Rh2CG350500

mitochondrial fission

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000383
Physical Location & Seq
Forward (+)
47333543 .. 47347519
13977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG350500.1

Sequence Viewer

Length: 687 bp
ATGAACGTTTTCTCAAATCCACGCGATTTGACTCCCACCCCGCCCGTAGCTCCCTCCGTCACCGCTGAGTTTTGGATGGAGAACCTGATCTCGCTGGTCAACAAAATCCAAAGAGCTTGCACAGCTCTCGGTGACCACGGCGAAACCCACACATTACCGACTCTTTGGGACTCGCTTCCCTCCATCGCTGCCGTCGGTGCCCAGGAATTGTTAGTCGACATCCTCTTGTGTTCCAGCCTCATAAGGTTGATGAACGCAGCACAGAATATGCGGAGTTTCTCCACCTTCCAAGGAAAAGGTTCACAGATTTCGGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAACGATCAGGTTGACTCGGTCAGTCTTGAGTCTTGACATCCTCACTGGGAGCCTCGGCGGTCTCGGACGCGCCGTTTTCAGCAGCAGAAGCAGCGGCGTTGTTGGAGTTGATCTCCAGGATGCGCTTGCCGACCTCATTGGAGTATATCTGCAGCATCTTCATCCAGAAGGCGTTTTATGCCCTCGGCTTCGGACAAGGTACACTAGTGTCTGGAGAGAGGAGGAGGAGGGATACAAGGCGGTCAATTGGCGCTGCTTGGGAATTTTGAGCTTGAATTTCAATTTGCGGTCTGCGGCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.8

Weight (kDa)

