Rh4CG166700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000383
Physical Location & Seq
Reverse (-)
36733679 .. 36734503
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG166700.1

Sequence Viewer

Length: 348 bp
ATGAAGGGAGCCAGGGCTTTGGCCTCGTCGGTGGAGAGGGTGCCGAAGTGCCTCCAGGGAGAGGAGGGACTGCTGAGGTTCTTGATAATAATGCCCACGAAGGCCAACGTCCGGCAACAACAGGGCGCCCTTTTCAGCAGCAGAAGCGCCGGTGTTCTTAGCCTTGAGGACCTCCATCACGCGATCGCTGATCTCGTCGGAGTAGATCGCTCCGACAATCGTTCTGGAGACGGCGAAGGCGTCTTCCTCGAAGAGGCGAGCCTCGACTTCGGCCTCGTCGGAAGTGGTGAGAAAATTGAACAGAAGGTCCACGGCGGTGTTGCGGAAGACCATGGTCGGCAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.28

Weight (kDa)

5.35

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 40, 125
AccII CGCG 1 cut(s) 182
AciI CCGC 2 cut(s) 315, 323
AcyI GRCGYC 2 cut(s) 126, 240
AfiI CCNNNNNNNGG 3 cut(s) 61, 111, 253
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 2 cut(s) 11, 54
AleI CACNNNNGTG 1 cut(s) 315
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 3 cut(s) 21, 102, 271
ApeKI GCWGC 1 cut(s) 138
AsiSI GCGATCGC 1 cut(s) 186
AspLEI GCGC 2 cut(s) 128, 149
AspS9I GGNCC 2 cut(s) 169, 307
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 169, 307
BanI GGYRCC 2 cut(s) 40, 125
BbsI GAAGAC 2 cut(s) 235, 333
BbvCI CCTCAGC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 183
BceAI ACGGC 2 cut(s) 247, 328
BciT130I CCWGG 2 cut(s) 13, 56
BcoDI GTCTC 1 cut(s) 222
BfoI RGCGCY 2 cut(s) 129, 150
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 13, 56
Bme18I GGWCC 2 cut(s) 169, 307
BmgT120I GGNCC 2 cut(s) 169, 307
BmiI GGNNCC 3 cut(s) 10, 42, 127
BmrFI CCNGG 2 cut(s) 13, 56
BoxI GACNNNNGTC 1 cut(s) 333
BpiI GAAGAC 2 cut(s) 235, 333
BpmI CTGGAG 2 cut(s) 38, 246
Bpu10I CCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 185
BsaHI GRCGYC 2 cut(s) 126, 240
BsaJI CCNNGG 4 cut(s) 12, 55, 310, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 111, 253
Bse118I RCCGGY 1 cut(s) 149
BseBI CCWGG 2 cut(s) 13, 56
BseDI CCNNGG 4 cut(s) 12, 55, 310, 331
BseLI CCNNNNNNNGG 3 cut(s) 61, 111, 253
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 23, 104, 273
BshNI GGYRCC 2 cut(s) 40, 125
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 112, 150
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 61, 111, 253
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 3 cut(s) 23, 104, 273
Bsp143I GATC 3 cut(s) 183, 190, 205
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 2 cut(s) 315, 323
BspANI GGCC 3 cut(s) 23, 104, 273
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 3 cut(s) 10, 42, 127
BspT107I GGYRCC 2 cut(s) 40, 125
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 12, 55, 310, 331
BssMI GATC 3 cut(s) 183, 190, 205
BssNI GRCGYC 2 cut(s) 126, 240
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 13, 56
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 2 cut(s) 126, 240
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 74, 158
BstDSI CCRYGG 2 cut(s) 310, 331
BstENI CCTNNNNNAGG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 2 cut(s) 129, 150
BstHHI GCGC 2 cut(s) 128, 149
BstKTI GATC 3 cut(s) 186, 193, 208
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 183, 190, 205
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 2 cut(s) 13, 56
BstPAI GACNNNNGTC 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 11, 54
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 2 cut(s) 235, 333
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 3 cut(s) 23, 104, 273
