Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

3209509 .. 3213373

Gene Structure 3865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAGAGACCAACGTCTCTCCGACCACTGACACAGAAACCTACGACGTCGTTTCGGAGACCAATACAGAGGTCAACGTCATTCCGGCGACCACGGCGACCAACGACTTCAGTTCCGTTTTCTCATATTACAATACCCAACCTCCCATCTCTGAGGGCCAACAGCTCCTAGCCGGCACAAATCAGGTCGAAAATGAGGCCCAGTCAACTACACGTTCCCCTTGGGTTGCGGGGACAGCTAACTTAGACGGCTCAAGAGAATGGATGTCAGGACCGTCTACTTTTTGCTCAGCCCAGTTTCAGCTTGCGCCTGAGGAAGAAGGATTGACTGAAGAAAATCCTGAGCAAGACCCTGCATATCCTTGGTGGGAGCATCCCGATTATATTGGAAACAAATACGCTGAGATTGGTAACGGGGAATCATACTCGGGAGGACCGAGGGTGCTGCTGGGATTGAGTAACGGCGAGGCAGTATCACCCCTTGCCCTTGCTCCCGAATTCGTCCCTTCAACTTCAACTGCCTCTAACCAGCATCAACCTCCAAAGCCTCGTTCACCACTCTACAAGACGAAATTATGTAGATTGGAGAGCTTGATCGGCCTCGTTAACCGAATCCAGCTAGCCTCCACGGCTTTCGGCGATTATGGCAGCGAGGGCATGTCGCTCTGGGAAGCTCTCCCTTCCGTCACCGTTGTCGGAGGCCAGTTCCAGGAAGTCTCGGTTTGGGAAAGCATGGTGGGGAGAGGTTTCTTGCCTCGTGGATCCGGTATTGTGGTGAGGAGACCATTAGTGTTGCAGCTTCATCGGATAGTGGATAGGCGATCTGAATATGCAGAGTTTCTTAATGCGCCTAGGAAGAAGTTTACTGATTTTGCTTCTGTACACAAGGAGATCTCAGATGAGACTGATCGCATAATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

308

Amino Acids

33.7

Weight (kDa)

