Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

24832504 .. 24833074

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1216900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAGAGCTTGATAGGGCTGGTGAATCGCATCCAGAGGGCGTGTACTGTGCTCGGTGACTACGGAGGCGGCGATAGTGCTTTTTCCTTGTGGGAAGCTCTGCCCTCTGTCGCCGTCGTCGGCGGCCAGAGTTCCGGGAAGTCTTCGGTTTTGGAGAGCATTGTTGGGCGTGACTTTCTTCCCAGAGGATATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

66

Amino Acids

6.73

Weight (kDa)

4.99

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	37 - 63	1.4e-10	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 123
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	1 cut(s)	46
AluBI	AGCT	2 cut(s)	9, 98
AluI	AGCT	2 cut(s)	9, 98
Alw21I	GWGCWC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	34, 68
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	136
BisI	GCNGC	2 cut(s)	70, 124
BlsI	GCNGC	2 cut(s)	71, 125
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	135
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	69, 123
BspANI	GGCC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	45
CviJI	RGCY	4 cut(s)	9, 19, 98, 126
CviKI_1	RGCY	4 cut(s)	9, 19, 98, 126
CviQI	GTAC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	124
FaiI	YATR	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	70, 124
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	70, 124
GluI	GCNGC	2 cut(s)	70, 124
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	135
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	34, 68
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyCH4III	ACNGT	1 cut(s)	49
LpnPI	CCDG	4 cut(s)	5, 47, 140, 148
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	56, 170
MboII	GAAGA	2 cut(s)	135, 170
MhlI	GDGCHC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	30, 59, 115, 179
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	136
NciI	CCSGG	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	56, 170
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	71, 125
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SatI	GCNGC	2 cut(s)	70, 124
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	2 cut(s)	11, 100
SfaNI	GCATC	1 cut(s)	39
SsiI	CCGC	2 cut(s)	69, 123
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	2 cut(s)	72, 126
TfiI	GAWTC	1 cut(s)	25
TseFI	GTSAC	2 cut(s)	56, 170
Tsp45I	GTSAC	2 cut(s)	56, 170
TspGWI	ACGGA	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.