Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010098

Physical Location & Seq

Genomic Coordinates Reverse (-)

56621813 .. 56623953

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0477000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTACTCTTTTTACTTCTTCTTCTTCTTTGTTTCAATCAATGGCTAGTCTACCATCTACCTTTTTGGCAAAGCCCCACATCTCCAAGCTTTCATCTGACTCGTCTAATTTCTTGAACCCATGTAAGAATTTGAGACCCATTTCGATTGCGATCAGACCCAGAAACAAGGATTATGGTGTAAAGATGTCATGGGATGGTCCACTTTCTTCGGTCAAGTTGATCATACAGGGAAAGCATTTGGAGTTGACAGAACCAATCAAGAAGCATGTGGAAGACAAAGTTGGAAAGGCAATCTCAAAGCACAGTCACCTGGTGAGGGAAGCTGATATTCGGTTGTCTGTTCGAGGTGGAGACCTTGGAAAAGGCCCAAAGATCAGGAGATGTGAGGTCACTTTGTTCACAAAGAAGCATGGAGTGTTCAGGGCCGAGGAAGAAGGGGAGACGCTTATTGCTAGCATAGATCTGGCAGCTTCTATCATCCAGAGGAAGTTGAGGAAAATCAAGGAGAAGGTATCAGATCATGGCCGTCACATGAAAGGCTTTAACAGATTGAAAGTCAGGGAGGCTCAAATACCTGTGGAAGTGGAAGAAGAAGATCCCCAGGAGGAGGAGGAAGACTTATTGGATGAGGTTGTCCGTACAAAATACTTCGACATGCCACCTTTGACAGTCGCTGAAGCAGTGGATCAACTGGAAAACCTTGATCATGACTTCTATGCTTTCAGAAATGAAGAAACTGGTGAGATTAACATCCTATACAGAAGAAAAACAGGAGGCTATGGGGTTATTATACCCAAAGGAAGTGGGAAAGCTGATAAAGTGGAGAATGGGGTGGTAGAACGAGCTAGAGAATCTTCCATGGCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

TPR_8

Protein Analysis

290

Amino Acids

32.6

Weight (kDa)

