Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

55531088 .. 55531596

Gene Structure 509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCGACGAGCCCTCGGTGGCACCACCGCAACCGCCTTCTCCTTCATCCTCCAATTCGCCCCTCCGAAACTCCGTGATCCCCGTAGTGAACAAGCTCCAGGACATCTTCGCGCAGCTCGGTTCCCAATCCACCATCGAGCTCCCTCGGGTCGCCGTTGTCGGCAGCCGCAGTAGCGGCAAGTCCGGTGTGCTCGAGGCTCTTGTAGCCCGCAACTTCTTGCCCCGTGGCTCGAAATCTGCACTCACCGCCCCCTCGTTTAGATCTAGATCTGGAGGTTTCTCCCCTCTTCTCTCTCTCTCTCTCGAGGTCCAAACGACGTTATATTCAAGCCAAGGAGGAATTCTCGAGAAGAATGACTCTCCGTTTGAAGCCTTCAACTTGGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

130

Amino Acids

13.61

Weight (kDa)

9.39

Isoelectric Point (pI)

82.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 79	9.7e-08	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	1 cut(s)	113
AciI	CCGC	6 cut(s)	29, 35, 169, 177, 211, 249
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	330, 371, 379
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	3 cut(s)	97, 118, 142
AluI	AGCT	3 cut(s)	97, 118, 142
Alw21I	GWGCWC	2 cut(s)	144, 195
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	4 cut(s)	147, 194, 305, 347
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	115, 165
ApoI	RAATTY	1 cut(s)	342
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	4 cut(s)	147, 194, 305, 347
AvaII	GGWCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	2 cut(s)	15, 144
Bbv12I	GWGCWC	2 cut(s)	144, 195
BbvI	GCAGC	2 cut(s)	127, 177
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	267
BglII	AGATCT	2 cut(s)	263, 269
BisI	GCNGC	4 cut(s)	116, 166, 169, 178
BlsI	GCNGC	4 cut(s)	117, 167, 170, 179
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	4 cut(s)	147, 194, 305, 347
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	24, 124
BmrFI	CCNGG	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	2 cut(s)	83, 294
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	4 cut(s)	15, 146, 226, 334
BsaWI	WCCGGW	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	4 cut(s)	15, 146, 226, 334
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	127, 177
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	144, 195
BsiHKCI	CYCGRG	4 cut(s)	147, 194, 305, 347
BsiSI	CCGG	1 cut(s)	186
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	4 cut(s)	147, 194, 305, 347
Bsp1286I	GDGCHC	3 cut(s)	15, 144, 195
Bsp143I	GATC	3 cut(s)	78, 263, 269
BspACI	CCGC	6 cut(s)	29, 35, 169, 177, 211, 249
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	24, 124
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	22
BssECI	CCNNGG	4 cut(s)	15, 146, 226, 334
BssMI	GATC	3 cut(s)	78, 263, 269
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	3 cut(s)	81, 266, 272
BstMBI	GATC	3 cut(s)	78, 263, 269
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 177, 206, 248
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	127, 177
BstX2I	RGATCY	2 cut(s)	263, 269
BstYI	RGATCY	2 cut(s)	263, 269
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	310
DpnI	GATC	3 cut(s)	80, 265, 271
DpnII	GATC	3 cut(s)	78, 263, 269
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	15, 144
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	4 cut(s)	147, 194, 305, 347
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	15, 144
ErhI	CCWWGG	1 cut(s)	334
FaiI	YATR	1 cut(s)	325
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	4 cut(s)	116, 166, 169, 178
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	2 cut(s)	15, 144
Fsp4HI	GCNGC	4 cut(s)	116, 166, 169, 178
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	4 cut(s)	116, 166, 169, 178
GsuI	CTGGAG	2 cut(s)	83, 294
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	5 cut(s)	267, 273, 305, 347, 349
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	11, 322
HpyAV	CCTTC	3 cut(s)	48, 54, 385
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 177, 206, 248
HpySE526I	ACGT	1 cut(s)	320
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	3 cut(s)	78, 263, 269
LmnI	GCTCC	2 cut(s)	102, 147
LpnPI	CCDG	4 cut(s)	86, 113, 199, 258
Lsp1109I	GCAGC	2 cut(s)	127, 177
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	320
MalI	GATC	3 cut(s)	80, 265, 271
MboI	GATC	3 cut(s)	78, 263, 269
MboII	GAAGA	3 cut(s)	100, 281, 364
MflI	RGATCY	2 cut(s)	263, 269
MhlI	GDGCHC	3 cut(s)	15, 144, 195
MluCI	AATT	2 cut(s)	55, 342
MlyI	GAGTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	391
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	174, 177, 206, 248
NdeII	GATC	3 cut(s)	78, 263, 269
NlaIV	GGNNCC	2 cut(s)	24, 124
PaeR7I	CTCGAG	3 cut(s)	194, 305, 347
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	117, 167, 170, 179
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	24, 124
PspPI	GGNCC	1 cut(s)	310
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	263, 269
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	391
SatI	GCNGC	4 cut(s)	116, 166, 169, 178
Sau3AI	GATC	3 cut(s)	78, 263, 269
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	3 cut(s)	15, 144, 195
SetI	ASST	6 cut(s)	99, 120, 144, 280, 312, 323
Sfr274I	CTCGAG	3 cut(s)	194, 305, 347
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	3 cut(s)	194, 305, 347
SmlI	CTYRAG	3 cut(s)	194, 305, 347
SmoI	CTYRAG	3 cut(s)	194, 305, 347
Sse9I	AATT	2 cut(s)	55, 342
SsiI	CCGC	6 cut(s)	29, 35, 169, 177, 211, 249
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	334
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	5 cut(s)	138, 195, 233, 306, 348
TasI	AATT	2 cut(s)	55, 342
TauI	GCSGC	2 cut(s)	171, 180
Tru1I	TTAA	1 cut(s)	391
Tru9I	TTAA	1 cut(s)	391
TseI	GCWGC	2 cut(s)	115, 165
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	2 cut(s)	64, 354
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	266
XhoI	CTCGAG	3 cut(s)	194, 305, 347
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.