Rmu_sc0014161.1_g000004
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014161.1
Physical Location & Seq
Forward (+)
19202 .. 21168
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014161.1_g000004.1.cds

Sequence Viewer

Length: 1101 bp
atgaaagagaccaacatcgttcaggcgaacagcacggagactaacgtcattccgaccactaacacagaaacctacggcgtttcggcgaccaatacagaggtcaacgtcattccggcgaccacggagaccaacgacttcagctccgttttctcatattacacccaagctctctgcttcaaattctcttcgggccaacagcttctagactgcacaaatcaggtcgaaaatgagtccaagtctactactcgttccccttgggttgcgggaacagcttccttggacggctcaagagaatggatgtacaaagggtccaacaaaaaagcctatcacaaaaagcccaaacgttctcacctcactttctttctttttgctttatctcgcgaaaagcctgagcaagaaggcagtccacccgcatatcgttggtgggcggatcgcgattatctcggaaacaaatacgctgagattggtaacggggaatcatactcgggagtaccgagggtgctggaattgagtaacggcgacgcagtatcacgctttgcccttgctcccgaattcgtcccttcttcttcaactgcctgtaaccagccccagcaccagcgtcaacctccaaagcgtcctccaccgctctacaagacggagttttgtcggaaaacatcttgctcgaagggagacctgtgtgactttgcccatagtgttgacgagattcgcatgccacccaagttcccctcaaagtgcaaatggatggatggcctttggggcacatttgccaccctacagtttaactgcatcagacagaggactggatgtttcttttacagcatgatcggcctcgttaaccgaatccagctagccggcgccgctttcggtgatcacggcagcgagggcatgtcactctgggaagctctcccttccgttaccgtcgtcggaggccaggttttccactcccaccttttaatttctgtcaatttttctattcgattgtttggacataagtctcgcattggttcttatatcaacttattgtgtatgacagagttccaggaagtcttccgtttgggaaagcatggtgaggagaggtttcttgcctcgtggatctggtaa

Protein Analysis

366

Amino Acids

41.2

Weight (kDa)