4.62

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	240 - 305	8.4e-08	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	756, 769
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	2 cut(s)	94, 351
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	882
AfiI	CCNNNNNNNGG	1 cut(s)	709
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	510, 516
AjnI	CCWGG	1 cut(s)	708
AjuI	GAANNNNNNNTTGG	2 cut(s)	535, 567
AluBI	AGCT	7 cut(s)	166, 239, 304, 591, 619, 674, 799
AluI	AGCT	7 cut(s)	166, 239, 304, 591, 619, 674, 799
Alw26I	GTCTC	6 cut(s)	2, 22, 53, 721, 775, 896
AlwI	GGATC	2 cut(s)	756, 769
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	4 cut(s)	157, 198, 598, 700
ApeKI	GCWGC	3 cut(s)	445, 648, 796
ApoI	RAATTY	1 cut(s)	497
AspA2I	CCTAGG	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	310, 850
AspS9I	GGNCC	4 cut(s)	157, 199, 272, 434
AsuHPI	GGTGA	4 cut(s)	468, 546, 679, 787
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	272, 434
AvrII	CCTAGG	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	761
BauI	CACGAG	1 cut(s)	756
BbvI	GCAGC	3 cut(s)	432, 660, 808
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	4 cut(s)	111, 265, 478, 645
BcgI	CGANNNNNNTGC	4 cut(s)	427, 461, 785, 819
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	6 cut(s)	2, 22, 53, 721, 775, 896
BfaI	CTAG	3 cut(s)	170, 620, 852
BglI	GCCNNNNNGGC	1 cut(s)	629
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	3 cut(s)	446, 649, 797
BlnI	CCTAGG	1 cut(s)	851
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	3 cut(s)	447, 650, 798
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	2 cut(s)	272, 434
BmeT110I	CYCGRG	1 cut(s)	427
BmgT120I	GGNCC	4 cut(s)	157, 199, 272, 434
BmiI	GGNNCC	1 cut(s)	763
BmrFI	CCNGG	1 cut(s)	710
BmrI	ACTGGG	2 cut(s)	196, 289
BmsI	GCATC	2 cut(s)	382, 541
BmtI	GCTAGC	1 cut(s)	623
BmuI	ACTGGG	2 cut(s)	196, 289
BoxI	GACNNNNGTC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	3 cut(s)	2, 53, 775
BsaJI	CCNNGG	6 cut(s)	93, 221, 362, 437, 627, 851
BsaWI	WCCGGW	1 cut(s)	764
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	709
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	202, 295, 703
Bse21I	CCTNAGG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	6 cut(s)	93, 221, 362, 437, 627, 851
BseGI	GGATG	2 cut(s)	270, 373
BseLI	CCNNNNNNNGG	1 cut(s)	709
BseMII	CTCAG	6 cut(s)	144, 303, 303, 333, 393, 909
BseNI	ACTGG	3 cut(s)	202, 295, 703
BseRI	GAGGAG	1 cut(s)	793
BseXI	GCAGC	3 cut(s)	432, 660, 808
BseYI	CCCAGC	1 cut(s)	448
BshFI	GGCC	4 cut(s)	159, 200, 600, 702
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	86, 174, 765
BslFI	GGGAC	2 cut(s)	247, 488
BslI	CCNNNNNNNGG	1 cut(s)	709
BsmAI	GTCTC	6 cut(s)	2, 22, 53, 721, 775, 896
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	247, 488
BsnI	GGCC	4 cut(s)	159, 200, 600, 702
Bso31I	GGTCTC	3 cut(s)	2, 53, 775
BsoBI	CYCGRG	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	5 cut(s)	594, 761, 821, 891, 907
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	4 cut(s)	159, 200, 600, 702
BspCNI	CTCAG	6 cut(s)	145, 302, 304, 334, 394, 908
BspLI	GGNNCC	1 cut(s)	763
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	756, 769
BspTNI	GGTCTC	3 cut(s)	2, 53, 775
BsrFI	RCCGGY	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	3 cut(s)	202, 295, 703
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	6 cut(s)	93, 221, 362, 437, 627, 851
BssMI	GATC	5 cut(s)	594, 761, 821, 891, 907
BssNI	GRCGYC	1 cut(s)	48
BssSI	CACGAG	1 cut(s)	756
BssT1I	CCWWGG	3 cut(s)	221, 362, 851
Bst2BI	CACGAG	1 cut(s)	756
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	276, 691
BstACI	GRCGYC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	175, 306, 621
BstDEI	CTNAG	7 cut(s)	153, 244, 289, 312, 342, 402, 895
BstDSI	CCRYGG	2 cut(s)	93, 627
BstF5I	GGATG	2 cut(s)	270, 373
BstHHI	GCGC	2 cut(s)	310, 850
BstKTI	GATC	5 cut(s)	597, 764, 824, 894, 910
BstMAI	GTCTC	6 cut(s)	2, 22, 53, 721, 775, 896
BstMBI	GATC	5 cut(s)	594, 761, 821, 891, 907
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 236, 597, 629, 645, 654
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	661
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	432, 660, 808
BstX2I	RGATCY	2 cut(s)	761, 891
BstYI	RGATCY	2 cut(s)	761, 891
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	4 cut(s)	159, 200, 600, 702
BtgI	CCRYGG	2 cut(s)	93, 627
BtsCI	GGATG	2 cut(s)	270, 373
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	175, 306, 621