BtgI CCRYGG 2 cut(s) 310, 331
Cac8I GCNNGC 1 cut(s) 259
CfoI GCGC 2 cut(s) 128, 149
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 169, 307
CseI GACGC 1 cut(s) 229
CviAII CATG 1 cut(s) 332
CviJI RGCY 7 cut(s) 11, 17, 23, 104, 162, 261, 273
CviKI_1 RGCY 7 cut(s) 11, 17, 23, 104, 162, 261, 273
DdeI CTNAG 2 cut(s) 74, 158
DinI GGCGCC 1 cut(s) 127
DpnI GATC 3 cut(s) 185, 192, 207
DpnII GATC 3 cut(s) 183, 190, 205
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 169, 307
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 11, 54
EcoT14I CCWWGG 1 cut(s) 331
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 1 cut(s) 335
FaiI YATR 1 cut(s) 333
FaqI GGGAC 1 cut(s) 81
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
GlaI GCGC 2 cut(s) 127, 148
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 2 cut(s) 38, 246
HaeII RGCGCY 2 cut(s) 129, 150
HaeIII GGCC 3 cut(s) 23, 104, 273
HapII CCGG 2 cut(s) 112, 150
HgaI GACGC 1 cut(s) 229
HhaI GCGC 2 cut(s) 128, 149
Hin1I GRCGYC 2 cut(s) 126, 240
Hin1II CATG 1 cut(s) 335
Hin6I GCGC 2 cut(s) 126, 147
HinP1I GCGC 2 cut(s) 126, 147
HpaII CCGG 2 cut(s) 112, 150
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 200, 214, 281
Hpy188III TCNNGA 2 cut(s) 82, 225
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 3 cut(s) 31, 200, 281
HpyAV CCTTC 3 cut(s) 94, 230, 298
HpyCH4IV ACGT 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 74, 158
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 2 cut(s) 126, 240
Hsp92II CATG 1 cut(s) 335
HspAI GCGC 2 cut(s) 126, 147
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 183, 190, 205
LmnI GCTCC 2 cut(s) 8, 215
LpnPI CCDG 7 cut(s) 25, 41, 68, 107, 125, 163, 210
Lsp1109I GCAGC 1 cut(s) 150
MaeII ACGT 1 cut(s) 108
MalI GATC 3 cut(s) 185, 192, 207
MboI GATC 3 cut(s) 183, 190, 205
MboII GAAGA 3 cut(s) 235, 263, 338
MluCI AATT 1 cut(s) 294
Mly113I GGCGCC 1 cut(s) 126
MmeI TCCRAC 3 cut(s) 178, 237, 259
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 2 cut(s) 112, 150
MspR9I CCNGG 2 cut(s) 13, 56
MvaI CCWGG 2 cut(s) 13, 56
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 144
NarI GGCGCC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 331
NdeII GATC 3 cut(s) 183, 190, 205
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 3 cut(s) 10, 42, 127
OliI CACNNNNGTG 1 cut(s) 315
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 237
PkrI GCNGC 1 cut(s) 140
Ple19I CGATCG 1 cut(s) 186
PluTI GGCGCC 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 11, 54
PspGI CCWGG 2 cut(s) 11, 54
PspN4I GGNNCC 3 cut(s) 10, 42, 127
PspPI GGNCC 2 cut(s) 169, 307
PspPPI RGGWCCY 1 cut(s) 169
PvuI CGATCG 1 cut(s) 186
RgaI GCGATCGC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 3 cut(s) 183, 190, 205
Sau96I GGNCC 2 cut(s) 169, 307
ScrFI CCNGG 2 cut(s) 13, 56
SetI ASST 4 cut(s) 80, 111, 174, 309
SfaAI GCGATCGC 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 127
SgfI GCGATCGC 1 cut(s) 186
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 2 cut(s) 169, 307
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 294
SsiI CCGC 2 cut(s) 315, 323
SspDI GGCGCC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 11, 54
StyI CCWWGG 1 cut(s) 331
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 249, 264
TasI AATT 1 cut(s) 294
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 169, 307
XagI CCTNNNNNAGG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.