8.41

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 2 cut(s) 216, 358
AccII CGCG 2 cut(s) 24, 453
AciI CCGC 9 cut(s) 41, 63, 271, 441, 477, 623, 670, 677, 680
AclI AACGTT 1 cut(s) 6
AcsI RAATTY 2 cut(s) 645, 658
AfaI GTAC 1 cut(s) 584
AgsI TTSAA 2 cut(s) 658, 664
AhlI ACTAGT 1 cut(s) 587
AjnI CCWGG 2 cut(s) 201, 498
AluBI AGCT 4 cut(s) 50, 116, 125, 654
AluI AGCT 4 cut(s) 50, 116, 125, 654
Alw26I GTCTC 1 cut(s) 449
ApeKI GCWGC 6 cut(s) 188, 257, 465, 474, 535, 636
ApoI RAATTY 2 cut(s) 645, 658
Asp700I GAANNNNTTC 2 cut(s) 8, 298
AspLEI GCGC 3 cut(s) 455, 508, 636
AsuHPI GGTGA 2 cut(s) 52, 143
BaeGI GKGCMC 1 cut(s) 202
BaeI ACNNNNGTAYC 2 cut(s) 574, 607
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 6 cut(s) 175, 269, 477, 486, 547, 623
BccI CCATC 2 cut(s) 70, 191
BceAI ACGGC 3 cut(s) 154, 176, 440
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 2 cut(s) 203, 500
BciVI GTATCC 1 cut(s) 608
BcoDI GTCTC 1 cut(s) 449
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 533
BfoI RGCGCY 1 cut(s) 637
BfuI GTATCC 1 cut(s) 608
BisI GCNGC 8 cut(s) 189, 258, 466, 475, 478, 536, 637, 678
BlsI GCNGC 8 cut(s) 190, 259, 467, 476, 479, 537, 638, 679
Bme1390I CCNGG 2 cut(s) 203, 500
BmiI GGNNCC 2 cut(s) 199, 434
BmrFI CCNGG 2 cut(s) 203, 500
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 2 cut(s) 493, 547
BmuI ACTGGG 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 480, 512
BpmI CTGGAG 2 cut(s) 482, 616
BpuEI CTTGAG 1 cut(s) 430
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 5 cut(s) 136, 201, 289, 436, 566
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 203, 500
BseDI CCNNGG 5 cut(s) 136, 201, 289, 436, 566
BseGI GGATG 5 cut(s) 81, 219, 420, 508, 544
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 3 cut(s) 617, 620, 623
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 6 cut(s) 175, 269, 477, 486, 547, 623
Bsh1236I CGCG 2 cut(s) 24, 453
BshNI GGYRCC 1 cut(s) 197
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 87, 387, 493
BspACI CCGC 9 cut(s) 41, 63, 271, 441, 477, 623, 670, 677, 680
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 2 cut(s) 24, 453
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 199, 434
BspMAI CTGCAG 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 5 cut(s) 136, 201, 289, 436, 566
BssMI GATC 3 cut(s) 87, 387, 493
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 203, 500
BstC8I GCNNGC 2 cut(s) 118, 510
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 136
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 5 cut(s) 81, 219, 420, 508, 544
BstFNI CGCG 2 cut(s) 24, 453
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 3 cut(s) 455, 508, 636
BstKTI GATC 3 cut(s) 90, 390, 496
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 87, 387, 493
BstMWI GCNNNNNNNGC 5 cut(s) 122, 197, 471, 474, 561
BstNI CCWGG 2 cut(s) 203, 500
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 201, 498
BstSFI CTRYAG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 2 cut(s) 24, 453
BstV1I GCAGC 6 cut(s) 175, 269, 477, 486, 547, 623
BsuI GTATCC 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 5 cut(s) 81, 219, 420, 508, 544
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 118, 510
CciI TCATGA 1 cut(s) 348
CfoI GCGC 3 cut(s) 455, 508, 636
CseI GACGC 1 cut(s) 459
Csp6I GTAC 1 cut(s) 583
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 1 cut(s) 349
CviJI RGCY 7 cut(s) 50, 116, 125, 237, 435, 571, 654
CviKI_1 RGCY 7 cut(s) 50, 116, 125, 237, 435, 571, 654
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 1 cut(s) 66
DpnI GATC 3 cut(s) 89, 389, 495
DpnII GATC 3 cut(s) 87, 387, 493
Eco130I CCWWGG 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 449
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 201, 498
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 352
FaiI YATR 6 cut(s) 242, 269, 321, 350, 529, 562
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 2 cut(s) 216, 358
Fnu4HI GCNGC 8 cut(s) 189, 258, 466, 475, 478, 536, 637, 678
FokI GGATG 5 cut(s) 88, 206, 407, 515, 531
Fsp4HI GCNGC 8 cut(s) 189, 258, 466, 475, 478, 536, 637, 678
FspBI CTAG 1 cut(s) 588
GlaI GCGC 3 cut(s) 454, 507, 635
GluI GCNGC 8 cut(s) 189, 258, 466, 475, 478, 536, 637, 678
GsuI CTGGAG 2 cut(s) 482, 616
HaeII RGCGCY 1 cut(s) 637
HgaI GACGC 1 cut(s) 459
HhaI GCGC 3 cut(s) 455, 508, 636
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 3 cut(s) 453, 506, 634
HinP1I GCGC 3 cut(s) 453, 506, 634
HincII GTYRAC 3 cut(s) 100, 217, 396
HindII GTYRAC 3 cut(s) 100, 217, 396
HinfI GANTC 5 cut(s) 31, 160, 170, 397, 412
HphI GGTGA 2 cut(s) 52, 143
Hpy166II GTNNAC 6 cut(s) 100, 217, 302, 359, 396, 585
Hpy188I TCNGA 2 cut(s) 449, 576
Hpy188III TCNNGA 5 cut(s) 349, 409, 416, 548, 595
Hpy8I GTNNAC 6 cut(s) 100, 217, 302, 359, 396, 585
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 295, 328, 545
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 120, 326, 535
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 197, 471, 474, 561
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 3 cut(s) 453, 506, 634
Kzo9I GATC 3 cut(s) 87, 387, 493
LmnI GCTCC 2 cut(s) 55, 432
Lsp1109I GCAGC 6 cut(s) 175, 269, 477, 486, 547, 623
LweI GCATC 2 cut(s) 493, 547
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 58, 131
MalI GATC 3 cut(s) 89, 389, 495
MboI GATC 3 cut(s) 87, 387, 493
MboII GAAGA 1 cut(s) 533
MfeI CAATTG 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 5 cut(s) 206, 628, 645, 658, 664
MlyI GAGTC 5 cut(s) 25, 154, 164, 391, 421
MmeI TCCRAC 1 cut(s) 466
MroXI GAANNNNTTC 2 cut(s) 8, 298
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 2 cut(s) 65, 477
MspR9I CCNGG 2 cut(s) 203, 500
MunI CAATTG 1 cut(s) 628
MvaI CCWGG 2 cut(s) 203, 500
MvnI CGCG 2 cut(s) 24, 453
MwoI GCNNNNNNNGC 5 cut(s) 122, 197, 471, 474, 561
NdeII GATC 3 cut(s) 87, 387, 493
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 199, 434
NmeAIII GCCGAG 2 cut(s) 417, 547
NmuCI GTSAC 2 cut(s) 58, 131
PagI TCATGA 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdmI GAANNNNTTC 2 cut(s) 8, 298
PflFI GACNNNGTC 1 cut(s) 400
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 8 cut(s) 190, 259, 467, 476, 479, 537, 638, 679
PleI GAGTC 5 cut(s) 25, 154, 164, 391, 420
PpsI GAGTC 5 cut(s) 25, 154, 164, 391, 420
Psp1406I AACGTT 1 cut(s) 6
Psp6I CCWGG 2 cut(s) 201, 498
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 201, 498
PspN4I GGNNCC 2 cut(s) 199, 434
PstI CTGCAG 1 cut(s) 537
PsyI GACNNNGTC 1 cut(s) 400
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
RseI CAYNNNNRTG 1 cut(s) 347
SalI GTCGAC 1 cut(s) 215
SatI GCNGC 8 cut(s) 189, 258, 466, 475, 478, 536, 637, 678
Sau3AI GATC 3 cut(s) 87, 387, 493
SchI GAGTC 5 cut(s) 25, 154, 164, 391, 421
ScrFI CCNGG 2 cut(s) 203, 500
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 2 cut(s) 493, 547
SfcI CTRYAG 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 5 cut(s) 206, 628, 645, 658, 664
SsiI CCGC 9 cut(s) 41, 63, 271, 441, 477, 623, 670, 677, 680
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 201, 498
StyI CCWWGG 1 cut(s) 289
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 216
TaqII GACCGA 1 cut(s) 390
TasI AATT 5 cut(s) 206, 628, 645, 658, 664
TauI GCSGC 2 cut(s) 480, 680
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 2 cut(s) 58, 131
TseI GCWGC 6 cut(s) 188, 257, 465, 474, 535, 636
Tsp45I GTSAC 2 cut(s) 58, 131
TspDTI ATGAA 5 cut(s) 17, 266, 305, 337, 533
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 433
Tth111I GACNNNGTC 1 cut(s) 400
XapI RAATTY 2 cut(s) 645, 658
XmiI GTMKAC 2 cut(s) 216, 358
XmnI GAANNNNTTC 2 cut(s) 8, 298
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.