Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8166860.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

429 .. 668

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8166860.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggctgacgagccctcagtggcaccaacgcaaccgccttctccttcatcctccaattcgcccctcggaaactctgtgatccctatagtgaacaagctccaggacatcttcgcgcagctcggttcccaatccaccatcgagctccctcaggtcgccgtcgtcggcagccagagtagcggcaagtccagtgtgctcgaggcccttgtaggccgcgacttcttgccccgtggctctgaaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

80

Amino Acids

8.22

Weight (kDa)

4.44

Isoelectric Point (pI)

79.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	2 cut(s)	113, 213
AciI	CCGC	3 cut(s)	35, 177, 211
AclWI	GGATC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	97, 118, 142
AluI	AGCT	3 cut(s)	97, 118, 142
Alw21I	GWGCWC	2 cut(s)	144, 195
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	198, 208
ApeKI	GCWGC	2 cut(s)	115, 165
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	15, 144
Bbv12I	GWGCWC	2 cut(s)	144, 195
BbvI	GCAGC	2 cut(s)	127, 177
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	4 cut(s)	116, 166, 178, 211
BlsI	GCNGC	4 cut(s)	117, 167, 179, 212
Bme1390I	CCNGG	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	24, 124
BmrFI	CCNGG	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	64, 226
Bse1I	ACTGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	64, 226
BseGI	GGATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	30, 161
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	127, 177
Bsh1236I	CGCG	2 cut(s)	113, 213
BshFI	GGCC	2 cut(s)	200, 210
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	144, 195
BsiHKCI	CYCGRG	1 cut(s)	194
BsnI	GGCC	2 cut(s)	200, 210
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	15, 144, 195
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	3 cut(s)	35, 177, 211
BspANI	GGCC	2 cut(s)	200, 210
BspCNI	CTCAG	2 cut(s)	29, 160
BspFNI	CGCG	2 cut(s)	113, 213
BspLI	GGNNCC	2 cut(s)	24, 124
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	64, 226
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	16, 147
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	113, 213
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	2 cut(s)	113, 213
BstV1I	GCAGC	2 cut(s)	127, 177
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	200, 210
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	24, 193
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	199
CviJI	RGCY	9 cut(s)	5, 13, 97, 118, 142, 168, 200, 210, 231
CviKI_1	RGCY	9 cut(s)	5, 13, 97, 118, 142, 168, 200, 210, 231
DdeI	CTNAG	2 cut(s)	16, 147
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	15, 144
Eco53kI	GAGCTC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	2 cut(s)	15, 144
FaiI	YATR	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	116, 166, 178, 211
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	2 cut(s)	15, 144
Fsp4HI	GCNGC	4 cut(s)	116, 166, 178, 211
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	4 cut(s)	116, 166, 178, 211
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	200, 210
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	68, 235
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	161, 164
HpyAV	CCTTC	2 cut(s)	48, 54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	16, 147
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	102, 147
LpnPI	CCDG	5 cut(s)	86, 113, 134, 182, 199
Lsp1109I	GCAGC	2 cut(s)	127, 177
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	15, 144, 195
MluCI	AATT	1 cut(s)	55
MnlI	CCTC	5 cut(s)	25, 61, 74, 156, 190
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	113, 213
MwoI	GCNNNNNNNGC	1 cut(s)	174
NdeII	GATC	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	24, 124
PaeR7I	CTCGAG	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	117, 167, 179, 212
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	24, 124
PspPI	GGNCC	1 cut(s)	199
PspXI	VCTCGAGB	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	4 cut(s)	116, 166, 178, 211
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	3 cut(s)	15, 144, 195
SetI	ASST	4 cut(s)	99, 120, 144, 153
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	3 cut(s)	35, 177, 211
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	99
TaqI	TCGA	2 cut(s)	138, 195
TasI	AATT	1 cut(s)	55
TauI	GCSGC	2 cut(s)	180, 213
TscAI	CASTG	2 cut(s)	24, 193
TseI	GCWGC	2 cut(s)	115, 165
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	24, 193
XhoI	CTCGAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.