Rh4BG003000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000383
Physical Location & Seq
Reverse (-)
615050 .. 615322
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG003000.1

Sequence Viewer

Length: 273 bp
ATGACACCTGTTTCTGATCTGGCCCTTGTATCTATGCTCGATGGTGGTGATCGACGTGAGTATTGCAGTGGTGGAAGGCTAGTTTCTCACTCGTCTGCTGGGAGCGGCGGTGTAGGCTGGAAGGCAGATGATGACGATGACGGTGATGCATGGTGGGTCGGATCTGGGCCAAGGTTCATACTCAGCCGGGGGCGGAGCTCTAGGCGGGACGGGTTCTTTTTCTTCCTCGTTAGTGATAGGCGGGGGTTCTCATCCTCTTCCCTATGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.8

Weight (kDa)

5.63

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 5 cut(s) 105, 108, 193, 205, 241
AclWI GGATC 1 cut(s) 169
AjiI CACGTC 1 cut(s) 56
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 169
AoxI GGCC 2 cut(s) 21, 167
AspS9I GGNCC 2 cut(s) 22, 167
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 59, 155
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BccI CCATC 1 cut(s) 35
BcnI CCSGG 1 cut(s) 188
BfaI CTAG 2 cut(s) 80, 201
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 22, 167
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 170, 187
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
BseDI CCNNGG 2 cut(s) 170, 187
BseGI GGATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 23, 169
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 23, 169
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 16, 49, 161
BspACI CCGC 5 cut(s) 105, 108, 193, 205, 241
BspANI GGCC 2 cut(s) 23, 169
BspCNI CTCAG 1 cut(s) 195
BspPI GGATC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 170, 187
BssMI GATC 3 cut(s) 16, 49, 161
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 3 cut(s) 19, 52, 164
BstMBI GATC 3 cut(s) 16, 49, 161
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 2 cut(s) 23, 169
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 22, 167
CviAII CATG 1 cut(s) 150
CviJI RGCY 6 cut(s) 23, 79, 117, 169, 186, 198
CviKI_1 RGCY 6 cut(s) 23, 79, 117, 169, 186, 198
DdeI CTNAG 1 cut(s) 182
DpnI GATC 3 cut(s) 18, 51, 163
DpnII GATC 3 cut(s) 16, 49, 161
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
EciI GGCGGA 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 153
FaiI YATR 4 cut(s) 35, 151, 179, 265
FaqI GGGAC 1 cut(s) 221
FatI CATG 1 cut(s) 149
FauI CCCGC 2 cut(s) 198, 234
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 2 cut(s) 80, 201
GluI GCNGC 1 cut(s) 106
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 23, 169
HapII CCGG 1 cut(s) 187
Hin1II CATG 1 cut(s) 153
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 59, 155
Hpy188I TCNGA 2 cut(s) 16, 161
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 69, 115
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 66, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 153
Kzo9I GATC 3 cut(s) 16, 49, 161
LmnI GCTCC 2 cut(s) 102, 195
LpnPI CCDG 6 cut(s) 5, 21, 84, 103, 150, 200
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 80, 201
MaeII ACGT 1 cut(s) 55
MalI GATC 3 cut(s) 18, 51, 163
MbiI CCGCTC 1 cut(s) 105
MboI GATC 3 cut(s) 16, 49, 161
MboII GAAGA 2 cut(s) 214, 249
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 2 cut(s) 236, 265
Mph1103I ATGCAT 1 cut(s) 151
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 114
NciI CCSGG 1 cut(s) 188
NdeII GATC 3 cut(s) 16, 49, 161
NlaIII CATG 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 151
PkrI GCNGC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 98
PspPI GGNCC 2 cut(s) 22, 167
PsuI RGATCY 1 cut(s) 161
SacI GAGCTC 1 cut(s) 200
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 3 cut(s) 16, 49, 161
Sau96I GGNCC 2 cut(s) 22, 167
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 10, 58, 176, 200
SfaNI GCATC 1 cut(s) 136
SsiI CCGC 5 cut(s) 105, 108, 193, 205, 241
SspMI CTAG 2 cut(s) 80, 201
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 39, 52
TauI GCSGC 1 cut(s) 108
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 73
XspI CTAG 2 cut(s) 80, 201
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.