8.36

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30AE	PF02482	75 - 172	5.8e-19	Sigma 54 modulation protein / S30EA ribosomal protein
Ribosom_S30AE_C	PF16321	210 - 263	1.1e-24	Sigma 54 modulation/S30EA ribosomal protein C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35430
fragaria_vesca	FvH4_1g02580 FvH4_1g02580
malus_domestica	MD02G1023300.v1.1 MD15G1166400.v1.1
prunus_persica	Prupe.7G248800_v2.0.a1 Prupe.7G248800_v2.0.a1 Prupe.7G248800_v2.0.a1
pyrus_communis	pycom02g02030 pycom15g14870
rosa_chinensis	RchiOBHm_Chr2g0087611
rosa_laevigata	RLG00000015886
rosa_multiflora	Rmu_sc0002299.1_g000034
rosa_roxburghii	Rroxscaffold_2G00153370
rosa_rugosa	Rorug01G0477000 Rorug01G0477100
rosa_samantha	Rh2AG030700 Rh2BG030400 Rh2CG030800 Rh2DG030700
rosa_wichuraiana	Rw2G002430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	593, 696
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	699
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	1 cut(s)	643
AfiI	CCNNNNNNNGG	2 cut(s)	319, 610
AgsI	TTSAA	3 cut(s)	38, 118, 556
AjnI	CCWGG	2 cut(s)	312, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	5 cut(s)	91, 326, 473, 815, 848
AluI	AGCT	5 cut(s)	91, 326, 473, 815, 848
Alw26I	GTCTC	3 cut(s)	130, 348, 437
AlwI	GGATC	2 cut(s)	593, 696
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	3 cut(s)	367, 426, 526
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	200, 368, 426
AsuHPI	GGTGA	3 cut(s)	302, 328, 755
AsuNHI	GCTAGC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	200
BbsI	GAAGAC	2 cut(s)	282, 624
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	2 cut(s)	64, 191
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	2 cut(s)	314, 605
BclI	TGATCA	2 cut(s)	222, 706
BcoDI	GTCTC	3 cut(s)	130, 348, 437
BfaI	CTAG	3 cut(s)	48, 456, 849
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	314, 605
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	200, 368, 426
BmrFI	CCNGG	2 cut(s)	314, 605
BmtI	GCTAGC	1 cut(s)	459
BpiI	GAAGAC	2 cut(s)	282, 624
BsaBI	GATNNNNATC	2 cut(s)	152, 752
BsaI	GGTCTC	2 cut(s)	130, 348
BsaJI	CCNNGG	4 cut(s)	358, 429, 603, 861
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 610
Bse1I	ACTGG	2 cut(s)	699, 745
Bse8I	GATNNNNATC	2 cut(s)	152, 752
BseBI	CCWGG	2 cut(s)	314, 605
BseDI	CCNNGG	4 cut(s)	358, 429, 603, 861
BseGI	GGATG	4 cut(s)	202, 480, 634, 753
BseJI	GATNNNNATC	2 cut(s)	152, 752
BseLI	CCNNNNNNNGG	2 cut(s)	319, 610
BseNI	ACTGG	2 cut(s)	699, 745
BseRI	GAGGAG	2 cut(s)	623, 626
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	3 cut(s)	369, 428, 528
BslI	CCNNNNNNNGG	2 cut(s)	319, 610
BsmAI	GTCTC	3 cut(s)	130, 348, 437
BsmBI	CGTCTC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	369, 428, 528
Bso31I	GGTCTC	2 cut(s)	130, 348
Bsp143I	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
Bsp19I	CCATGG	1 cut(s)	861
BspANI	GGCC	3 cut(s)	369, 428, 528
BspHI	TCATGA	1 cut(s)	709
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	593, 696
BspTNI	GGTCTC	2 cut(s)	130, 348
BsrI	ACTGG	2 cut(s)	699, 745
BssECI	CCNNGG	4 cut(s)	358, 429, 603, 861
BssMI	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
BssT1I	CCWWGG	2 cut(s)	358, 861
Bst2UI	CCWGG	2 cut(s)	314, 605
Bst4CI	ACNGT	2 cut(s)	308, 673
BstC8I	GCNNGC	1 cut(s)	457
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	4 cut(s)	202, 480, 634, 753
BstKTI	GATC	8 cut(s)	156, 225, 378, 466, 523, 601, 691, 709
BstMAI	GTCTC	3 cut(s)	130, 348, 437
BstMBI	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
BstNI	CCWGG	2 cut(s)	314, 605
BstNSI	RCATGY	2 cut(s)	272, 661
BstSCI	CCNGG	2 cut(s)	312, 603
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	2 cut(s)	282, 624
BstX2I	RGATCY	2 cut(s)	463, 598
BstYI	RGATCY	2 cut(s)	463, 598
BsuRI	GGCC	3 cut(s)	369, 428, 528
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	4 cut(s)	202, 480, 634, 753
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	457
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	1 cut(s)	709
Cfr13I	GGNCC	3 cut(s)	200, 368, 426
CseI	GACGC	1 cut(s)	454
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	642
CspCI	CAANNNNNGTGG	2 cut(s)	787, 822
CviAII	CATG	9 cut(s)	123, 192, 269, 413, 524, 535, 658, 710, 862
CviQI	GTAC	1 cut(s)	642
DpnI	GATC	8 cut(s)	155, 224, 377, 465, 522, 600, 690, 708
DpnII	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
DraIII	CACNNNGTG	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	358, 861
Eco31I	GGTCTC	2 cut(s)	130, 348
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	312, 603
EcoT14I	CCWWGG	2 cut(s)	358, 861
ErhI	CCWWGG	2 cut(s)	358, 861
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	9 cut(s)	126, 195, 272, 416, 527, 538, 661, 713, 865
FatI	CATG	9 cut(s)	122, 191, 268, 412, 523, 534, 657, 709, 861
FbaI	TGATCA	2 cut(s)	222, 706
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	4 cut(s)	209, 467, 641, 740
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	3 cut(s)	48, 456, 849
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	3 cut(s)	369, 428, 528
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	9 cut(s)	126, 195, 272, 416, 527, 538, 661, 713, 865
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	101, 854
HphI	GGTGA	3 cut(s)	302, 328, 755
Hpy166II	GTNNAC	4 cut(s)	53, 203, 249, 402
Hpy188I	TCNGA	4 cut(s)	100, 158, 520, 728
Hpy188III	TCNNGA	5 cut(s)	115, 262, 379, 484, 710
Hpy8I	GTNNAC	4 cut(s)	53, 203, 249, 402
HpyAV	CCTTC	2 cut(s)	431, 505
HpyCH4III	ACNGT	2 cut(s)	308, 673
Hsp92II	CATG	9 cut(s)	126, 195, 272, 416, 527, 538, 661, 713, 865
Ksp22I	TGATCA	2 cut(s)	222, 706
Kzo9I	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
Lsp1109I	GCAGC	1 cut(s)	482
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	3 cut(s)	48, 456, 849
MaeIII	GTNAC	3 cut(s)	308, 391, 530
MalI	GATC	8 cut(s)	155, 224, 377, 465, 522, 600, 690, 708
MboI	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
MflI	RGATCY	2 cut(s)	463, 598
MluCI	AATT	2 cut(s)	109, 130
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	265
MseI	TTAA	2 cut(s)	546, 750
MspR9I	CCNGG	2 cut(s)	314, 605
MvaI	CCWGG	2 cut(s)	314, 605
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	9 cut(s)	126, 195, 272, 416, 527, 538, 661, 713, 865
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	308, 391, 530
NspI	RCATGY	2 cut(s)	272, 661
PagI	TCATGA	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	854
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	312, 603
PspGI	CCWGG	2 cut(s)	312, 603
PspPI	GGNCC	3 cut(s)	200, 368, 426
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	463, 598
RsaI	GTAC	1 cut(s)	643
RsaNI	GTAC	1 cut(s)	642
SaqAI	TTAA	2 cut(s)	546, 750
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	8 cut(s)	153, 222, 375, 463, 520, 598, 688, 706
Sau96I	GGNCC	3 cut(s)	200, 368, 426
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	314, 605
SexAI	ACCWGGT	1 cut(s)	312
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	109, 130
SspMI	CTAG	3 cut(s)	48, 456, 849
StyD4I	CCNGG	2 cut(s)	312, 603
StyI	CCWWGG	2 cut(s)	358, 861
TaaI	ACNGT	2 cut(s)	308, 673
TaqI	TCGA	3 cut(s)	146, 346, 654
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	109, 130
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	2 cut(s)	546, 750
Tru9I	TTAA	2 cut(s)	546, 750
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	3 cut(s)	308, 391, 530
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	3 cut(s)	308, 391, 530
TspDTI	ATGAA	3 cut(s)	84, 551, 747
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	690
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	2 cut(s)	272, 661
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	3 cut(s)	48, 456, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.