
AcoI	YGGCCR	6 cut(s)	135, 183, 288, 393, 498, 544
AcsI	RAATTY	1 cut(s)	671
AfaI	GTAC	3 cut(s)	25, 614, 752
AgeI	ACCGGT	1 cut(s)	771
AjnI	CCWGG	5 cut(s)	55, 294, 399, 504, 573
AloI	GAACNNNNNNTCC	4 cut(s)	303, 335, 408, 440
Alw21I	GWGCWC	5 cut(s)	20, 149, 269, 374, 479
Alw26I	GTCTC	2 cut(s)	245, 594
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	1 cut(s)	671
AsiGI	ACCGGT	1 cut(s)	771
AspLEI	GCGC	2 cut(s)	602, 679
AspS9I	GGNCC	4 cut(s)	230, 335, 440, 577
AsuHPI	GGTGA	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	546
BanII	GRGCYC	5 cut(s)	20, 149, 269, 374, 479
Bbv12I	GWGCWC	5 cut(s)	20, 149, 269, 374, 479
BbvI	GCAGC	1 cut(s)	577
BceAI	ACGGC	9 cut(s)	85, 194, 227, 302, 332, 407, 437, 725, 736
BciT130I	CCWGG	5 cut(s)	57, 296, 401, 506, 575
BcoDI	GTCTC	2 cut(s)	245, 594
BfaI	CTAG	1 cut(s)	159
BglI	GCCNNNNNGGC	3 cut(s)	353, 458, 709
BisI	GCNGC	8 cut(s)	135, 183, 288, 315, 393, 420, 498, 566
BlsI	GCNGC	8 cut(s)	136, 184, 289, 316, 394, 421, 499, 567
Bme1390I	CCNGG	5 cut(s)	57, 296, 401, 506, 575
BmgT120I	GGNCC	4 cut(s)	230, 335, 440, 577
BmiI	GGNNCC	7 cut(s)	208, 313, 418, 510, 523, 579, 757
BmrFI	CCNGG	5 cut(s)	57, 296, 401, 506, 575
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	4, 576
Bpu10I	CCTNAGC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	55, 105
BsaWI	WCCGGW	6 cut(s)	95, 203, 308, 413, 518, 771
Bse118I	RCCGGY	1 cut(s)	771
Bse1I	ACTGG	2 cut(s)	21, 547
BseBI	CCWGG	5 cut(s)	57, 296, 401, 506, 575
BseDI	CCNNGG	2 cut(s)	55, 105
BseGI	GGATG	1 cut(s)	749
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	21, 547
BseRI	GAGGAG	9 cut(s)	71, 154, 157, 259, 262, 364, 367, 469, 472
BseXI	GCAGC	1 cut(s)	577
BsgI	GTGCAG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	600
Bsh1285I	CGRYCG	3 cut(s)	96, 204, 519
BshTI	ACCGGT	1 cut(s)	771
BsiEI	CGRYCG	3 cut(s)	96, 204, 519
BsiHKAI	GWGCWC	5 cut(s)	20, 149, 269, 374, 479
BsiWI	CGTACG	1 cut(s)	750
BsmAI	GTCTC	2 cut(s)	245, 594
BsmBI	CGTCTC	1 cut(s)	594
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	5 cut(s)	20, 149, 269, 374, 479
Bsp1407I	TGTACA	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	117, 637
BspACI	CCGC	8 cut(s)	134, 182, 287, 315, 392, 420, 497, 689
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	7 cut(s)	208, 313, 418, 510, 523, 579, 757
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	771
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	21, 547
BssAI	RCCGGY	1 cut(s)	771
BssECI	CCNNGG	2 cut(s)	55, 105
BssMI	GATC	2 cut(s)	117, 637
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	5 cut(s)	57, 296, 401, 506, 575
Bst4CI	ACNGT	1 cut(s)	526
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	4 cut(s)	334, 439, 544, 701
BstDEI	CTNAG	1 cut(s)	561
BstENI	CCTNNNNNAGG	2 cut(s)	299, 404
BstF5I	GGATG	1 cut(s)	749
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	2 cut(s)	602, 679
BstKTI	GATC	2 cut(s)	120, 640
BstMAI	GTCTC	2 cut(s)	245, 594
BstMBI	GATC	2 cut(s)	117, 637
BstMCI	CGRYCG	3 cut(s)	96, 204, 519
BstNI	CCWGG	5 cut(s)	57, 296, 401, 506, 575
BstSCI	CCNGG	5 cut(s)	55, 294, 399, 504, 573
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	749
Cac8I	GCNNGC	4 cut(s)	334, 439, 544, 701
CfoI	GCGC	2 cut(s)	602, 679
Cfr10I	RCCGGY	1 cut(s)	771
Cfr13I	GGNCC	4 cut(s)	230, 335, 440, 577
CsiI	ACCWGGT	3 cut(s)	294, 399, 504
Csp6I	GTAC	3 cut(s)	24, 613, 751
CspAI	ACCGGT	1 cut(s)	771
CviQI	GTAC	3 cut(s)	24, 613, 751
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	2 cut(s)	119, 639
DpnII	GATC	2 cut(s)	117, 637
EaeI	YGGCCR	6 cut(s)	135, 183, 288, 393, 498, 544
EciI	GGCGGA	1 cut(s)	704
Ecl136II	GAGCTC	5 cut(s)	18, 147, 267, 372, 477
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	5 cut(s)	20, 149, 269, 374, 479
