Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

64635231 .. 64639386

Gene Structure 4156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCAGATTGGAGAGCTTGATCGGCTTTGTCAACCGAACCCAGCGCGCCTGCACCTCCCTGGGTGATCACGGCAGCGAGGGCATGTCCCTCTGGGAAGCTCTCCCTTCCATTGATGTCGTCGGAGACCAGGATCAAGTTCAGCATGGTCTGATGACACCTGTTTCTGATCTGGCCCTTGTGTCTATGTTCGATGGTGGTGATCGACGTGAGTATTGCGGTGGTGGCAGGCTAGTTTCTCACTCGTCTGCTAGAAGCGGTGGTGTAGGCTGGAAGACAAATGATGACGATGATGGTGATGGTGGGTCGGATCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

107

Amino Acids

11.14

Weight (kDa)

4.42

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	219, 258
AclWI	GGATC	2 cut(s)	141, 318
AcoI	YGGCCR	1 cut(s)	3
AjiI	CACGTC	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	60, 129
AluBI	AGCT	2 cut(s)	18, 101
AluI	AGCT	2 cut(s)	18, 101
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	141, 318
AoxI	GGCC	2 cut(s)	3, 174
ApeKI	GCWGC	1 cut(s)	75
AspLEI	GCGC	2 cut(s)	48, 50
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	77, 212, 308
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	3 cut(s)	188, 287, 293
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	62, 131
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	233, 252
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	62, 131
BmgBI	CACGTC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	62, 131
BpiI	GAAGAC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	60, 61
BseBI	CCWGG	2 cut(s)	62, 131
BseDI	CCNNGG	2 cut(s)	60, 61
BsePI	GCGCGC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	5, 176
BslFI	GGGAC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	5, 176
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
BspACI	CCGC	2 cut(s)	219, 258
BspANI	GGCC	2 cut(s)	5, 176
BspFNI	CGCG	1 cut(s)	48
BspPI	GGATC	2 cut(s)	141, 318
BspTNI	GGTCTC	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	60, 61
BssHII	GCGCGC	1 cut(s)	46
BssMI	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
Bst2UI	CCWGG	2 cut(s)	62, 131
BstC8I	GCNNGC	3 cut(s)	48, 52, 230
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	48, 50
BstKTI	GATC	6 cut(s)	24, 70, 136, 172, 205, 313
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 81, 225
BstNI	CCWGG	2 cut(s)	62, 131
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	60, 129
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	5, 176
BtrI	CACGTC	1 cut(s)	209
Cac8I	GCNNGC	3 cut(s)	48, 52, 230
CfoI	GCGC	2 cut(s)	48, 50
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	2 cut(s)	85, 146
CviJI	RGCY	8 cut(s)	5, 18, 27, 101, 176, 232, 270, 318
CviKI_1	RGCY	8 cut(s)	5, 18, 27, 101, 176, 232, 270, 318
DpnI	GATC	6 cut(s)	23, 69, 135, 171, 204, 312
DpnII	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	60, 129
FaeI	CATG	2 cut(s)	88, 149
FaiI	YATR	3 cut(s)	86, 147, 188
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	84, 145
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	2 cut(s)	233, 252
GlaI	GCGC	2 cut(s)	47, 49
GluI	GCNGC	1 cut(s)	76
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	5, 176
HhaI	GCGC	2 cut(s)	48, 50
Hin1II	CATG	2 cut(s)	88, 149
Hin6I	GCGC	2 cut(s)	46, 48
HinP1I	GCGC	2 cut(s)	46, 48
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HphI	GGTGA	3 cut(s)	77, 212, 308
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	125, 153, 169, 310
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	125, 210
HpyAV	CCTTC	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 81, 225
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	88, 149
HspAI	GCGC	2 cut(s)	46, 48
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
Lsp1109I	GCAGC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	233, 252
MaeII	ACGT	1 cut(s)	208
MalI	GATC	6 cut(s)	23, 69, 135, 171, 204, 312
MboI	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	103, 288
MnlI	CCTC	3 cut(s)	67, 73, 101
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	62, 131
MvaI	CCWGG	2 cut(s)	62, 131
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	24, 81, 225
NdeII	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
NlaIII	CATG	2 cut(s)	88, 149
NspI	RCATGY	1 cut(s)	88
PasI	CCCWGGG	1 cut(s)	61
PauI	GCGCGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	60, 129
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	60, 129
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	310
PteI	GCGCGC	1 cut(s)	46
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	6 cut(s)	21, 67, 133, 169, 202, 310
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	62, 131
SetI	ASST	5 cut(s)	20, 59, 103, 163, 211
SsiI	CCGC	2 cut(s)	219, 258
SspMI	CTAG	2 cut(s)	233, 252
StyD4I	CCNGG	2 cut(s)	60, 129
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	192, 205
TseI	GCWGC	1 cut(s)	75
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	2 cut(s)	233, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.