Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0000383

Physical Location & Seq

Genomic Coordinates Reverse (-)

159691 .. 161351

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggagaacctgatctcgctggtcaataaaatccaaagagcttgcacagctctcgctgaccacggcgaagctgactcgcttccctctatcgctatcggtcagctcccgattcattcctccaccttcaccacggtagcggccttagcatttgatgacatggtttcttggatgcaggaaggtgaccaggtaggaatatttgatgccacaaatagtagaaagagacagaggaatatggtcatgaaaatggctgaagtgcaatccgagctgacatggatgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006000 GO:0006002 GO:0006003 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0019318 GO:0019637 GO:0043609 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0065007 GO:0071704 GO:0071944 GO:1901135

KEGG Pathways

Metabolic & Signaling

ko00051 ko04066 ko04152 map00051 map04066 map04152

Pfam Domains

Protein Families

6PF2K CBM_20 His_Phos_1

Protein Analysis

93

Amino Acids

10.31

Weight (kDa)

4.88

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07180 AT5G07180 AT5G62230 AT5G62230
fragaria_vesca	FvH4_7g28290 FvH4_7g28290 FvH4_7g28290 FvH4_7g28290
malus_domestica	MD02G1216900.v1.1 MD07G1259500.v1.1 MD17G1114200.v1.1 MD17G1114300.v1.1
prunus_persica	Prupe.2G283600_v2.0.a1
pyrus_communis	pycom05g04060 pycom07g23280 pycom15g04040
rosa_chinensis	RchiOBHm_Chr1g0375261 RchiOBHm_Chr2g0167851 RchiOBHm_Chr4g0390421 RchiOBHm_Chr4g0390431 RchiOBHm_Chr4g0442901 RchiOBHm_Chr4g0442981 RchiOBHm_Chr7g0228991 RchiOBHm_Chr7g0239711
rosa_laevigata	RLG00000005460 RLG00000005968 RLG00000005971 RLG00000005973 RLG00000005978 RLG00000008547 RLG00000010012 RLG00000010245 RLG00000026673 RLG00000030046 RLG00000031637
rosa_multiflora	Rmu_co8166860.1_g000001 Rmu_co8410161.1_g000001 Rmu_sc0000554.1_g000034 Rmu_sc0001782.1_g000050 Rmu_sc0002096.1_g000036 Rmu_sc0003006.1_g000022 Rmu_sc0003701.1_g000003 Rmu_sc0005877.1_g000004 Rmu_sc0006329.1_g000003 Rmu_sc0006695.1_g000032 Rmu_sc0008108.1_g000003 Rmu_sc0009414.1_g000003 Rmu_sc0010356.1_g000001 Rmu_sc0014119.1_g000002 Rmu_sc0014119.1_g000003 Rmu_sc0014161.1_g000004 Rmu_sc0023009.1_g000001 Rmu_sc0036835.1_g000001 Rmu_ssc0000204.1_g000009
rosa_roxburghii	Rroxscaffold_1G00024810 Rroxscaffold_2G00110800 Rroxscaffold_2G00122430 Rroxscaffold_3G00261280 Rroxscaffold_4G00282890 Rroxscaffold_4G00330910 Rroxscaffold_5G00370350 Rroxscaffold_7G00161820
rosa_rugosa	Rorug01G0389600 Rorug01G0389700 Rorug01G0389800 Rorug01G0389900 Rorug01G0389900 Rorug01G0390000 Rorug04G0343700 Rorug07G0155300
rosa_samantha	Rh1AG400300 Rh1CG377300 Rh1DG394700 Rh2AG367100 Rh2BG612000 Rh2CG350500 Rh2DG389600 Rh3CG058100 Rh4AG396700 Rh4AG397100 Rh4AG397500 Rh4AG397600 Rh4AG397700 Rh4BG003000 Rh4BG127700 Rh4BG370500 Rh4BG393400 Rh4BG409200 Rh4CG035400 Rh4CG166700 Rh4CG408200 Rh4CG424700 Rh4DG028000 Rh4DG028100 Rh4DG403300 Rh4DG403800 Rh6DG080900 Rh7DG202700
rosa_wichuraiana	Rw1G035540 Rw4G032760 Rw4G034230 Rw4G034240 Rw4G034260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	5 cut(s)	41, 50, 71, 103, 265
AluI	AGCT	5 cut(s)	41, 50, 71, 103, 265
Alw26I	GTCTC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	118, 191
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	159, 190, 264
Bpu10I	CCTNAGC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	61, 129
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	61, 129
BseGI	GGATG	2 cut(s)	174, 279
BshFI	GGCC	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	61, 129
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	2 cut(s)	61, 129
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	174, 279
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 143, 262
BstNI	CCWGG	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	2 cut(s)	61, 129
BtsCI	GGATG	2 cut(s)	174, 279
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	237
CsiI	ACCWGGT	1 cut(s)	183
CviAII	CATG	3 cut(s)	157, 238, 270
CviJI	RGCY	7 cut(s)	41, 50, 71, 103, 140, 248, 265
CviKI_1	RGCY	7 cut(s)	41, 50, 71, 103, 140, 248, 265
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	270
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	160, 241, 273
FaiI	YATR	4 cut(s)	158, 233, 239, 271
FatI	CATG	3 cut(s)	156, 237, 269
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	280
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	160, 241, 273
HinfI	GANTC	2 cut(s)	74, 109
HphI	GGTGA	2 cut(s)	118, 191
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	106, 238
HpyAV	CCTTC	2 cut(s)	133, 170
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	45, 172, 256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 143, 262
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	160, 241, 273
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	5, 23, 158, 170, 197
LweI	GCATC	3 cut(s)	159, 190, 264
MabI	ACCWGGT	1 cut(s)	183
MaeI	CTAG	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	3 cut(s)	94, 127, 219
MslI	CAYNNNNRTG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	47, 143, 262
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	3 cut(s)	160, 241, 273
NmuCI	GTSAC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	242
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	9 cut(s)	12, 43, 52, 73, 105, 125, 181, 189, 267
SexAI	ACCWGGT	1 cut(s)	183
SfaNI	GCATC	3 cut(s)	159, 190, 264
SmiMI	CAYNNNNRTG	1 cut(s)	242
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	133
TaqII	GACCGA	1 cut(s)	86
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	101, 254
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.