Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

61371100 .. 61375890

Gene Structure 4791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G034240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTTCTATATACCGTCAGTGTACATGCACTGACGCGCCTGACGCCTGAGGAAGAAGGATCGACTGAAGAAAATCCTGAGCAAGAAGGCAGTGCACCTGCATATCCTTGGTGGGAGCATCACGATTATCTCGGAAAAAATACGCTGAGATTGGAGAGCTTGATCGGCCTTGTTAACCCAATCCAGCTAGCCTGCACCGCTTTCGGTGATCATGGCAGCGAGGGCATGTCGCTCTGGGAAGCTCTCCCTTCCGCTACCGTCGTTGGAGGCCAGAGTTTCAGGAAGTCTTCGGTTTGGGAAAGCATGGTGGGGAGAGGTTTCTTGCCTTGTGGATCTGGTATTGTGGTGAGGAGACCATTAGTGTTGCAGCTTCATCGGGTAGTGGATGGGCGATCTGAATATGCAGAGTTTCTTCATGCGACTAGGAAGAAGTTTACTGATTGTGGCGTACCTTGCAGTTGTAAATATATCTCCATAGATCTTCCTGGATTGACCAAGTTTTCTGTAGGCAGAACATTTGGAGTGATAACAAAACTTGATCTAATGGACAAGGGAACCAACGCTTTCAATCATTTGAAGTCTCTCATCAGGCAGCGCATACCAAGGATCACTGCTTTGATTAATAAGACCATTAGTGAATTAAATGTAGAGCCGGATCGCATTGGCAGGCCAATTGGCATAGATTCAGGGGTCCAATTGTACACTATTTTACAACTATGTCGTGCATTTGAAGGTGTATTCAAGGAACACTTGGTTGGAGGGTTAGCTTTGAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

259

Amino Acids

28.62

Weight (kDa)

