RLG00000030046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000383
Physical Location & Seq
Reverse (-)
53882467 .. 53888321
5855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030046

Sequence Viewer

Length: 396 bp
ATGATCTCTTACAGTAATTCACTTTATACTGAATTATGTGTTTATGGGTTAGTTTGTTTTAGGAATTTGTCCAGCTTGAATCTTGGCGAAGAGATTTCGCCAGCCCTTGGAGATCTGGGAAACTTGGAATCCATGAATTTATCAGACAATAATCTGTCTGGAGACATACCCTTCTCGATTTCAAAGCTTAAGAACCTTGAGGTTTTGAATTTGAAGAACAATCAGTTGACTGGTCCTATCGCTACAACTCTTACCCAAATTCCAAACCTTAGACCTCTGTTGGATCACCTGCAAAAACTCTTTAAGCTTAGGATCATCAATCTCATCCTCACTCCTCTTCTCTCCCATGCCGCCCCGGCTTTTCCTGATGGCCTCCTGAGCTTGAGATTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.42

Weight (kDa)

6.71

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 41 - 93 2.5e-07 Leucine rich repeat
LRR_4 PF12799 41 - 77 6.4e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 297
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 1 cut(s) 351
AclWI GGATC 2 cut(s) 291, 320
AcsI RAATTY 4 cut(s) 64, 136, 208, 258
AfiI CCNNNNNNNGG 1 cut(s) 107
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 5 cut(s) 79, 183, 208, 214, 391
AluBI AGCT 4 cut(s) 75, 187, 307, 381
AluI AGCT 4 cut(s) 75, 187, 307, 381
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 291, 320
AoxI GGCC 1 cut(s) 370
ApoI RAATTY 4 cut(s) 64, 136, 208, 258
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 233
BccI CCATC 1 cut(s) 362
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 356
BglII AGATCT 1 cut(s) 112
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 2 cut(s) 308, 377
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 106, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 106, 354
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 324
BshFI GGCC 1 cut(s) 372
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 1 cut(s) 372
Bsp143I GATC 4 cut(s) 3, 112, 283, 312
BspACI CCGC 1 cut(s) 351
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 369
BspMI ACCTGC 1 cut(s) 297
BspPI GGATC 2 cut(s) 291, 320
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 106, 354
BssMI GATC 4 cut(s) 3, 112, 283, 312
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 84, 342
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 269, 308, 377
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 4 cut(s) 6, 115, 286, 315
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 4 cut(s) 3, 112, 283, 312
BstMWI GCNNNNNNNGC 2 cut(s) 356, 378
BstSCI CCNGG 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 2 cut(s) 133, 347
CviJI RGCY 7 cut(s) 75, 104, 187, 307, 359, 372, 381
CviKI_1 RGCY 7 cut(s) 75, 104, 187, 307, 359, 372, 381
DdeI CTNAG 3 cut(s) 269, 308, 377
DpnI GATC 4 cut(s) 5, 114, 285, 314
DpnII GATC 4 cut(s) 3, 112, 283, 312
Eam1104I CTCTTC 2 cut(s) 84, 342
EarI CTCTTC 2 cut(s) 84, 342
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 136, 350
FaiI YATR 6 cut(s) 27, 37, 45, 134, 167, 348
FatI CATG 2 cut(s) 132, 346
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 356
Hin1II CATG 2 cut(s) 136, 350
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HindIII AAGCTT 2 cut(s) 185, 305
HinfI GANTC 2 cut(s) 79, 128
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 4 cut(s) 159, 175, 365, 376
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 378
HpyF3I CTNAG 3 cut(s) 269, 308, 377
Hsp92II CATG 2 cut(s) 136, 350
Kzo9I GATC 4 cut(s) 3, 112, 283, 312
LpnPI CCDG 9 cut(s) 85, 101, 114, 144, 216, 302, 369, 378, 389
MalI GATC 4 cut(s) 5, 114, 285, 314
MboI GATC 4 cut(s) 3, 112, 283, 312
MboII GAAGA 3 cut(s) 101, 226, 329
MflI RGATCY 1 cut(s) 112
MluCI AATT 6 cut(s) 16, 32, 64, 136, 208, 258
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 5 cut(s) 193, 285, 338, 345, 383
MseI TTAA 2 cut(s) 189, 303
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 356, 378
NciI CCSGG 1 cut(s) 356
NdeII GATC 4 cut(s) 3, 112, 283, 312
NlaIII CATG 2 cut(s) 136, 350
PaqCI CACCTGC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 79, 128
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 112
SaqAI TTAA 2 cut(s) 189, 303
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 4 cut(s) 3, 112, 283, 312
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 356
SetI ASST 9 cut(s) 77, 189, 198, 204, 270, 277, 291, 309, 383
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 3 cut(s) 188, 197, 382
SmoI CTYRAG 3 cut(s) 188, 197, 382
Sse9I AATT 6 cut(s) 16, 32, 64, 136, 208, 258
SsiI CCGC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 176
TasI AATT 6 cut(s) 16, 32, 64, 136, 208, 258
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 2 cut(s) 79, 128
Tru1I TTAA 2 cut(s) 189, 303
Tru9I TTAA 2 cut(s) 189, 303
TspDTI ATGAA 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 4 cut(s) 64, 136, 208, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.