Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

5745274 .. 5747664

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTCACTCTGGGAAGCTCTTCCTTCTGTTACCGTCGTCGGAGGCCAGAGTTCCAGGAAGTCTTCCGTTTGGGAAAGCATGGTGAGGAGAGGTTTCTTGCCTCGTGGATCTGTTATTGTGGCGAGGAGACCATTAGTGTTGCAGCTTCATCGGATAGTGGATGGGCGATCTGAATATGCAGAGTTTCTTTGTGCGCCTAGGAAGAAGTTTACTGATTTTGATTCTGTACACAAGGAGATCTCAGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

83

Amino Acids

9.43

Weight (kDa)

9.51

Isoelectric Point (pI)

72.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	10 - 83	3.8e-13	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	17, 145
AluI	AGCT	2 cut(s)	17, 145
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	18
AspA2I	CCTAGG	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	94
AvrII	CCTAGG	1 cut(s)	197
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	198
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	1 cut(s)	143
BlnI	CCTAGG	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	166
BseRI	GAGGAG	2 cut(s)	100, 139
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	107, 167, 237
BspANI	GGCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	115
BspQI	GCTCTTC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	3 cut(s)	107, 167, 237
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	110, 170, 240
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	3 cut(s)	107, 167, 237
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	107, 237
BstYI	RGATCY	2 cut(s)	107, 237
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	3 cut(s)	17, 45, 145
CviKI_1	RGCY	3 cut(s)	17, 45, 145
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	3 cut(s)	109, 169, 239
DpnII	GATC	3 cut(s)	107, 167, 237
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 177
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	210, 229
Hpy188I	TCNGA	4 cut(s)	41, 153, 172, 244
Hpy8I	GTNNAC	2 cut(s)	210, 229
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	142, 179
HpyF3I	CTNAG	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	107, 167, 237
LguI	GCTCTTC	1 cut(s)	24
LpnPI	CCDG	3 cut(s)	40, 59, 67
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	3, 28
MalI	GATC	3 cut(s)	109, 169, 239
MboI	GATC	3 cut(s)	107, 167, 237
MboII	GAAGA	3 cut(s)	11, 54, 214
MflI	RGATCY	2 cut(s)	107, 237
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	35, 78, 83, 111, 117
MroXI	GAANNNNTTC	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
NdeII	GATC	3 cut(s)	107, 167, 237
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	3
PciSI	GCTCTTC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	107, 237
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	24
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	107, 167, 237
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	3 cut(s)	19, 94, 147
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	55
XmaJI	CCTAGG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.