Rmu_ssc0000204.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000204.1
OG0000383
Physical Location & Seq
Forward (+)
28559 .. 29682
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000204.1_g000009.1.cds

Sequence Viewer

Length: 762 bp
atggaagagaccaacgtcgttccggcgaacagcagcgagactaacgtctctccgaccactgacacagaaacctacgacgtcgtttcggcgaccaataccgaggtcaacgtcattccggcgaccacggagaccaacgacttcagctccgttttctcatattacaatacccaacctcccagctctgagggccaacagcttctagccggcacaaatcaggtcgaaaatgaggcccagtcaactactcgttcctcttgggttgcggggacagctcacttagacggctcaagagaatggatgtcaggcccgtctacttttctctcagcccagtttcagcttacgcctgaggaagaaggatcgactgaagaaaatcctgagcaagaccctgcatatccttggtgggagcatcccgattatatcggaaacaaatacgctgacattggtaacggggaatcgtactcgggaggaccgagggtgctgctgggattgagtaacggcgaggcagtatcaccccttgctcttgctcccgaattcgtcccttcttcttcaactgcctctaaccatcatcaacctccaaagcttcggtcaccactctacaagacgaaattatgtaggtacaaaagttcttgctcgaagggagacctgtgtgacttcgcgcatagtgatgacgagattcgcatgccacccaagtacgcctcaaagtgcaagtttggaagcctttgtccgcatgccaccctctctaaatgcttttaccgtcatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.68

Weight (kDa)

