Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Forward (+)

3152317 .. 3152897

Gene Structure 581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGACGGCCAAAGCAACCCAACCAAAGCTCCGAGCTCAACCTCCACTGTTACTATGGAGGCCGCCAACCTGGTTCCGGCGAAAGCCAGCCCCTCGGAGGCCGCGCTCTTCTGGGTCTCCGGAACCTCTGAGTTAGCAGGCTTGAGGGAGTGGATGGCTGGGCCATCTTTTCCGACACCTGAGCAGCCCGTTCTCCCCCCTCCGTCGTCTCCAGAACGCGCAAATGATCTATACAGAACGAGGTTATGCGTGTATAATCGGGACACTTGCCCAGATGCACAGAACTGTCAGTTTGCGCACAGCCAGGAGGAGATCCGCCTTCCAACAAGACTCATCGACGGCTTTTGCAAATACGGGAGTGGCTGTCAGTACGGAGCCAGATGTTTCTACCGGTATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

134

Amino Acids

14.65

Weight (kDa)

6.08

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccII	CGCG	2 cut(s)	104, 219
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	3 cut(s)	63, 102, 316
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	7
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	76, 97
AgeI	ACCGGT	1 cut(s)	390
AjnI	CCWGG	2 cut(s)	69, 303
AluBI	AGCT	2 cut(s)	29, 36
AluI	AGCT	2 cut(s)	29, 36
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	121, 213
AlwI	GGATC	1 cut(s)	307
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	4 cut(s)	7, 60, 99, 161
ApeKI	GCWGC	1 cut(s)	184
AsiGI	ACCGGT	1 cut(s)	390
AspLEI	GCGC	3 cut(s)	106, 221, 298
AspS9I	GGNCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	148, 172
BceAI	ACGGC	2 cut(s)	22, 355
BciT130I	CCWGG	2 cut(s)	71, 305
BcoDI	GTCTC	2 cut(s)	121, 213
BisI	GCNGC	3 cut(s)	63, 102, 185
BlsI	GCNGC	3 cut(s)	64, 103, 186
Bme1390I	CCNGG	2 cut(s)	71, 305
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	75, 124, 376
BmrFI	CCNGG	2 cut(s)	71, 305
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	2 cut(s)	119, 390
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 349, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 97
Bse118I	RCCGGY	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	71, 305
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	76, 97
BseMII	CTCAG	2 cut(s)	120, 171
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	158
Bsh1236I	CGCG	2 cut(s)	104, 219
BshFI	GGCC	4 cut(s)	9, 62, 101, 163
BshTI	ACCGGT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	3 cut(s)	77, 120, 391
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	76, 97
BsmAI	GTCTC	2 cut(s)	121, 213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	4 cut(s)	9, 62, 101, 163
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	226, 312
BspACI	CCGC	3 cut(s)	63, 102, 316
BspANI	GGCC	4 cut(s)	9, 62, 101, 163
BspCNI	CTCAG	2 cut(s)	121, 172
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	104, 219
BspLI	GGNNCC	3 cut(s)	75, 124, 376
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	226, 312
Bst2UI	CCWGG	2 cut(s)	71, 305
Bst4CI	ACNGT	2 cut(s)	49, 287
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	88, 139
BstDEI	CTNAG	2 cut(s)	129, 180
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	104, 219
BstHHI	GCGC	3 cut(s)	106, 221, 298
BstKTI	GATC	2 cut(s)	229, 315
BstMAI	GTCTC	2 cut(s)	121, 213
BstMBI	GATC	2 cut(s)	226, 312
BstNI	CCWGG	2 cut(s)	71, 305
BstSCI	CCNGG	2 cut(s)	69, 303
BstUI	CGCG	2 cut(s)	104, 219
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	4 cut(s)	9, 62, 101, 163
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	88, 139
CfoI	GCGC	3 cut(s)	106, 221, 298
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	390
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	129, 180
DpnI	GATC	2 cut(s)	228, 314
DpnII	GATC	2 cut(s)	226, 312
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	69, 303
EcoT38I	GRGCYC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	213
FaiI	YATR	4 cut(s)	56, 232, 247, 255
FaqI	GGGAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	63, 102, 185
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	63, 102, 185
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	3 cut(s)	105, 220, 297
GluI	GCNGC	3 cut(s)	63, 102, 185
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	4 cut(s)	9, 62, 101, 163
HapII	CCGG	3 cut(s)	77, 120, 391
HhaI	GCGC	3 cut(s)	106, 221, 298
Hin6I	GCGC	3 cut(s)	104, 219, 296
HinP1I	GCGC	3 cut(s)	104, 219, 296
HinfI	GANTC	1 cut(s)	330
HpaII	CCGG	3 cut(s)	77, 120, 391
Hpy188I	TCNGA	4 cut(s)	33, 97, 130, 174
Hpy188III	TCNNGA	3 cut(s)	120, 212, 260
Hpy99I	CGWCG	2 cut(s)	208, 341
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	49, 287
HpyCH4V	TGCA	2 cut(s)	278, 348
HpyF3I	CTNAG	2 cut(s)	129, 180
HspAI	GCGC	3 cut(s)	104, 219, 296
Kpn2I	TCCGGA	1 cut(s)	119
Kzo9I	GATC	2 cut(s)	226, 312
LguI	GCTCTTC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	34, 374
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	265
MabI	ACCWGGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	228, 314
MboI	GATC	2 cut(s)	226, 312
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	197, 347
MnlI	CCTC	9 cut(s)	52, 52, 91, 103, 136, 138, 210, 234, 301
MroI	TCCGGA	1 cut(s)	119
MspI	CCGG	3 cut(s)	77, 120, 391
MspR9I	CCNGG	2 cut(s)	71, 305
MvaI	CCWGG	2 cut(s)	71, 305
MvnI	CGCG	2 cut(s)	104, 219
NdeII	GATC	2 cut(s)	226, 312
NlaIV	GGNNCC	3 cut(s)	75, 124, 376
NsbI	TGCGCA	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	3 cut(s)	64, 103, 186
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	69, 303
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	69, 303
PspN4I	GGNNCC	3 cut(s)	75, 124, 376
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	113
SatI	GCNGC	3 cut(s)	63, 102, 185
Sau3AI	GATC	2 cut(s)	226, 312
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	71, 305
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	7 cut(s)	31, 38, 44, 72, 128, 181, 245
SexAI	ACCWGGT	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SsiI	CCGC	3 cut(s)	63, 102, 316
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	69, 303
TaaI	ACNGT	2 cut(s)	49, 287
TaqI	TCGA	1 cut(s)	336
TauI	GCSGC	2 cut(s)	65, 104
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	184
TspGWI	ACGGA	2 cut(s)	192, 387
TspRI	CASTG	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.