Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009514

Physical Location & Seq

Genomic Coordinates Reverse (-)

55578464 .. 55579695

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCTCCAACTTTCACAGTTTTGGTTAAAGCTTGTGTTGGGGGTGCCTTTGCTTGATCAGATATATGGTCAGATAATGAAGTTTGGACATGAGTGTGATGTTTATGTTACTAGCTCAGTTATTAGCGTGTACTGTAAATTGAGAGCTGTGGAATTTGCTCGGAGAGTGTTTGATGAAAGTTTGGATAGGAATGTGGTGTGTTGGACTAGTCTTGTTAGTGGGTATTGTGGCAATGGGTTGGTTGATGATGCCCGTGACCTGTTCGATAAAATGCCTGAGAGAAATGATGTGTCTTACAGTGCAATGGTTTCGGGTTATGTTCAGAATGCTTGTTTCAACAAAGCTATTGATTTGTTTCGTGATTTCAAGCGTCGTCGTGCGAATGTGAGGTTGAAAGAGTCTCTTTTGGTTAGTGTTCTTAATGCCTGTGCTTCTGTGGGTGCATTCGAGGAACGGAAGTGGATTCAGATGTATTTGGATGACCATGGGCTTGAACTTTTTGCTGAAATGGAAAAGAAGGGACCTAAACCAAATGCTGTGACATTTGTTGGAGTTCTCACTGCATGTAATCACAAAACTCTGGTAAATGAAGCATGGCGAGTATTGGGACGTATGAGTAAAATTTATAGCATTGCTCCAGAGATTGAGCACTATGGGTGCATGGTTGATCTCTTGGCCCGTGCTGGGCGAGTGAAAGAGGCAGAGATATTGATAAGAAGTATGGCAATGGAACCAGACGGAGCTATATGGGGGTCTTTACTTAACGGGTGTCTGATACATGGCCATTTTGAGTTGGCCGGCAAGGTTGGGAAGCTTCTCATTCAATTAGAGCCTCAACATTGTGGAAGGTATGTTCTTTTAGCGAACATGTATGCCAAAATGGAAAACTGGGAGAATGTGTTGAGGCTAAGGAAAATGATGAAGGATAGAGAGGTAGTTTCAATTTCTGCTTGGAGTTTCATCGAGATTGTTGGTGTTGTGCATAAATTCTTAGCCAATGGTAAGTCTCATTCTCATTCAAGAAGTATATACCAAACATTAAGTCAACTGAGGAAGGAACTCGAAAGTTTTTCCAATGCCAATGATTCTTTGCTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2 PTEN_C2

Protein Analysis

366

Amino Acids

41.57

Weight (kDa)

