Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

2456684 .. 2457100

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGAGAAAAAGCTATGGAAGTCCACTCCTCGGCGACCGCTCCAAGACCTTCAGTGACGATTGGCTCGTCGCTAATTCCGATGATCAACAAGCTCCAGGACATTCTCGCGCCGGTGGGCAGCGATATGCCGCAGATTTCGCTGCCTCAAGTGGCGGTCGTGGGAAGCCAGAGCAGCGGGAAATCGAGCGTCCTCGAAGCCCTCGTTGGCCGCGACTTCCTCCCCCGCGGCCGCGACATCTGCACTCGGCGGCCGCTCGTGCTGATGCTCGAGAATCGCGCGGCGATGCCCGGTGATGAACACACAGAATGGGGCGAGTTCCGCCACTTGCCCGGTAAACACTTCTACGACTTCTCCGCAATCCGCCGCGAAATTCAGGTACGGATCGAGCTTCTTCTTCATCAATGCTGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

139

Amino Acids

15.28

Weight (kDa)

6.96

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 130	4.1e-21	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	41, 256
AccII	CGCG	7 cut(s)	110, 213, 228, 234, 279, 281, 369
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	3 cut(s)	208, 229, 251
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	3 cut(s)	14, 94, 391
AluI	AGCT	3 cut(s)	14, 94, 391
AlwI	GGATC	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	208, 229, 251
ApeKI	GCWGC	4 cut(s)	120, 142, 174, 408
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	112, 281
AsuC2I	CCSGG	2 cut(s)	291, 333
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	269
BauI	CACGAG	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	129, 132, 186, 395
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	2 cut(s)	291, 333
BfaI	CTAG	1 cut(s)	415
Bme1390I	CCNGG	3 cut(s)	98, 291, 333
BmeT110I	CYCGRG	1 cut(s)	269
BmrFI	CCNGG	3 cut(s)	98, 291, 333
BmsI	GCATC	2 cut(s)	255, 276
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	2 cut(s)	291, 333
BsaJI	CCNNGG	2 cut(s)	30, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	30, 226
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	19
BseX3I	CGGCCG	2 cut(s)	229, 251
BseXI	GCAGC	4 cut(s)	129, 132, 186, 395
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	7 cut(s)	110, 213, 228, 234, 279, 281, 369
Bsh1285I	CGRYCG	4 cut(s)	39, 159, 232, 254
BshFI	GGCC	3 cut(s)	210, 231, 253
BsiEI	CGRYCG	4 cut(s)	39, 159, 232, 254
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	113, 291, 333
BslI	CCNNNNNNNGG	1 cut(s)	31
BsnI	GGCC	3 cut(s)	210, 231, 253
BsoBI	CYCGRG	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	84, 384
BspANI	GGCC	3 cut(s)	210, 231, 253
BspFNI	CGCG	7 cut(s)	110, 213, 228, 234, 279, 281, 369
BspPI	GGATC	1 cut(s)	392
BsrBI	CCGCTC	2 cut(s)	41, 256
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	30, 226
BssMI	GATC	2 cut(s)	84, 384
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	226
BstFNI	CGCG	7 cut(s)	110, 213, 228, 234, 279, 281, 369
BstHHI	GCGC	2 cut(s)	112, 281
BstKTI	GATC	2 cut(s)	87, 387
BstMBI	GATC	2 cut(s)	84, 384
BstMCI	CGRYCG	4 cut(s)	39, 159, 232, 254
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 174, 240, 259, 321
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	96, 289, 331
BstUI	CGCG	7 cut(s)	110, 213, 228, 234, 279, 281, 369
BstV1I	GCAGC	4 cut(s)	129, 132, 186, 395
BstZI	CGGCCG	2 cut(s)	229, 251
