Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003006.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

88456 .. 88788

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003006.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggagacttcgtgtgcgttttcaataaaactcctctctttctctctccaagaaatttccaaaaccatagggcttcaccgtccggttgcctgtaagatccacccagccatggctgacgagccctcagtggcaccaccgcaaccgccttctccttcatcctccaatttgcccctcggaaactctgtgatccccatagtgaacaagctccaggacatcttcgcgcagcttggttcccaatccaccatcgagctccctcaggtcgccgttgtcggcagccagagtagcggcaagtccagtgtgctcgaggcccttgtaggccgcgatgtttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

110

Amino Acids

11.46

Weight (kDa)

6.03

Isoelectric Point (pI)

76.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	2 cut(s)	221, 321
AciI	CCGC	4 cut(s)	137, 143, 285, 319
AclWI	GGATC	2 cut(s)	91, 181
AcsI	RAATTY	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	205, 226, 250
AluI	AGCT	3 cut(s)	205, 226, 250
Alw21I	GWGCWC	2 cut(s)	252, 303
AlwI	GGATC	2 cut(s)	91, 181
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	306, 316
ApeKI	GCWGC	2 cut(s)	223, 273
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	123, 252
Bbv12I	GWGCWC	2 cut(s)	252, 303
BbvI	GCAGC	2 cut(s)	235, 285
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	209
BisI	GCNGC	4 cut(s)	224, 274, 286, 319
BlsI	GCNGC	4 cut(s)	225, 275, 287, 320
Bme1390I	CCNGG	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	132, 232
BmrFI	CCNGG	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	108, 172
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	108, 172
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	138, 269
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	235, 285
BseYI	CCCAGC	1 cut(s)	103
Bsh1236I	CGCG	2 cut(s)	221, 321
BshFI	GGCC	2 cut(s)	308, 318
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	252, 303
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	2 cut(s)	308, 318
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	123, 252, 303
Bsp143I	GATC	2 cut(s)	96, 186
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	4 cut(s)	137, 143, 285, 319
BspANI	GGCC	2 cut(s)	308, 318
BspCNI	CTCAG	2 cut(s)	137, 268
BspFNI	CGCG	2 cut(s)	221, 321
BspLI	GGNNCC	2 cut(s)	132, 232
BspPI	GGATC	2 cut(s)	91, 181
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	108, 172
BssMI	GATC	2 cut(s)	96, 186
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	124, 255
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	2 cut(s)	221, 321
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	99, 189
BstMBI	GATC	2 cut(s)	96, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	2 cut(s)	221, 321
BstV1I	GCAGC	2 cut(s)	235, 285
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	308, 318
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	132, 301
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	307
CviAII	CATG	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	124, 255
DpnI	GATC	2 cut(s)	98, 188
DpnII	GATC	2 cut(s)	96, 186
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	123, 252
Eco53kI	GAGCTC	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	123, 252
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	112
FaiI	YATR	3 cut(s)	68, 110, 194
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	224, 274, 286, 319
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	2 cut(s)	123, 252
Fsp4HI	GCNGC	4 cut(s)	224, 274, 286, 319
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	4 cut(s)	224, 274, 286, 319
GsaI	CCCAGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	308, 318
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	156, 162
HpyCH4III	ACNGT	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	124, 255
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	96, 186
LmnI	GCTCC	2 cut(s)	210, 255
LpnPI	CCDG	8 cut(s)	96, 103, 117, 194, 221, 242, 290, 307
Lsp1109I	GCAGC	2 cut(s)	235, 285
MalI	GATC	2 cut(s)	98, 188
MboI	GATC	2 cut(s)	96, 186
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	123, 252, 303
MluCI	AATT	2 cut(s)	54, 163
MnlI	CCTC	6 cut(s)	44, 133, 169, 182, 264, 298
MseI	TTAA	1 cut(s)	331
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	2 cut(s)	221, 321
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	96, 186
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	132, 232
PaeR7I	CTCGAG	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	225, 275, 287, 320
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	132, 232
PspPI	GGNCC	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	4 cut(s)	224, 274, 286, 319
Sau3AI	GATC	2 cut(s)	96, 186
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	3 cut(s)	123, 252, 303
SetI	ASST	4 cut(s)	207, 228, 252, 261
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	54, 163
SsiI	CCGC	4 cut(s)	137, 143, 285, 319
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	246, 303
TasI	AATT	2 cut(s)	54, 163
TauI	GCSGC	2 cut(s)	288, 321
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TscAI	CASTG	2 cut(s)	132, 301
TseI	GCWGC	2 cut(s)	223, 273
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	132, 301
XapI	RAATTY	1 cut(s)	54
XhoI	CTCGAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.