8.44

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	62 - 91	1.8e-09	PPR repeat
PPR_2	PF13041	63 - 95	2.4e-07	PPR repeat family
PPR	PF01535	66 - 95	5e-08	PPR repeat
E_motif	PF20431	261 - 312	2.1e-09	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58160
fragaria_vesca	FvH4_1g01040 FvH4_1g01040 FvH4_1g01040 FvH4_1g01040
malus_domestica	MD15G1153000.v1.1
prunus_persica	Prupe.7G261700_v2.0.a1 Prupe.7G261700_v2.0.a1
pyrus_communis	pycom15g13760
rosa_chinensis	RchiOBHm_Chr2g0085801
rosa_laevigata	RLG00000015719 RLG00000024951
rosa_multiflora	Rmu_sc0009759.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155040
rosa_rugosa	Rorug01G0463100 Rorug01G0463200 Rorug01G0463300
rosa_samantha	Rh2AG012400 Rh2BG013100 Rh2CG013700 Rh2DG014800
rosa_wichuraiana	Rw2G001100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AcoI	YGGCCR	2 cut(s)	781, 795
AcsI	RAATTY	3 cut(s)	152, 621, 986
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	684
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	7 cut(s)	337, 367, 394, 494, 824, 942, 1020
AhlI	ACTAGT	1 cut(s)	206
AloI	GAACNNNNNNTCC	2 cut(s)	837, 869
AluBI	AGCT	6 cut(s)	31, 114, 146, 344, 743, 814
AluI	AGCT	6 cut(s)	31, 114, 146, 344, 743, 814
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	405, 1011
AoxI	GGCC	3 cut(s)	675, 781, 795
ApoI	RAATTY	3 cut(s)	152, 621, 986
ArsI	GACNNNNNNTTYG	2 cut(s)	1027, 1059
AspS9I	GGNCC	2 cut(s)	521, 676
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	783
BanI	GGYRCC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	651
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	405, 1011
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	111, 207
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	521, 676
BmiI	GGNNCC	3 cut(s)	45, 522, 732
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	898
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	908
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	1 cut(s)	684
Bse118I	RCCGGY	1 cut(s)	797
Bse1I	ACTGG	1 cut(s)	893
Bse3DI	GCAATG	4 cut(s)	238, 309, 630, 732
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	684
BseMI	GCAATG	4 cut(s)	238, 309, 630, 732
BseMII	CTCAG	3 cut(s)	129, 267, 1040
BseNI	ACTGG	1 cut(s)	893
BseYI	CCCAGC	1 cut(s)	683
BshFI	GGCC	3 cut(s)	677, 783, 797
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	2 cut(s)	534, 621
BslI	CCNNNNNNNGG	1 cut(s)	684
BsmAI	GTCTC	2 cut(s)	405, 1011
BsmFI	GGGAC	2 cut(s)	534, 621
BsmI	GAATGC	2 cut(s)	331, 443
BsnI	GGCC	3 cut(s)	677, 783, 797
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	2 cut(s)	55, 667
Bsp19I	CCATGG	1 cut(s)	484
BspANI	GGCC	3 cut(s)	677, 783, 797
BspCNI	CTCAG	3 cut(s)	128, 268, 1041
BspLI	GGNNCC	3 cut(s)	45, 522, 732
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	4 cut(s)	238, 309, 630, 732
BsrFI	RCCGGY	1 cut(s)	797
BsrI	ACTGG	1 cut(s)	893
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	55, 667
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	3 cut(s)	18, 134, 299
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	5 cut(s)	115, 276, 908, 991, 1049
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	2 cut(s)	58, 670
BstMAI	GTCTC	2 cut(s)	405, 1011
BstMBI	GATC	2 cut(s)	55, 667
BstNSI	RCATGY	2 cut(s)	567, 871
BsuRI	GGCC	3 cut(s)	677, 783, 797
BtgI	CCRYGG	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	304, 558
Cac8I	GCNNGC	1 cut(s)	799
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	2 cut(s)	521, 676
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	7 cut(s)	89, 485, 564, 594, 661, 779, 868
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	115, 276, 908, 991, 1049
DpnI	GATC	2 cut(s)	57, 669
DpnII	GATC	2 cut(s)	55, 667
EaeI	YGGCCR	2 cut(s)	781, 795