8.6

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 625
AccI GTMKAC 1 cut(s) 239
AccII CGCG 2 cut(s) 381, 435
AciI CCGC 5 cut(s) 263, 411, 428, 623, 858
AclI AACGTT 1 cut(s) 343
AclWI GGATC 2 cut(s) 438, 1100
AcsI RAATTY 2 cut(s) 179, 551
AcuI CTGAAG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 2 cut(s) 302, 492
AgsI TTSAA 2 cut(s) 178, 570
AjnI CCWGG 2 cut(s) 930, 1038
AluBI AGCT 6 cut(s) 141, 167, 199, 272, 847, 902
AluI AGCT 6 cut(s) 141, 167, 199, 272, 847, 902
Alw26I GTCTC 5 cut(s) 2, 32, 119, 663, 999
AlwI GGATC 2 cut(s) 438, 1100
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 4 cut(s) 190, 748, 826, 928
ApeKI GCWGC 1 cut(s) 876
ApoI RAATTY 2 cut(s) 179, 551
Asp700I GAANNNNTTC 1 cut(s) 271
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 190, 309
AsuHPI GGTGA 3 cut(s) 341, 878, 1079
AsuNHI GCTAGC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 854
BauI CACGAG 1 cut(s) 1087
BbsI GAAGAC 1 cut(s) 1039
BbvI GCAGC 1 cut(s) 888
BccI CCATC 2 cut(s) 736, 740
BceAI ACGGC 4 cut(s) 91, 298, 532, 889
BciT130I CCWGG 2 cut(s) 932, 1040
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 5 cut(s) 2, 32, 119, 663, 999
BfaI CTAG 2 cut(s) 203, 848
BfmI CTRYAG 1 cut(s) 773
BfoI RGCGCY 1 cut(s) 858
BglI GCCNNNNNGGC 1 cut(s) 756
BisI GCNGC 2 cut(s) 858, 877
BlsI GCNGC 2 cut(s) 859, 878
Bme1390I CCNGG 2 cut(s) 932, 1040
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 190, 309
BmiI GGNNCC 2 cut(s) 310, 856
BmrFI CCNGG 2 cut(s) 932, 1040
BmsI GCATC 1 cut(s) 795
BmtI GCTAGC 1 cut(s) 851
BoxI GACNNNNGTC 2 cut(s) 44, 991
BpiI GAAGAC 1 cut(s) 1039
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 855
BsaI GGTCTC 3 cut(s) 2, 119, 663
BsaJI CCNNGG 4 cut(s) 120, 254, 276, 494
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 918, 948
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 1 cut(s) 805
BseBI CCWGG 2 cut(s) 932, 1040
BseDI CCNNGG 4 cut(s) 120, 254, 276, 494
BseGI GGATG 4 cut(s) 303, 747, 751, 809
BseMII CTCAG 2 cut(s) 381, 450
BseNI ACTGG 1 cut(s) 805
BseRI GAGGAG 1 cut(s) 1085
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 1 cut(s) 888
BseYI CCCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 193
Bsh1236I CGCG 2 cut(s) 381, 435
BshFI GGCC 4 cut(s) 192, 750, 828, 930
BshNI GGYRCC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 2 cut(s) 113, 852
BslFI GGGAC 1 cut(s) 542
BsmAI GTCTC 5 cut(s) 2, 32, 119, 663, 999
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 4 cut(s) 192, 750, 828, 930
Bso31I GGTCTC 3 cut(s) 2, 119, 663
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 4 cut(s) 430, 822, 868, 1092
Bsp68I TCGCGA 2 cut(s) 381, 435
BspACI CCGC 5 cut(s) 263, 411, 428, 623, 858
BspANI GGCC 4 cut(s) 192, 750, 828, 930
BspCNI CTCAG 2 cut(s) 382, 451
BspFNI CGCG 2 cut(s) 381, 435
BspLI GGNNCC 2 cut(s) 310, 856
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 2 cut(s) 438, 1100
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 3 cut(s) 2, 119, 663
BsrBI CCGCTC 1 cut(s) 625
BsrFI RCCGGY 1 cut(s) 851
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 805
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 4 cut(s) 120, 254, 276, 494
BssMI GATC 4 cut(s) 430, 822, 868, 1092
BssNI GRCGYC 1 cut(s) 855
BssSI CACGAG 1 cut(s) 1087
BssT1I CCWWGG 2 cut(s) 254, 276
Bst2BI CACGAG 1 cut(s) 1087
