Rh7DG202700
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000383
Physical Location & Seq
Forward (+)
19159246 .. 19163824
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG202700.1

Sequence Viewer

Length: 372 bp
ATGATCATCTGTGTTACCATATTACACCAGCAAACACTAAGCATCTTCATCGATCTTATCCCACGTGATTTGAGTACTCCAACCCCGCCCATAGCTCCCTCCGTCACCGCTGAGTTTTGGATAGAGAACCTGATCTTGCTGGTCAACAAAATCCAGAGAGCTTGCACAGCTCTCGGTGACCACGGCGAAACCCGCGCATTACAGACTCTTTGGGACTTGCTTCCCTCCATCGCTGTCGTCGGTGGCCAGGTTCATTATGTTGCAAAATGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGGTAAGGATAGATTGGTGCTACTCTTCACTTGTAAATTTAGTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

123

Amino Acids

13.5

Weight (kDa)

6.81

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AccII CGCG 1 cut(s) 195
AciI CCGC 3 cut(s) 86, 108, 193
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 1 cut(s) 358
AcvI CACGTG 1 cut(s) 65
AfaI GTAC 2 cut(s) 76, 366
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 3 cut(s) 95, 161, 170
AluI AGCT 3 cut(s) 95, 161, 170
AoxI GGCC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 97, 188
BalI TGGCCA 1 cut(s) 246
BbrPI CACGTG 1 cut(s) 65
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 4 cut(s) 31, 65, 154, 188
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 368
BmcAI AGTACT 2 cut(s) 76, 366
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 246
BshVI ATCGAT 1 cut(s) 51
BslFI GGGAC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 3, 52, 132
BspACI CCGC 3 cut(s) 86, 108, 193
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 51
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 3 cut(s) 3, 52, 132
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 38, 111
BstDSI CCRYGG 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 176
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 6, 55, 135
BstMBI GATC 3 cut(s) 3, 52, 132
BstMWI GCNNNNNNNGC 2 cut(s) 167, 192
BstNI CCWGG 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 368
BstUI CGCG 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 246
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 163
CciI TCATGA 1 cut(s) 285
CfoI GCGC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 2 cut(s) 75, 365
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 1 cut(s) 286
CviJI RGCY 4 cut(s) 95, 161, 170, 246
CviKI_1 RGCY 4 cut(s) 95, 161, 170, 246
CviQI GTAC 2 cut(s) 75, 365
DdeI CTNAG 2 cut(s) 38, 111
DpnI GATC 3 cut(s) 5, 54, 134
DpnII GATC 3 cut(s) 3, 52, 132
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco72I CACGTG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 289
FaiI YATR 5 cut(s) 20, 92, 258, 287, 370
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 285
FauI CCCGC 2 cut(s) 93, 200
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 295
GlaI GCGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 246
HhaI GCGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 205
HphI GGTGA 2 cut(s) 97, 188
Hpy166II GTNNAC 2 cut(s) 145, 296
Hpy188III TCNNGA 2 cut(s) 154, 286
Hpy8I GTNNAC 2 cut(s) 145, 296
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 165, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 192
HpyF3I CTNAG 2 cut(s) 38, 111
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 52, 132
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 41, 125, 143, 167, 233, 260
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 3 cut(s) 13, 103, 176
MalI GATC 3 cut(s) 5, 54, 134
MboI GATC 3 cut(s) 3, 52, 132
MboII GAAGA 2 cut(s) 37, 339
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 1 cut(s) 358
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 3 cut(s) 109, 235, 311
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 167, 192
NdeII GATC 3 cut(s) 3, 52, 132
NlaIII CATG 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 103, 176
PagI TCATGA 1 cut(s) 285
PleI GAGTC 1 cut(s) 199
PmaCI CACGTG 1 cut(s) 65
PmlI CACGTG 1 cut(s) 65
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 246
PspCI CACGTG 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 176
PspGI CCWGG 1 cut(s) 246
RsaI GTAC 2 cut(s) 76, 366
RsaNI GTAC 2 cut(s) 75, 365
RseI CAYNNNNRTG 1 cut(s) 284
Sau3AI GATC 3 cut(s) 3, 52, 132
ScaI AGTACT 2 cut(s) 76, 366
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 248
SetI ASST 6 cut(s) 67, 97, 132, 163, 172, 252
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 1 cut(s) 358
SsiI CCGC 3 cut(s) 86, 108, 193
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 358
TatI WGTACW 2 cut(s) 74, 364
TseFI GTSAC 2 cut(s) 103, 176
Tsp45I GTSAC 2 cut(s) 103, 176
TspDTI ATGAA 3 cut(s) 37, 242, 274
TspGWI ACGGA 1 cut(s) 91
XapI RAATTY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 295
ZrmI AGTACT 2 cut(s) 76, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.