Rorug07G0155300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000383
Physical Location & Seq
Reverse (-)
12301652 .. 12302762
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0155300.1

Sequence Viewer

Length: 561 bp
ATGTTGGAATCAGAGAGGTTCAAGAAAATCCAGAAGAACAGGAAATGCTTTGCATACATTGGAATCTTCATTGTGTTCCAAATCATAGTCATGACCGTTTTCGGATTGACCGTGATGAAGATCAAAACCCCGAGCGTGAGGCTGAGGTCTGTGACGGTCCAAACCATCGAAAGCACCTCCAATACTTCCTTCACCGCAACTCTCATTGCTGAAGTTGCCGTGAAGAACAAGAATTTCGGGAGCTACAGGTTCGATGCCACCACGGCTAATGTGACCTACGGGGATGTCACGTTGGGAAGAGGTGACATTATCAAGGCACGCGCCGGTTTGAAGAAGACGAAGAGATTGAATGTGACCATTGACGTAAGCTCGAGTGGGGTGTCGGATAACAGCCTTGCCACTGAGCTGACTTCAGGGAATGTGACACTGAGGGCTCTTTCGAGGGTGACTGGTAAGGTGTCATTGATGGGGATGATGAAGAAGAGGAAGACCGCGAATATGAACTGCTCGATGATTGTTAATGTTCCAAACAAGGTTGTTTACGATTTGACTTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.47

Weight (kDa)

10.24

Isoelectric Point (pI)

20.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 321, 494
AciI CCGC 2 cut(s) 195, 492
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 231, 396
AgsI TTSAA 3 cut(s) 22, 331, 349
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 243, 369, 406
AluI AGCT 3 cut(s) 243, 369, 406
Ama87I CYCGRG 2 cut(s) 130, 370
ApoI RAATTY 1 cut(s) 232
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 184, 314, 457
AvaI CYCGRG 2 cut(s) 130, 370
AvaII GGWCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 2 cut(s) 341, 494
BbvCI CCTCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 173, 460
BceAI ACGGC 2 cut(s) 203, 279
BfmI CTRYAG 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 2 cut(s) 130, 370
BmgT120I GGNCC 1 cut(s) 157
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 2 cut(s) 341, 494
Bpu10I CCTNAGC 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 289, 477
BseJI GATNNNNATC 1 cut(s) 119
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 3 cut(s) 134, 393, 419
BseNI ACTGG 1 cut(s) 454
Bsh1236I CGCG 2 cut(s) 321, 494
BsiHKCI CYCGRG 2 cut(s) 130, 370
BsiSI CCGG 1 cut(s) 324
BsoBI CYCGRG 2 cut(s) 130, 370
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 2 cut(s) 195, 492
BspCNI CTCAG 3 cut(s) 135, 394, 420
BspFNI CGCG 2 cut(s) 321, 494
BspHI TCATGA 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 97, 112, 157
Bst6I CTCTTC 3 cut(s) 292, 335, 476
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 143, 402, 428
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 289, 477
BstFNI CGCG 2 cut(s) 321, 494
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 215, 263
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 2 cut(s) 321, 494
BstV2I GAAGAC 2 cut(s) 341, 494
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 289, 477
BtsIMutI CAGTG 2 cut(s) 399, 425
Cac8I GCNNGC 1 cut(s) 319
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 1 cut(s) 91
CviJI RGCY 7 cut(s) 142, 243, 266, 369, 393, 406, 434
CviKI_1 RGCY 7 cut(s) 142, 243, 266, 369, 393, 406, 434
DdeI CTNAG 3 cut(s) 143, 402, 428
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 3 cut(s) 292, 335, 476
EarI CTCTTC 3 cut(s) 292, 335, 476
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 231, 396
Eco88I CYCGRG 2 cut(s) 130, 370
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 55, 86, 92, 500
FatI CATG 1 cut(s) 90
FokI GGATG 2 cut(s) 296, 484
FriOI GRGCYC 1 cut(s) 436
GlaI GCGC 1 cut(s) 322
HapII CCGG 1 cut(s) 324
HhaI GCGC 1 cut(s) 323
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 2 cut(s) 8, 63
HpaII CCGG 1 cut(s) 324
HphI GGTGA 3 cut(s) 184, 314, 457
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 3 cut(s) 13, 104, 385
Hpy188III TCNNGA 4 cut(s) 22, 31, 91, 238
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 3 cut(s) 97, 112, 157
HpyCH4IV ACGT 2 cut(s) 290, 363
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 263
HpyF3I CTNAG 3 cut(s) 143, 402, 428
HpySE526I ACGT 2 cut(s) 290, 363
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 25, 44, 232, 337, 399, 435
LweI GCATC 1 cut(s) 244
MaeII ACGT 2 cut(s) 290, 363
MaeIII GTNAC 7 cut(s) 151, 271, 286, 302, 352, 421, 445
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 8 cut(s) 9, 132, 138, 187, 293, 423, 435, 477
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 324
MvnI CGCG 2 cut(s) 321, 494
MwoI GCNNNNNNNGC 2 cut(s) 215, 263
NdeII GATC 1 cut(s) 120
NlaIII CATG 1 cut(s) 94
NmuCI GTSAC 7 cut(s) 151, 271, 286, 302, 352, 421, 445
PaeR7I CTCGAG 1 cut(s) 370
PagI TCATGA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 2 cut(s) 8, 63
PspPI GGNCC 1 cut(s) 157
PspXI VCTCGAGB 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 519
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 157
SlaI CTCGAG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 1 cut(s) 232
SsiI CCGC 2 cut(s) 195, 492
TaaI ACNGT 3 cut(s) 97, 112, 157
TaiI ACGT 2 cut(s) 293, 366
TaqI TCGA 5 cut(s) 168, 252, 371, 440, 509
TasI AATT 1 cut(s) 232
TfiI GAWTC 2 cut(s) 8, 63
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 406, 432
TseFI GTSAC 7 cut(s) 151, 271, 286, 302, 352, 421, 445
Tsp45I GTSAC 7 cut(s) 151, 271, 286, 302, 352, 421, 445
TspDTI ATGAA 4 cut(s) 58, 131, 491, 515
TspRI CASTG 2 cut(s) 406, 432
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.