Eco130I	CCWWGG	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	7 cut(s)	92, 488, 567, 597, 664, 782, 871
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	2 cut(s)	534, 621
FatI	CATG	7 cut(s)	88, 484, 563, 593, 660, 778, 867
FbaI	TGATCA	1 cut(s)	55
FokI	GGATG	1 cut(s)	491
FspBI	CTAG	2 cut(s)	111, 207
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	3 cut(s)	677, 783, 797
HapII	CCGG	1 cut(s)	798
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	7 cut(s)	92, 488, 567, 597, 664, 782, 871
HincII	GTYRAC	1 cut(s)	1046
HindII	GTYRAC	1 cut(s)	1046
HindIII	AAGCTT	2 cut(s)	29, 812
HinfI	GANTC	3 cut(s)	398, 463, 1085
HpaII	CCGG	1 cut(s)	798
Hpy166II	GTNNAC	2 cut(s)	130, 1046
Hpy188I	TCNGA	6 cut(s)	60, 72, 162, 324, 468, 774
Hpy188III	TCNNGA	4 cut(s)	359, 638, 964, 1020
Hpy8I	GTNNAC	2 cut(s)	130, 1046
Hpy99I	CGWCG	2 cut(s)	375, 378
HpyAV	CCTTC	4 cut(s)	511, 840, 916, 1048
HpyCH4III	ACNGT	3 cut(s)	18, 134, 299
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	5 cut(s)	302, 443, 563, 660, 982
HpyF3I	CTNAG	5 cut(s)	115, 276, 908, 991, 1049
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	7 cut(s)	92, 488, 567, 597, 664, 782, 871
KroI	GCCGGC	1 cut(s)	797
KroNI	GCCGGC	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	55, 667
LmnI	GCTCC	3 cut(s)	9, 640, 740
LpnPI	CCDG	9 cut(s)	272, 288, 439, 566, 651, 669, 747, 811, 874
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	111, 207
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	3 cut(s)	106, 254, 538
MalI	GATC	2 cut(s)	57, 669
MboI	GATC	2 cut(s)	55, 667
MhlI	GDGCHC	1 cut(s)	651
MlsI	TGGCCA	1 cut(s)	783
MluCI	AATT	6 cut(s)	137, 152, 621, 824, 942, 986
MluNI	TGGCCA	1 cut(s)	783
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	3 cut(s)	31, 182, 529
MnlI	CCTC	7 cut(s)	381, 442, 691, 843, 897, 925, 1044
Mox20I	TGGCCA	1 cut(s)	783
MroNI	GCCGGC	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	783
MseI	TTAA	4 cut(s)	26, 420, 762, 1040
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	783
MspI	CCGG	1 cut(s)	798
Mva1269I	GAATGC	2 cut(s)	331, 443
NaeI	GCCGGC	1 cut(s)	799
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	2 cut(s)	55, 667
NgoMIV	GCCGGC	1 cut(s)	797
NlaIII	CATG	7 cut(s)	92, 488, 567, 597, 664, 782, 871
NlaIV	GGNNCC	3 cut(s)	45, 522, 732
NmuCI	GTSAC	2 cut(s)	254, 538
NspI	RCATGY	2 cut(s)	567, 871
PciI	ACATGT	1 cut(s)	867
PctI	GAATGC	2 cut(s)	331, 443
PdiI	GCCGGC	1 cut(s)	799
PfeI	GAWTC	2 cut(s)	463, 1085
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	521
PscI	ACATGT	1 cut(s)	867
Psp5II	RGGWCCY	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	45, 522, 732
PspPI	GGNCC	2 cut(s)	521, 676
PspPPI	RGGWCCY	1 cut(s)	521
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	26, 420, 762, 1040
Sau3AI	GATC	2 cut(s)	55, 667
Sau96I	GGNCC	2 cut(s)	521, 676
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	93
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	6 cut(s)	137, 152, 621, 824, 942, 986
SspMI	CTAG	2 cut(s)	111, 207
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	18, 134, 299
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	4 cut(s)	264, 447, 963, 1062
TasI	AATT	6 cut(s)	137, 152, 621, 824, 942, 986
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	463, 1085
Tru1I	TTAA	4 cut(s)	26, 420, 762, 1040
Tru9I	TTAA	4 cut(s)	26, 420, 762, 1040
TscAI	CASTG	2 cut(s)	304, 565
TseFI	GTSAC	2 cut(s)	254, 538
Tsp45I	GTSAC	2 cut(s)	254, 538
TspDTI	ATGAA	5 cut(s)	92, 189, 603, 935, 949
TspGWI	ACGGA	2 cut(s)	469, 753
TspRI	CASTG	2 cut(s)	304, 565
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	152, 621, 986
XceI	RCATGY	2 cut(s)	567, 871
XspI	CTAG	2 cut(s)	111, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.