Bst2UI CCWGG 2 cut(s) 932, 1040
Bst4CI ACNGT 2 cut(s) 777, 919
Bst6I CTCTTC 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 855
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 710, 849, 853
BstDEI CTNAG 2 cut(s) 390, 459
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 4 cut(s) 303, 747, 751, 809
BstFNI CGCG 2 cut(s) 381, 435
BstH2I RGCGCY 1 cut(s) 858
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 4 cut(s) 433, 825, 871, 1095
BstMAI GTCTC 5 cut(s) 2, 32, 119, 663, 999
BstMBI GATC 4 cut(s) 430, 822, 868, 1092
BstMWI GCNNNNNNNGC 5 cut(s) 269, 756, 825, 857, 882
BstNI CCWGG 2 cut(s) 932, 1040
BstNSI RCATGY 2 cut(s) 712, 889
BstPAI GACNNNNGTC 2 cut(s) 44, 991
BstSCI CCNGG 2 cut(s) 930, 1038
BstSFI CTRYAG 1 cut(s) 773
BstSLI GKGCMC 1 cut(s) 761
BstUI CGCG 2 cut(s) 381, 435
BstV1I GCAGC 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 1039
BstX2I RGATCY 1 cut(s) 1092
BstYI RGATCY 1 cut(s) 1092
BsuRI GGCC 4 cut(s) 192, 750, 828, 930
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 4 cut(s) 303, 747, 751, 809
BtuMI TCGCGA 2 cut(s) 381, 435
Cac8I GCNNGC 3 cut(s) 710, 849, 853
CfoI GCGC 1 cut(s) 857
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 2 cut(s) 190, 309
CseI GACGC 3 cut(s) 530, 587, 602
Csp6I GTAC 2 cut(s) 301, 491
CviAII CATG 4 cut(s) 709, 820, 886, 1064
CviQI GTAC 2 cut(s) 301, 491
DdeI CTNAG 2 cut(s) 390, 459
DinI GGCGCC 1 cut(s) 856
DpnI GATC 4 cut(s) 432, 824, 870, 1094
DpnII GATC 4 cut(s) 430, 822, 868, 1092
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 443
Eco130I CCWWGG 2 cut(s) 254, 276
Eco31I GGTCTC 3 cut(s) 2, 119, 663
Eco47I GGWCC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 930, 1038
EcoT14I CCWWGG 2 cut(s) 254, 276
EgeI GGCGCC 1 cut(s) 856
EheI GGCGCC 1 cut(s) 856
ErhI CCWWGG 2 cut(s) 254, 276
FaeI CATG 4 cut(s) 712, 823, 889, 1067
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 708, 819, 885, 1063
FauI CCCGC 2 cut(s) 256, 418
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 858, 877
FokI GGATG 4 cut(s) 310, 754, 758, 816
Fsp4HI GCNGC 2 cut(s) 858, 877
FspBI CTAG 2 cut(s) 203, 848
GlaI GCGC 1 cut(s) 856
GluI GCNGC 2 cut(s) 858, 877
GsaI CCCAGC 1 cut(s) 592
HaeII RGCGCY 1 cut(s) 858
HaeIII GGCC 4 cut(s) 192, 750, 828, 930
HapII CCGG 2 cut(s) 113, 852
HgaI GACGC 3 cut(s) 530, 587, 602
HhaI GCGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 4 cut(s) 712, 823, 889, 1067
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 4 cut(s) 103, 602, 697, 835
HindII GTYRAC 4 cut(s) 103, 602, 697, 835
HinfI GANTC 4 cut(s) 230, 476, 703, 840
HpaI GTTAAC 1 cut(s) 835
HpaII CCGG 2 cut(s) 113, 852
HphI GGTGA 3 cut(s) 341, 878, 1079
Hpy166II GTNNAC 6 cut(s) 103, 240, 407, 602, 697, 835
Hpy188I TCNGA 5 cut(s) 54, 446, 648, 791, 926
Hpy188III TCNNGA 6 cut(s) 203, 288, 380, 434, 486, 548
Hpy8I GTNNAC 6 cut(s) 103, 240, 407, 602, 697, 835
Hpy99I CGWCG 3 cut(s) 524, 923, 926
HpyAV CCTTC 4 cut(s) 392, 570, 658, 918
HpyCH4III ACNGT 2 cut(s) 777, 919
HpyCH4IV ACGT 3 cut(s) 45, 105, 343
HpyCH4V TGCA 3 cut(s) 210, 735, 786
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 756, 825, 857, 882
HpyF3I CTNAG 2 cut(s) 390, 459
HpySE526I ACGT 3 cut(s) 45, 105, 343
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 4 cut(s) 712, 823, 889, 1067
HspAI GCGC 1 cut(s) 855
KasI GGCGCC 1 cut(s) 854
