Rh2AG367100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000383
Physical Location & Seq
Forward (+)
54445721 .. 54446466
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG367100.1

Sequence Viewer

Length: 324 bp
ATGCCTAACACTGCTGCAGATCAGGTTGACTCGGTCAGTCTTGACATCCTCACTGGGAGCCTCGGCGGTCTCCGACGCGCTGTTTTCAACAGCAGAAGCAGCGGCGTTGTTGGAGTTGATCTCCAGGATGCGCTTGCCGACCTCATTGGAGTATATCTGCAGCATCTTCATCCAGAAGGCGTTTTATGCCCTCGGCTTCGGACAAGGTGCACTAGTGTCTGGAGAGAGGAGGAGGAGGAGGGATACGGTCAATTGGCGCTGCTTGGGAATTTTGAGCTTGAATTTCAATTTGCGGACTGCCGAGGATTAGAAAAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.81

Weight (kDa)

4.92

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000383)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica Prupe.2G283600_v2.0.a1
pyrus_communis pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 3 cut(s) 66, 102, 293
AcsI RAATTY 2 cut(s) 268, 281
AgsI TTSAA 3 cut(s) 88, 281, 287
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 208
ApaLI GTGCAC 1 cut(s) 208
ApeKI GCWGC 4 cut(s) 14, 99, 160, 259
ApoI RAATTY 2 cut(s) 268, 281
AspLEI GCGC 3 cut(s) 80, 133, 259
BaeGI GKGCMC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 111, 172, 246
BciT130I CCWGG 1 cut(s) 125
BciVI GTATCC 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 15, 158
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 5 cut(s) 15, 100, 103, 161, 260
BlsI GCNGC 5 cut(s) 16, 101, 104, 162, 261
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 118, 172
BmuI ACTGGG 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 2 cut(s) 107, 241
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 61, 191, 301
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 61, 191, 301
BseGI GGATG 3 cut(s) 45, 133, 169
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 4 cut(s) 242, 245, 248, 251
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 3 cut(s) 111, 172, 246
Bsh1236I CGCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 19, 118
BspACI CCGC 3 cut(s) 66, 102, 293
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 1 cut(s) 59
BspMAI CTGCAG 2 cut(s) 19, 162
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 3 cut(s) 61, 191, 301
BssMI GATC 2 cut(s) 19, 118
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 3 cut(s) 45, 133, 169
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 3 cut(s) 80, 133, 259
BstKTI GATC 2 cut(s) 22, 121
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 19, 118
BstMWI GCNNNNNNNGC 2 cut(s) 99, 186
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 2 cut(s) 15, 158
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 111, 172, 246
BsuI GTATCC 1 cut(s) 236
BtsCI GGATG 3 cut(s) 45, 133, 169
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 51
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 3 cut(s) 80, 133, 259
CseI GACGC 1 cut(s) 84
CviJI RGCY 3 cut(s) 60, 196, 277
CviKI_1 RGCY 3 cut(s) 60, 196, 277
DpnI GATC 2 cut(s) 21, 120
DpnII GATC 2 cut(s) 19, 118
Eco31I GGTCTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 123
FaiI YATR 2 cut(s) 154, 187
Fnu4HI GCNGC 5 cut(s) 15, 100, 103, 161, 260
FokI GGATG 3 cut(s) 32, 140, 156
Fsp4HI GCNGC 5 cut(s) 15, 100, 103, 161, 260
FspBI CTAG 1 cut(s) 213
GlaI GCGC 3 cut(s) 79, 132, 258
GluI GCNGC 5 cut(s) 15, 100, 103, 161, 260
GsuI CTGGAG 2 cut(s) 107, 241
HaeII RGCGCY 1 cut(s) 260
HgaI GACGC 1 cut(s) 84
HhaI GCGC 3 cut(s) 80, 133, 259
Hin6I GCGC 3 cut(s) 78, 131, 257
HinP1I GCGC 3 cut(s) 78, 131, 257
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 29
Hpy166II GTNNAC 2 cut(s) 28, 210
Hpy188I TCNGA 2 cut(s) 74, 201
Hpy188III TCNNGA 3 cut(s) 41, 173, 220
Hpy8I GTNNAC 2 cut(s) 28, 210
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 3 cut(s) 17, 160, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 186
HspAI GCGC 3 cut(s) 78, 131, 257
Kzo9I GATC 2 cut(s) 19, 118
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 6 cut(s) 8, 39, 110, 137, 186, 205
Lsp1109I GCAGC 3 cut(s) 111, 172, 246
LweI GCATC 2 cut(s) 118, 172
MaeI CTAG 1 cut(s) 213
MalI GATC 2 cut(s) 21, 120
MboI GATC 2 cut(s) 19, 118
MboII GAAGA 1 cut(s) 158
MfeI CAATTG 1 cut(s) 251
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 4 cut(s) 251, 268, 281, 287
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 91, 97
MspA1I CMGCKG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 99, 186
NdeII GATC 2 cut(s) 19, 118
NlaIV GGNNCC 1 cut(s) 59
NmeAIII GCCGAG 2 cut(s) 42, 172
PflFI GACNNNGTC 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 5 cut(s) 16, 101, 104, 162, 261
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 59
PstI CTGCAG 2 cut(s) 19, 162
PsyI GACNNNGTC 1 cut(s) 32
SatI GCNGC 5 cut(s) 15, 100, 103, 161, 260
Sau3AI GATC 2 cut(s) 19, 118
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 212
SetI ASST 4 cut(s) 27, 144, 209, 279
SfaNI GCATC 2 cut(s) 118, 172
SfcI CTRYAG 2 cut(s) 15, 158
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 4 cut(s) 251, 268, 281, 287
SsiI CCGC 3 cut(s) 66, 102, 293
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 248
TaqII GACCGA 1 cut(s) 22
TasI AATT 4 cut(s) 251, 268, 281, 287
TauI GCSGC 1 cut(s) 105
TscAI CASTG 2 cut(s) 16, 58
TseI GCWGC 4 cut(s) 14, 99, 160, 259
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 2 cut(s) 16, 58
Tth111I GACNNNGTC 1 cut(s) 32
VneI GTGCAC 1 cut(s) 208
XapI RAATTY 2 cut(s) 268, 281
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.