Rh4AG397700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000383
Physical Location & Seq
Reverse (-)
70225013 .. 70225880
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG397700.1

Sequence Viewer

Length: 519 bp
ATGGAAGAGACCAACGTCGTTCCGGCGAACAGCAGGCAGACTAACGTCTCTCCGACCACTGACACAGAAACCTACGACGTCGTTTCGGCGACCAATACCGAGGTCAACGTCATTCCGGCGACCAACGACTTCAGTTCCGTTTTCTCATATTACAATACCCAACCTCCCATCTCTGAGGGCCATCAGCTTCTTGCCGGCACAAATCAGGTCGAAAATGAGGCCCAGTCAACTACTCGTTCCTCTTGGGTTGCGGGGACAGCTCACTTAGACGGCTCAAGAGAATGGATGTCAGGCCCGTCTACTTTTCTCTCAGCCCAGTTTCGGCTTACGCCTGAGGAAAAAGGATCGACTGAAAAAAATCCTGAGCAAGACCCTGCATATCCTTGGTGGGAGCATCCCGATTATATCGGAAACAAATACGCTGACATTGGTAACGGGGAATCATACTCGGGAGGACCGAGGGTGCTGCTGGGATTGAGTAACGGCGAGGCAGTATCACCCCTTGAACTTGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.73

Weight (kDa)

4.29

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 299
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 1 cut(s) 506
AluBI AGCT 2 cut(s) 187, 260
AluI AGCT 2 cut(s) 187, 260
Alw26I GTCTC 2 cut(s) 2, 52
AlwI GGATC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 3 cut(s) 178, 219, 292
ApeKI GCWGC 1 cut(s) 466
AspS9I GGNCC 4 cut(s) 178, 220, 293, 455
AsuHPI GGTGA 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 333
BbvI GCAGC 1 cut(s) 453
BccI CCATC 2 cut(s) 176, 189
BceAI ACGGC 2 cut(s) 286, 499
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BcoDI GTCTC 2 cut(s) 2, 52
BisI GCNGC 1 cut(s) 467
BlsI GCNGC 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 448
BmgT120I GGNCC 4 cut(s) 178, 220, 293, 455
BmrI ACTGGG 2 cut(s) 217, 310
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 2 cut(s) 217, 310
BoxI GACNNNNGTC 2 cut(s) 14, 44
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 3 cut(s) 99, 383, 458
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 223, 316
Bse21I CCTNAGG 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 99, 383, 458
BseGI GGATG 2 cut(s) 291, 394
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 4 cut(s) 165, 324, 324, 354
BseNI ACTGG 2 cut(s) 223, 316
BseXI GCAGC 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 469
BshFI GGCC 3 cut(s) 180, 221, 294
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 3 cut(s) 23, 116, 195
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 2, 52
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 3 cut(s) 180, 221, 294
Bso31I GGTCTC 1 cut(s) 2
BsoBI CYCGRG 1 cut(s) 448
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 1 cut(s) 251
BspANI GGCC 3 cut(s) 180, 221, 294
BspCNI CTCAG 4 cut(s) 166, 323, 325, 355
BspPI GGATC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 2 cut(s) 223, 316
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 99, 383, 458
BssMI GATC 1 cut(s) 344
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 35, 196
BstDEI CTNAG 5 cut(s) 174, 265, 310, 333, 363
BstF5I GGATG 2 cut(s) 291, 394
BstKTI GATC 1 cut(s) 347
BstMAI GTCTC 2 cut(s) 2, 52
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstPAI GACNNNNGTC 2 cut(s) 14, 44
BstV1I GCAGC 1 cut(s) 453
Bsu36I CCTNAGG 1 cut(s) 333
BsuRI GGCC 3 cut(s) 180, 221, 294
BtsCI GGATG 2 cut(s) 291, 394
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 35, 196
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 4 cut(s) 178, 220, 293, 455
CviJI RGCY 8 cut(s) 180, 187, 221, 260, 273, 294, 314, 325
CviKI_1 RGCY 8 cut(s) 180, 187, 221, 260, 273, 294, 314, 325
DdeI CTNAG 5 cut(s) 174, 265, 310, 333, 363
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 383
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
Esp3I CGTCTC 1 cut(s) 52
FaiI YATR 4 cut(s) 148, 379, 405, 445
FaqI GGGAC 1 cut(s) 268
FauI CCCGC 1 cut(s) 244
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 467
FokI GGATG 2 cut(s) 298, 381
Fsp4HI GCNGC 1 cut(s) 467
GluI GCNGC 1 cut(s) 467
GsaI CCCAGC 1 cut(s) 473
HaeIII GGCC 3 cut(s) 180, 221, 294
HapII CCGG 3 cut(s) 23, 116, 195
Hin1I GRCGYC 1 cut(s) 78
HincII GTYRAC 2 cut(s) 106, 228
HindII GTYRAC 2 cut(s) 106, 228
HinfI GANTC 1 cut(s) 440
HpaII CCGG 3 cut(s) 23, 116, 195
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 3 cut(s) 106, 228, 300
Hpy188I TCNGA 3 cut(s) 54, 175, 410
Hpy188III TCNNGA 4 cut(s) 276, 362, 398, 450
Hpy8I GTNNAC 3 cut(s) 106, 228, 300
Hpy99I CGWCG 3 cut(s) 20, 80, 83
HpyCH4IV ACGT 4 cut(s) 15, 45, 78, 108
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 5 cut(s) 174, 265, 310, 333, 363
HpySE526I ACGT 4 cut(s) 15, 45, 78, 108
Hsp92I GRCGYC 1 cut(s) 78
KroI GCCGGC 1 cut(s) 194
KroNI GCCGGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 1 cut(s) 403
MaeII ACGT 4 cut(s) 15, 45, 78, 108
MaeIII GTNAC 2 cut(s) 431, 479
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 9 cut(s) 94, 169, 174, 211, 250, 328, 446, 453, 481
MroNI GCCGGC 1 cut(s) 194
MspI CCGG 3 cut(s) 23, 116, 195
MwoI GCNNNNNNNGC 1 cut(s) 257
NaeI GCCGGC 1 cut(s) 196
NdeII GATC 1 cut(s) 344
NgoMIV GCCGGC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PdiI GCCGGC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 468
PshAI GACNNNNGTC 2 cut(s) 14, 44
PspFI CCCAGC 1 cut(s) 469
PspPI GGNCC 4 cut(s) 178, 220, 293, 455
SatI GCNGC 1 cut(s) 467
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 4 cut(s) 178, 220, 293, 455
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 1 cut(s) 251
StyI CCWWGG 1 cut(s) 383
TaiI ACGT 4 cut(s) 18, 48, 81, 111
TaqI TCGA 2 cut(s) 210, 347
TaqII GACCGA 1 cut(s) 472
TfiI GAWTC 1 cut(s) 440
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 466
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 299
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.