BsuRI	GGCC	3 cut(s)	210, 231, 253
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	60
CciNI	GCGGCCGC	2 cut(s)	229, 251
CfoI	GCGC	2 cut(s)	112, 281
Cfr10I	RCCGGY	1 cut(s)	112
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	380
CviJI	RGCY	9 cut(s)	14, 66, 94, 168, 200, 210, 231, 253, 391
CviKI_1	RGCY	9 cut(s)	14, 66, 94, 168, 200, 210, 231, 253, 391
CviQI	GTAC	1 cut(s)	380
DpnI	GATC	2 cut(s)	86, 386
DpnII	GATC	2 cut(s)	84, 384
EaeI	YGGCCR	3 cut(s)	208, 229, 251
EagI	CGGCCG	2 cut(s)	229, 251
EciI	GGCGGA	2 cut(s)	311, 353
EclXI	CGGCCG	2 cut(s)	229, 251
Eco52I	CGGCCG	2 cut(s)	229, 251
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	96
FaiI	YATR	2 cut(s)	17, 128
FauI	CCCGC	2 cut(s)	170, 233
FbaI	TGATCA	1 cut(s)	84
FspBI	CTAG	1 cut(s)	415
GlaI	GCGC	2 cut(s)	111, 280
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	210, 231, 253
HapII	CCGG	3 cut(s)	113, 291, 333
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	2 cut(s)	112, 281
Hin6I	GCGC	2 cut(s)	110, 279
HinP1I	GCGC	2 cut(s)	110, 279
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	3 cut(s)	113, 291, 333
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	25, 338
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	25, 338
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 174, 240, 259, 321
HspAI	GCGC	2 cut(s)	110, 279
Ksp22I	TGATCA	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	84, 384
LmnI	GCTCC	2 cut(s)	46, 99
LpnPI	CCDG	7 cut(s)	83, 110, 126, 182, 304, 346, 362
Lsp1109I	GCAGC	4 cut(s)	129, 132, 186, 395
LweI	GCATC	2 cut(s)	255, 276
MaeI	CTAG	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	86, 386
MbiI	CCGCTC	2 cut(s)	41, 256
MboI	GATC	2 cut(s)	84, 384
MboII	GAAGA	2 cut(s)	386, 389
MluCI	AATT	2 cut(s)	75, 372
MnlI	CCTC	5 cut(s)	40, 156, 203, 212, 230
MspA1I	CMGCKG	2 cut(s)	177, 228
MspI	CCGG	3 cut(s)	113, 291, 333
MspR9I	CCNGG	3 cut(s)	98, 291, 333
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	7 cut(s)	110, 213, 228, 234, 279, 281, 369
MwoI	GCNNNNNNNGC	5 cut(s)	139, 174, 240, 259, 321
NciI	CCSGG	2 cut(s)	291, 333
NdeII	GATC	2 cut(s)	84, 384
NmeAIII	GCCGAG	2 cut(s)	11, 226
NmuCI	GTSAC	1 cut(s)	55
NotI	GCGGCCGC	2 cut(s)	229, 251
PaeR7I	CTCGAG	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	4 cut(s)	65, 77, 201, 210
PfeI	GAWTC	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SacII	CCGCGG	1 cut(s)	229
Sau3AI	GATC	2 cut(s)	84, 384
ScrFI	CCNGG	3 cut(s)	98, 291, 333
SetI	ASST	5 cut(s)	16, 52, 96, 381, 393
SfaNI	GCATC	2 cut(s)	255, 276
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	229
SgrAI	CRCCGGYG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	147, 269
SmoI	CTYRAG	2 cut(s)	147, 269
Sse9I	AATT	2 cut(s)	75, 372
SspMI	CTAG	1 cut(s)	415
StyD4I	CCNGG	3 cut(s)	96, 289, 331
TaqI	TCGA	4 cut(s)	185, 195, 270, 387
TasI	AATT	2 cut(s)	75, 372
TauI	GCSGC	8 cut(s)	133, 213, 231, 234, 253, 256, 284, 369
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	120, 142, 174, 408
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	312, 389
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.