Eco31I	GGTCTC	1 cut(s)	245
Eco53kI	GAGCTC	5 cut(s)	18, 147, 267, 372, 477
EcoICRI	GAGCTC	5 cut(s)	18, 147, 267, 372, 477
EcoNI	CCTNNNNNAGG	2 cut(s)	299, 404
EcoRII	CCWGG	5 cut(s)	55, 294, 399, 504, 573
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	5 cut(s)	20, 149, 269, 374, 479
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	594
FaiI	YATR	3 cut(s)	628, 636, 727
Fnu4HI	GCNGC	8 cut(s)	135, 183, 288, 315, 393, 420, 498, 566
FokI	GGATG	1 cut(s)	756
FriOI	GRGCYC	5 cut(s)	20, 149, 269, 374, 479
Fsp4HI	GCNGC	8 cut(s)	135, 183, 288, 315, 393, 420, 498, 566
FspBI	CTAG	1 cut(s)	159
FspI	TGCGCA	1 cut(s)	678
GlaI	GCGC	2 cut(s)	601, 678
GluI	GCNGC	8 cut(s)	135, 183, 288, 315, 393, 420, 498, 566
GsuI	CTGGAG	2 cut(s)	4, 576
HhaI	GCGC	2 cut(s)	602, 679
Hin6I	GCGC	2 cut(s)	600, 677
HinP1I	GCGC	2 cut(s)	600, 677
HinfI	GANTC	2 cut(s)	99, 694
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	322, 427
Hpy188I	TCNGA	9 cut(s)	15, 238, 250, 264, 343, 369, 448, 474, 553
Hpy188III	TCNNGA	3 cut(s)	115, 593, 641
Hpy8I	GTNNAC	2 cut(s)	322, 427
Hpy99I	CGWCG	9 cut(s)	215, 238, 343, 448, 466, 530, 589, 659, 722
HpyAV	CCTTC	2 cut(s)	95, 734
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	6 cut(s)	32, 173, 278, 383, 488, 729
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	123
HspAI	GCGC	2 cut(s)	600, 677
Kzo9I	GATC	2 cut(s)	117, 637
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	1 cut(s)	81
MabI	ACCWGGT	3 cut(s)	294, 399, 504
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	119, 639
MboI	GATC	2 cut(s)	117, 637
MhlI	GDGCHC	5 cut(s)	20, 149, 269, 374, 479
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	2 cut(s)	646, 671
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	4 cut(s)	216, 321, 426, 531
Mox20I	TGGCCA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	546
MspR9I	CCNGG	5 cut(s)	57, 296, 401, 506, 575
MvaI	CCWGG	5 cut(s)	57, 296, 401, 506, 575
MvnI	CGCG	1 cut(s)	600
NdeII	GATC	2 cut(s)	117, 637
NlaIV	GGNNCC	7 cut(s)	208, 313, 418, 510, 523, 579, 757
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	124
NsbI	TGCGCA	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	694
Pfl23II	CGTACG	1 cut(s)	750
PinAI	ACCGGT	1 cut(s)	771
PkrI	GCNGC	8 cut(s)	136, 184, 289, 316, 394, 421, 499, 567
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Psp124BI	GAGCTC	5 cut(s)	20, 149, 269, 374, 479
Psp6I	CCWGG	5 cut(s)	55, 294, 399, 504, 573
PspGI	CCWGG	5 cut(s)	55, 294, 399, 504, 573
PspLI	CGTACG	1 cut(s)	750
PspN4I	GGNNCC	7 cut(s)	208, 313, 418, 510, 523, 579, 757
PspPI	GGNCC	4 cut(s)	230, 335, 440, 577
RsaI	GTAC	3 cut(s)	25, 614, 752
RsaNI	GTAC	3 cut(s)	24, 613, 751
SacI	GAGCTC	5 cut(s)	20, 149, 269, 374, 479
SatI	GCNGC	8 cut(s)	135, 183, 288, 315, 393, 420, 498, 566
Sau3AI	GATC	2 cut(s)	117, 637
Sau96I	GGNCC	4 cut(s)	230, 335, 440, 577
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	5 cut(s)	57, 296, 401, 506, 575
SduI	GDGCHC	5 cut(s)	20, 149, 269, 374, 479
SexAI	ACCWGGT	3 cut(s)	294, 399, 504
SfaNI	GCATC	1 cut(s)	81
Sse9I	AATT	2 cut(s)	646, 671
SsiI	CCGC	8 cut(s)	134, 182, 287, 315, 392, 420, 497, 689
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	5 cut(s)	20, 149, 269, 374, 479
StyD4I	CCNGG	5 cut(s)	55, 294, 399, 504, 573
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	116, 143, 717
TasI	AATT	2 cut(s)	646, 671
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	7 cut(s)	137, 185, 290, 317, 395, 422, 500
TfiI	GAWTC	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	124
TspGWI	ACGGA	4 cut(s)	573, 672, 738, 768
XagI	CCTNNNNNAGG	2 cut(s)	299, 404
XapI	RAATTY	1 cut(s)	671
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.