KroI GCCGGC 1 cut(s) 851
KroNI GCCGGC 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 868
KspAI GTTAAC 1 cut(s) 835
Kzo9I GATC 4 cut(s) 430, 822, 868, 1092
LmnI GCTCC 2 cut(s) 146, 550
Lsp1109I GCAGC 1 cut(s) 888
LweI GCATC 1 cut(s) 795
MaeI CTAG 2 cut(s) 203, 848
MaeII ACGT 3 cut(s) 45, 105, 343
MaeIII GTNAC 6 cut(s) 467, 512, 578, 677, 888, 913
MalI GATC 4 cut(s) 432, 824, 870, 1094
MbiI CCGCTC 1 cut(s) 625
MboI GATC 4 cut(s) 430, 822, 868, 1092
MboII GAAGA 4 cut(s) 177, 555, 558, 1039
MflI RGATCY 1 cut(s) 1092
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 5 cut(s) 179, 506, 551, 954, 964
Mly113I GGCGCC 1 cut(s) 855
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 4 cut(s) 77, 336, 626, 904
MroNI GCCGGC 1 cut(s) 851
MroXI GAANNNNTTC 1 cut(s) 271
MseI TTAA 3 cut(s) 780, 834, 953
MspI CCGG 2 cut(s) 113, 852
MspR9I CCNGG 2 cut(s) 932, 1040
MvaI CCWGG 2 cut(s) 932, 1040
MvnI CGCG 2 cut(s) 381, 435
MwoI GCNNNNNNNGC 5 cut(s) 269, 756, 825, 857, 882
NaeI GCCGGC 1 cut(s) 853
NarI GGCGCC 1 cut(s) 855
NdeII GATC 4 cut(s) 430, 822, 868, 1092
NgoMIV GCCGGC 1 cut(s) 851
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 4 cut(s) 712, 823, 889, 1067
NlaIV GGNNCC 2 cut(s) 310, 856
NmuCI GTSAC 2 cut(s) 677, 888
NruI TCGCGA 2 cut(s) 381, 435
NspI RCATGY 2 cut(s) 712, 889
PaeI GCATGC 1 cut(s) 712
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PdiI GCCGGC 1 cut(s) 853
PdmI GAANNNNTTC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 476, 703, 840
PfoI TCCNGGA 1 cut(s) 1038
PkrI GCNGC 2 cut(s) 859, 878
PleI GAGTC 1 cut(s) 238
PluTI GGCGCC 1 cut(s) 858
PpsI GAGTC 1 cut(s) 238
PshAI GACNNNNGTC 2 cut(s) 44, 991
Psp1406I AACGTT 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 930, 1038
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 2 cut(s) 930, 1038
PspN4I GGNNCC 2 cut(s) 310, 856
PspPI GGNCC 2 cut(s) 190, 309
PsuI RGATCY 1 cut(s) 1092
RruI TCGCGA 2 cut(s) 381, 435
RsaI GTAC 2 cut(s) 302, 492
RsaNI GTAC 2 cut(s) 301, 491
SaqAI TTAA 3 cut(s) 780, 834, 953
SatI GCNGC 2 cut(s) 858, 877
Sau3AI GATC 4 cut(s) 430, 822, 868, 1092
Sau96I GGNCC 2 cut(s) 190, 309
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 932, 1040
SduI GDGCHC 1 cut(s) 761
SfaNI GCATC 1 cut(s) 795
SfcI CTRYAG 1 cut(s) 773
SfoI GGCGCC 1 cut(s) 856
SinI GGWCC 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SphI GCATGC 1 cut(s) 712
Sse9I AATT 5 cut(s) 179, 506, 551, 954, 964
SsiI CCGC 5 cut(s) 263, 411, 428, 623, 858
SspDI GGCGCC 1 cut(s) 854
SspMI CTAG 2 cut(s) 203, 848
StyD4I CCNGG 2 cut(s) 930, 1038
StyI CCWWGG 2 cut(s) 254, 276
TaaI ACNGT 2 cut(s) 777, 919
TaiI ACGT 3 cut(s) 48, 108, 346
TaqI TCGA 3 cut(s) 222, 662, 976
TasI AATT 5 cut(s) 179, 506, 551, 954, 964
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 3 cut(s) 476, 703, 840
Tru1I TTAA 3 cut(s) 780, 834, 953
Tru9I TTAA 3 cut(s) 780, 834, 953
TseFI GTSAC 2 cut(s) 677, 888
TseI GCWGC 1 cut(s) 876
Tsp45I GTSAC 2 cut(s) 677, 888
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 6 cut(s) 50, 133, 137, 650, 901, 1040
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 2 cut(s) 179, 551
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 2 cut(s) 712, 889
XmiI GTMKAC 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 271
XspI CTAG 2 cut(s) 203, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.