7.08

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	87 - 137	2.3e-07	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	106
AccII	CGCG	1 cut(s)	37
AciI	CCGC	2 cut(s)	198, 252
AclWI	GGATC	4 cut(s)	67, 340, 614, 663
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	3 cut(s)	24, 450, 701
AgsI	TTSAA	5 cut(s)	568, 577, 731, 742, 772
AjnI	CCWGG	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	5 cut(s)	159, 187, 242, 370, 767
AluI	AGCT	5 cut(s)	159, 187, 242, 370, 767
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	346, 585
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	4 cut(s)	67, 340, 614, 663
AoxI	GGCC	3 cut(s)	166, 268, 668
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	216, 367, 592
AseI	ATTAAT	1 cut(s)	621
AspLEI	GCGC	2 cut(s)	39, 597
AspS9I	GGNCC	1 cut(s)	691
AsuHPI	GGTGA	2 cut(s)	218, 358
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	691
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	228, 379, 604
BccI	CCATC	1 cut(s)	380
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 356, 390
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	346, 585
BfaI	CTAG	2 cut(s)	188, 423
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	3 cut(s)	217, 368, 593
BlsI	GCNGC	3 cut(s)	218, 369, 594
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	691
BmiI	GGNNCC	2 cut(s)	556, 692
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	1 cut(s)	127
BmtI	GCTAGC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	107, 602
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	107, 602
BseGI	GGATG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	39, 69, 137
BseRI	GAGGAG	1 cut(s)	364
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	228, 379, 604
BsgI	GTGCAG	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	168, 270, 670
BsiHKAI	GWGCWC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	346, 585
BsnI	GGCC	3 cut(s)	168, 270, 670
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	2 cut(s)	22, 699
Bsp143I	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
BspACI	CCGC	2 cut(s)	198, 252
BspANI	GGCC	3 cut(s)	168, 270, 670
BspCNI	CTCAG	3 cut(s)	40, 70, 138
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	556, 692
BspMI	ACCTGC	1 cut(s)	106
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	4 cut(s)	67, 340, 614, 663
BspTNI	GGTCTC	1 cut(s)	346
BsrGI	TGTACA	2 cut(s)	22, 699
BssECI	CCNNGG	2 cut(s)	107, 602
BssMI	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	107, 602
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	16, 259
BstACI	GRCGYC	1 cut(s)	44
BstAUI	TGTACA	2 cut(s)	22, 699
BstC8I	GCNNGC	3 cut(s)	189, 193, 668
BstDEI	CTNAG	3 cut(s)	48, 78, 146
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	39, 597
BstKTI	GATC	9 cut(s)	62, 165, 211, 335, 395, 481, 541, 609, 658
BstMAI	GTCTC	2 cut(s)	346, 585
BstMBI	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 165, 197, 222, 453
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	2 cut(s)	29, 229
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	228, 379, 604
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	332, 478
BstYI	RGATCY	2 cut(s)	332, 478
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	168, 270, 670
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	2 cut(s)	97, 609
BtsIMutI	CAGTG	4 cut(s)	25, 29, 97, 609
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	189, 193, 668
CfoI	GCGC	2 cut(s)	39, 597
Cfr13I	GGNCC	1 cut(s)	691
CseI	GACGC	2 cut(s)	43, 52
Csp6I	GTAC	3 cut(s)	23, 449, 700
CviAII	CATG	5 cut(s)	26, 212, 226, 304, 416
CviQI	GTAC	3 cut(s)	23, 449, 700
DdeI	CTNAG	3 cut(s)	48, 78, 146
DpnI	GATC	9 cut(s)	61, 164, 210, 334, 394, 480, 540, 608, 657
DpnII	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
Eco130I	CCWWGG	2 cut(s)	107, 602
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	107, 602
ErhI	CCWWGG	2 cut(s)	107, 602
FaeI	CATG	5 cut(s)	29, 215, 229, 307, 419
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	5 cut(s)	25, 211, 225, 303, 415
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	217, 368, 593
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	217, 368, 593
FspBI	CTAG	2 cut(s)	188, 423
GlaI	GCGC	2 cut(s)	38, 596
GluI	GCNGC	3 cut(s)	217, 368, 593
HaeIII	GGCC	3 cut(s)	168, 270, 670
HapII	CCGG	1 cut(s)	653
HgaI	GACGC	2 cut(s)	43, 52
HhaI	GCGC	2 cut(s)	39, 597
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	29, 215, 229, 307, 419
Hin6I	GCGC	2 cut(s)	37, 595
HinP1I	GCGC	2 cut(s)	37, 595
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	683
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	2 cut(s)	218, 358
Hpy166II	GTNNAC	5 cut(s)	23, 95, 175, 435, 702
Hpy188I	TCNGA	2 cut(s)	134, 397
Hpy188III	TCNNGA	3 cut(s)	77, 122, 280
Hpy8I	GTNNAC	5 cut(s)	23, 95, 175, 435, 702
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	50, 80, 258, 725
HpyCH4III	ACNGT	2 cut(s)	16, 259
HpyCH4V	TGCA	8 cut(s)	29, 95, 101, 195, 367, 404, 456, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 165, 197, 222, 453
HpyF3I	CTNAG	3 cut(s)	48, 78, 146
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	29, 215, 229, 307, 419
HspAI	GCGC	2 cut(s)	37, 595
Ksp22I	TGATCA	1 cut(s)	208
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	3 cut(s)	228, 379, 604
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	188, 423
MalI	GATC	9 cut(s)	61, 164, 210, 334, 394, 480, 540, 608, 657
MboI	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
MboII	GAAGA	6 cut(s)	65, 80, 279, 404, 439, 473
MfeI	CAATTG	2 cut(s)	672, 695
MflI	RGATCY	2 cut(s)	332, 478
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	3 cut(s)	638, 672, 695
MmeI	TCCRAC	2 cut(s)	244, 736
MnlI	CCTC	6 cut(s)	43, 214, 260, 308, 342, 752
MseI	TTAA	3 cut(s)	174, 621, 641
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	1 cut(s)	486
MunI	CAATTG	2 cut(s)	672, 695
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	5 cut(s)	43, 165, 197, 222, 453
NdeII	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	29, 215, 229, 307, 419
NlaIV	GGNNCC	2 cut(s)	556, 692
NspI	RCATGY	2 cut(s)	29, 229
PaqCI	CACCTGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	683
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	218, 369, 594
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	556, 692
PspPI	GGNCC	1 cut(s)	691
PsuI	RGATCY	2 cut(s)	332, 478
RsaI	GTAC	3 cut(s)	24, 450, 701
RsaNI	GTAC	3 cut(s)	23, 449, 700
SaqAI	TTAA	3 cut(s)	174, 621, 641
SatI	GCNGC	3 cut(s)	217, 368, 593
Sau3AI	GATC	9 cut(s)	59, 162, 208, 332, 392, 478, 538, 606, 655
Sau96I	GGNCC	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	9 cut(s)	100, 161, 189, 244, 319, 372, 454, 736, 769
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	691
Sse9I	AATT	3 cut(s)	638, 672, 695
SsiI	CCGC	2 cut(s)	198, 252
SspMI	CTAG	2 cut(s)	188, 423
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	2 cut(s)	107, 602
TaaI	ACNGT	2 cut(s)	16, 259
TaqI	TCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	638, 672, 695
TatI	WGTACW	2 cut(s)	22, 699
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	3 cut(s)	174, 621, 641
Tru9I	TTAA	3 cut(s)	174, 621, 641
TscAI	CASTG	4 cut(s)	25, 36, 97, 616
TseI	GCWGC	3 cut(s)	216, 367, 592
TspDTI	ATGAA	2 cut(s)	362, 404
TspRI	CASTG	4 cut(s)	25, 36, 97, 616
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	691
VspI	ATTAAT	1 cut(s)	621
XceI	RCATGY	2 cut(s)	29, 229
XspI	CTAG	2 cut(s)	188, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.