RLG00000031637
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000383
Physical Location & Seq
Reverse (-)
6949790 .. 6950199
410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031637

Sequence Viewer

Length: 306 bp
ATGACGGTGACGGAACCTTTCCAGTGGCTTTTGGGTTATCTCGGCTTTGTTTCTCGACGGGTTTTGGGTTTCCGATACACAACTCTCTTTCGGATTCAGAGAGCATGCAAGGTCCTCGGCCACCACGGCAGTGGAGACGCTAGTTCTTCTTTGCCTACCCTCTGGGAGAAGCTTCCCTTCATCGCTGTCGTTGGAGGTCAGAGTTTTGGCAAGTCGTCGGTGTTGGAATGCATTGTCGGCCGCTATTTTCTTCTGAGAGGATCAATGCGATTTTGCGCTGTTGAGAAAGAAAGTGGAATAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

102

Amino Acids

11.25

Weight (kDa)

9.73

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 61 - 88 8.1e-07 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 2 cut(s) 118, 238
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 268
AoxI GGCC 2 cut(s) 118, 238
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 126
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 115, 124
Bse1I ACTGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 115, 124
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 22
BseX3I CGGCCG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 2 cut(s) 120, 240
BsiEI CGRYCG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 2 cut(s) 120, 240
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 1 cut(s) 241
BspANI GGCC 2 cut(s) 120, 240
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 115, 124
BssMI GATC 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 260
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 126, 237
BstNSI RCATGY 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 131
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 2 cut(s) 120, 240
BtgI CCRYGG 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 29, 136
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 146
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 28, 45, 120, 172, 240
CviKI_1 RGCY 5 cut(s) 28, 45, 120, 172, 240
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 118, 238
EagI CGGCCG 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 1 cut(s) 108
FaiI YATR 2 cut(s) 106, 304
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 241
HaeIII GGCC 2 cut(s) 120, 240
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 108
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 5 cut(s) 74, 93, 99, 201, 255
Hpy188III TCNNGA 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 60, 220
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 108, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 237
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 1 cut(s) 108
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 260
LpnPI CCDG 2 cut(s) 35, 148
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 2 cut(s) 138, 242
MmeI TCCRAC 2 cut(s) 172, 204
MnlI CCTC 4 cut(s) 125, 170, 188, 251
Mph1103I ATGCAT 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 126, 237
NdeII GATC 1 cut(s) 260
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 2 cut(s) 21, 96
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 108
OliI CACNNNNGTG 1 cut(s) 129
PaeI GCATGC 1 cut(s) 108
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 129
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 112
SetI ASST 4 cut(s) 19, 114, 174, 199
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 129
SphI GCATGC 1 cut(s) 108
SsiI CCGC 1 cut(s) 241
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 1 cut(s) 55
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 94
TscAI CASTG 2 cut(s) 29, 136
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 2 cut(s) 29, 136
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XspI CTAG 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.