4.75

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 308
AccII CGCG 1 cut(s) 653
AciI CCGC 2 cut(s) 260, 722
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 124, 381
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 3 cut(s) 455, 614, 689
AgsI TTSAA 1 cut(s) 546
AluBI AGCT 6 cut(s) 144, 180, 196, 269, 334, 577
AluI AGCT 6 cut(s) 144, 180, 196, 269, 334, 577
Alw26I GTCTC 5 cut(s) 2, 32, 52, 122, 630
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 457
AoxI GGCC 3 cut(s) 187, 228, 301
ApeKI GCWGC 2 cut(s) 33, 475
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 4 cut(s) 187, 229, 302, 464
AsuHPI GGTGA 2 cut(s) 498, 576
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 604, 637
BbvI GCAGC 2 cut(s) 45, 462
BccI CCATC 1 cut(s) 567
BceAI ACGGC 2 cut(s) 295, 508
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BcoDI GTCTC 5 cut(s) 2, 32, 52, 122, 630
BfaI CTAG 1 cut(s) 200
BisI GCNGC 2 cut(s) 34, 476
BlsI GCNGC 2 cut(s) 35, 477
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 187, 229, 302, 464
BmrI ACTGGG 2 cut(s) 226, 319
BmsI GCATC 1 cut(s) 412
BmuI ACTGGG 2 cut(s) 226, 319
BoxI GACNNNNGTC 2 cut(s) 14, 44
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 3 cut(s) 2, 122, 630
BsaJI CCNNGG 4 cut(s) 99, 123, 392, 467
BsaXI ACNNNNNCTCC 4 cut(s) 128, 157, 158, 187
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 232, 325
Bse21I CCTNAGG 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 99, 123, 392, 467
BseGI GGATG 2 cut(s) 300, 403
BseMII CTCAG 4 cut(s) 174, 333, 333, 363
BseNI ACTGG 2 cut(s) 232, 325
BseXI GCAGC 2 cut(s) 45, 462
BseYI CCCAGC 2 cut(s) 176, 478
Bsh1236I CGCG 1 cut(s) 653
BshFI GGCC 3 cut(s) 189, 230, 303
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 3 cut(s) 23, 116, 204
BslFI GGGAC 2 cut(s) 277, 518
BsmAI GTCTC 5 cut(s) 2, 32, 52, 122, 630
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 277, 518
BsnI GGCC 3 cut(s) 189, 230, 303
Bso31I GGTCTC 3 cut(s) 2, 122, 630
BsoBI CYCGRG 1 cut(s) 457
Bsp143I GATC 1 cut(s) 353
BspACI CCGC 2 cut(s) 260, 722
BspANI GGCC 3 cut(s) 189, 230, 303
BspCNI CTCAG 4 cut(s) 175, 332, 334, 364
BspFNI CGCG 1 cut(s) 653
BspHI TCATGA 1 cut(s) 754
BspPI GGATC 1 cut(s) 361
BspTNI GGTCTC 3 cut(s) 2, 122, 630
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 232, 325
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 99, 123, 392, 467
BssMI GATC 1 cut(s) 353
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 392
Bst4CI ACNGT 1 cut(s) 752
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 205, 677, 726
BstDEI CTNAG 5 cut(s) 183, 274, 319, 342, 372
BstDSI CCRYGG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 582
BstF5I GGATG 2 cut(s) 300, 403
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 5 cut(s) 2, 32, 52, 122, 630
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 2 cut(s) 186, 266
BstNSI RCATGY 2 cut(s) 679, 728
BstPAI GACNNNNGTC 2 cut(s) 14, 44
BstPI GGTNACC 1 cut(s) 582
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 45, 462
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 3 cut(s) 189, 230, 303
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 300, 403
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 205, 677, 726
CciI TCATGA 1 cut(s) 754
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 4 cut(s) 187, 229, 302, 464
Csp6I GTAC 3 cut(s) 454, 613, 688
CviAII CATG 3 cut(s) 676, 725, 755
CviQI GTAC 3 cut(s) 454, 613, 688
DdeI CTNAG 5 cut(s) 183, 274, 319, 342, 372
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 392
Eco31I GGTCTC 3 cut(s) 2, 122, 630
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 124, 381
Eco81I CCTNAGG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 457
Eco91I GGTNACC 1 cut(s) 582
EcoO65I GGTNACC 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 3 cut(s) 679, 728, 758
FaiI YATR 8 cut(s) 157, 388, 414, 607, 657, 677, 726, 756
FaqI GGGAC 2 cut(s) 277, 518
FatI CATG 3 cut(s) 675, 724, 754
FauI CCCGC 1 cut(s) 253
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 2 cut(s) 34, 476
FokI GGATG 2 cut(s) 307, 390
Fsp4HI GCNGC 2 cut(s) 34, 476
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 654
GluI GCNGC 2 cut(s) 34, 476
GsaI CCCAGC 2 cut(s) 180, 482
HaeIII GGCC 3 cut(s) 189, 230, 303
HapII CCGG 3 cut(s) 23, 116, 204
HhaI GCGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 679, 728, 758
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HincII GTYRAC 2 cut(s) 106, 237
HindII GTYRAC 2 cut(s) 106, 237
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 2 cut(s) 449, 670
HpaII CCGG 3 cut(s) 23, 116, 204
HphI GGTGA 2 cut(s) 498, 576
Hpy166II GTNNAC 3 cut(s) 106, 237, 309
Hpy188I TCNGA 3 cut(s) 54, 184, 419
Hpy188III TCNNGA 6 cut(s) 285, 371, 407, 459, 524, 755
Hpy8I GTNNAC 3 cut(s) 106, 237, 309
Hpy99I CGWCG 3 cut(s) 20, 80, 83
HpyAV CCTTC 3 cut(s) 344, 546, 625
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4IV ACGT 4 cut(s) 15, 45, 78, 108
HpyCH4V TGCA 2 cut(s) 386, 702
HpyF10VI GCNNNNNNNGC 2 cut(s) 186, 266
HpyF3I CTNAG 5 cut(s) 183, 274, 319, 342, 372
HpySE526I ACGT 4 cut(s) 15, 45, 78, 108
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 679, 728, 758
HspAI GCGC 1 cut(s) 653
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 3 cut(s) 149, 400, 526
Lsp1109I GCAGC 2 cut(s) 45, 462
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 200
MaeII ACGT 4 cut(s) 15, 45, 78, 108
MaeIII GTNAC 4 cut(s) 440, 488, 582, 644
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MboII GAAGA 5 cut(s) 17, 359, 374, 531, 534
MluCI AATT 2 cut(s) 527, 602
MmeI TCCRAC 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 660
MspI CCGG 3 cut(s) 23, 116, 204
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 2 cut(s) 186, 266
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 1 cut(s) 353
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 3 cut(s) 679, 728, 758
NmuCI GTSAC 2 cut(s) 582, 644
NspI RCATGY 2 cut(s) 679, 728
PaeI GCATGC 2 cut(s) 679, 728
PagI TCATGA 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 449, 670
PkrI GCNGC 2 cut(s) 35, 477
PshAI GACNNNNGTC 2 cut(s) 14, 44
PspEI GGTNACC 1 cut(s) 582
PspFI CCCAGC 2 cut(s) 176, 478
PspPI GGNCC 4 cut(s) 187, 229, 302, 464
RsaI GTAC 3 cut(s) 455, 614, 689
RsaNI GTAC 3 cut(s) 454, 613, 688
RseI CAYNNNNRTG 1 cut(s) 660
SatI GCNGC 2 cut(s) 34, 476
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 4 cut(s) 187, 229, 302, 464
SfaNI GCATC 1 cut(s) 412
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SphI GCATGC 2 cut(s) 679, 728
Sse9I AATT 2 cut(s) 527, 602
SsiI CCGC 2 cut(s) 260, 722
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 752
TaiI ACGT 4 cut(s) 18, 48, 81, 111
TaqI TCGA 3 cut(s) 219, 356, 629
TaqII GACCGA 2 cut(s) 481, 570
TasI AATT 2 cut(s) 527, 602
TfiI GAWTC 2 cut(s) 449, 670
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 582, 644
TseI GCWGC 2 cut(s) 33, 475
Tsp45I GTSAC 2 cut(s) 582, 644
TspGWI ACGGA 2 cut(s) 136, 140
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 527
XceI RCATGY 2 cut(s) 679, 728
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.