CfoI	GCGC	2 cut(s)	310, 850
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	4 cut(s)	157, 199, 272, 434
Csp6I	GTAC	1 cut(s)	881
CviAII	CATG	2 cut(s)	658, 733
CviQI	GTAC	1 cut(s)	881
DdeI	CTNAG	7 cut(s)	153, 244, 289, 312, 342, 402, 895
DpnI	GATC	5 cut(s)	596, 763, 823, 893, 909
DpnII	GATC	5 cut(s)	594, 761, 821, 891, 907
Eco130I	CCWWGG	3 cut(s)	221, 362, 851
Eco31I	GGTCTC	3 cut(s)	2, 53, 775
Eco47I	GGWCC	2 cut(s)	272, 434
Eco57I	CTGAAG	2 cut(s)	94, 351
Eco81I	CCTNAGG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	3 cut(s)	221, 362, 851
ErhI	CCWWGG	3 cut(s)	221, 362, 851
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	661, 736
FaqI	GGGAC	2 cut(s)	247, 488
FatI	CATG	2 cut(s)	657, 732
FauI	CCCGC	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	446, 649, 797
FokI	GGATG	2 cut(s)	277, 360
Fsp4HI	GCNGC	3 cut(s)	446, 649, 797
FspBI	CTAG	3 cut(s)	170, 620, 852
GlaI	GCGC	2 cut(s)	309, 849
GluI	GCNGC	3 cut(s)	446, 649, 797
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	4 cut(s)	159, 200, 600, 702
HapII	CCGG	3 cut(s)	86, 174, 765
HhaI	GCGC	2 cut(s)	310, 850
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	661, 736
Hin6I	GCGC	2 cut(s)	308, 848
HinP1I	GCGC	2 cut(s)	308, 848
HincII	GTYRAC	3 cut(s)	76, 207, 607
HindII	GTYRAC	3 cut(s)	76, 207, 607
HinfI	GANTC	2 cut(s)	419, 612
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	3 cut(s)	86, 174, 765
HphI	GGTGA	4 cut(s)	468, 546, 679, 787
Hpy166II	GTNNAC	7 cut(s)	76, 207, 279, 554, 607, 864, 883
Hpy188I	TCNGA	7 cut(s)	24, 58, 154, 698, 807, 826, 898
Hpy188III	TCNNGA	6 cut(s)	255, 270, 341, 377, 429, 494
Hpy8I	GTNNAC	7 cut(s)	76, 207, 279, 554, 607, 864, 883
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyAV	CCTTC	3 cut(s)	314, 516, 690
HpyCH4III	ACNGT	2 cut(s)	276, 691
HpyCH4IV	ACGT	4 cut(s)	15, 48, 78, 214
HpyCH4V	TGCA	3 cut(s)	356, 796, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 236, 597, 629, 645, 654
HpyF3I	CTNAG	7 cut(s)	153, 244, 289, 312, 342, 402, 895
HpySE526I	ACGT	4 cut(s)	15, 48, 78, 214
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	661, 736
HspAI	GCGC	2 cut(s)	308, 848
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	594, 761, 821, 891, 907
LmnI	GCTCC	3 cut(s)	171, 370, 496
Lsp1109I	GCAGC	3 cut(s)	432, 660, 808
LweI	GCATC	2 cut(s)	382, 541
MaeI	CTAG	3 cut(s)	170, 620, 852
MaeII	ACGT	4 cut(s)	15, 48, 78, 214
MaeIII	GTNAC	3 cut(s)	410, 458, 685
MalI	GATC	5 cut(s)	596, 763, 823, 893, 909
MboI	GATC	5 cut(s)	594, 761, 821, 891, 907
MboII	GAAGA	4 cut(s)	17, 329, 344, 868
MflI	RGATCY	2 cut(s)	761, 891
MluCI	AATT	3 cut(s)	497, 572, 915
MmeI	TCCRAC	2 cut(s)	47, 676
MroNI	GCCGGC	1 cut(s)	173
MseI	TTAA	2 cut(s)	606, 843
MspI	CCGG	3 cut(s)	86, 174, 765
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	6 cut(s)	95, 236, 597, 629, 645, 654
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	5 cut(s)	594, 761, 821, 891, 907
NgoMIV	GCCGGC	1 cut(s)	173
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	2 cut(s)	661, 736
NlaIV	GGNNCC	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	419, 612
PfoI	TCCNGGA	1 cut(s)	708
PkrI	GCNGC	3 cut(s)	447, 650, 798
PshAI	GACNNNNGTC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	1 cut(s)	763
PspPI	GGNCC	4 cut(s)	157, 199, 272, 434
PsuI	RGATCY	2 cut(s)	761, 891
RsaI	GTAC	1 cut(s)	882
RsaNI	GTAC	1 cut(s)	881
SaqAI	TTAA	2 cut(s)	606, 843
SatI	GCNGC	3 cut(s)	446, 649, 797
Sau3AI	GATC	5 cut(s)	594, 761, 821, 891, 907
Sau96I	GGNCC	4 cut(s)	157, 199, 272, 434
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	2 cut(s)	382, 541
SinI	GGWCC	2 cut(s)	272, 434
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	497, 572, 915
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	170, 620, 852
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	3 cut(s)	221, 362, 851
TaaI	ACNGT	2 cut(s)	276, 691
TaiI	ACGT	4 cut(s)	18, 51, 81, 217
TaqI	TCGA	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	3 cut(s)	497, 572, 915
TatI	WGTACW	1 cut(s)	880
TfiI	GAWTC	2 cut(s)	419, 612
Tru1I	TTAA	2 cut(s)	606, 843
Tru9I	TTAA	2 cut(s)	606, 843
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	3 cut(s)	445, 648, 796
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	1 cut(s)	791
TspGWI	ACGGA	2 cut(s)	106, 673
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	272, 434
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	851
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	3 cut(s)	170, 620, 852
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.