Rorug02G0080300
ERF Family

Zn-finger in Ran binding protein and others

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005885
Physical Location & Seq
Reverse (-)
6489612 .. 6491863
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0080300.1

Sequence Viewer

Length: 489 bp
ATGGTGGTGAGGCTCCGATTAGCGAGGTTCGGATGCAAGAACCGGCCGTTCTATCGGGTCATGGCGGCCGATAGCCGATCTCCCAGAGACGGCAAGCACCTTGAAGTTTTGGGCTATTACAATCCCTTGCCAGGCCAAGATGGGGGTAAACGAATGGGTCTGAACTTTGATAGAGTGAAGTATTGGCTATCTGTTGGAGCTCAGCCTTCAGATCCTGTGCAGTGCCTTCTTTTCAGGGCAGGATTATTACCTCCAACACCAATGATGGCAATGGCACGTAAGGGTGGGCCACGTGACACACGGCCTGTAGATCCTATGAGTGGGCGGATCCTGACTCCTGAGAAGCCAGCCAGTGCTGATGAAGCCAAAGATGCTGAAAACGCTGAAGAAAAAGAAGCTGAAAGTGCTGAAGTTAATGATGGGAGGTTGCAAGAAACGATCTTCCATATCGGCTTGCAGGACAAGCAGCATGGTATTGGTCAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005642 GO:0005643 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006464 GO:0006508 GO:0006511 GO:0006606 GO:0006607 GO:0006611 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007088 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008536 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0010564 GO:0010638 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016740 GO:0016925 GO:0017016 GO:0017038 GO:0018193 GO:0018205 GO:0019538 GO:0019787 GO:0019789 GO:0019899 GO:0019941 GO:0022402 GO:0030163 GO:0031090 GO:0031267 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0042175 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044614 GO:0044615 GO:0044770 GO:0044772 GO:0044843 GO:0045184 GO:0045787 GO:0045840 GO:0045931 GO:0046602 GO:0046604 GO:0046605 GO:0046607 GO:0046907 GO:0048518 GO:0048522 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051020 GO:0051028 GO:0051128 GO:0051130 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051493 GO:0051495 GO:0051603 GO:0051640 GO:0051641 GO:0051642 GO:0051649 GO:0051704 GO:0051726 GO:0051783 GO:0051785 GO:0061842 GO:0065007 GO:0070507 GO:0070647 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0090068 GO:0098589 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

8.95

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S16 PF00886 9 - 70 7e-28 Ribosomal protein S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 65, 325
AclWI GGATC 4 cut(s) 206, 305, 322, 335
AcoI YGGCCR 2 cut(s) 44, 66
AcuI CTGAAG 3 cut(s) 192, 405, 429
AcvI CACGTG 1 cut(s) 293
AfiI CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 200, 398
AluI AGCT 2 cut(s) 200, 398
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 4 cut(s) 206, 305, 322, 335
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 5 cut(s) 44, 66, 133, 287, 302
ApeKI GCWGC 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 19
BamHI GGATCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 202
BbrPI CACGTG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 134, 259, 413
BceAI ACGGC 3 cut(s) 31, 106, 317
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 66, 467
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 2 cut(s) 67, 468
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 14, 329
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 23, 361
Bpu1102I GCTNAGC 1 cut(s) 201
BsaAI YACGTR 2 cut(s) 278, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 215, 330
BseNI ACTGG 1 cut(s) 351
BseX3I CGGCCG 2 cut(s) 44, 66
BseXI GCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 239
Bsh1285I CGRYCG 2 cut(s) 47, 69
BshFI GGCC 5 cut(s) 46, 68, 135, 289, 304
BsiEI CGRYCG 2 cut(s) 47, 69
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 89, 131, 142, 320
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 5 cut(s) 46, 68, 135, 289, 304
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 5 cut(s) 77, 211, 310, 327, 438
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 2 cut(s) 65, 325
BspANI GGCC 5 cut(s) 46, 68, 135, 289, 304
BspCNI CTCAG 2 cut(s) 214, 331
BspLI GGNNCC 2 cut(s) 14, 329
BspPI GGATC 4 cut(s) 206, 305, 322, 335
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 5 cut(s) 77, 211, 310, 327, 438
Bst2UI CCWGG 1 cut(s) 132
BstBAI YACGTR 2 cut(s) 278, 293
BstC8I GCNNGC 3 cut(s) 95, 348, 455
BstDEI CTNAG 2 cut(s) 201, 339
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 5 cut(s) 80, 214, 313, 330, 441
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 77, 211, 310, 327, 438
BstMCI CGRYCG 2 cut(s) 47, 69
BstMWI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 404, 463
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 3 cut(s) 211, 310, 327
BstYI RGATCY 3 cut(s) 211, 310, 327
BstZI CGGCCG 2 cut(s) 44, 66
BsuRI GGCC 5 cut(s) 46, 68, 135, 289, 304
BtsCI GGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 358
Cac8I GCNNGC 3 cut(s) 95, 348, 455
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 287
CviAII CATG 2 cut(s) 61, 470
DdeI CTNAG 2 cut(s) 201, 339
DpnI GATC 5 cut(s) 79, 213, 312, 329, 440
DpnII GATC 5 cut(s) 77, 211, 310, 327, 438
EaeI YGGCCR 2 cut(s) 44, 66
EagI CGGCCG 2 cut(s) 44, 66
EciI GGCGGA 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 200
EclXI CGGCCG 2 cut(s) 44, 66
Eco24I GRGCYC 1 cut(s) 202
Eco52I CGGCCG 2 cut(s) 44, 66
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 3 cut(s) 192, 405, 429
Eco72I CACGTG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 2 cut(s) 64, 473
FaiI YATR 5 cut(s) 62, 317, 447, 471, 487
FatI CATG 2 cut(s) 60, 469
Fnu4HI GCNGC 2 cut(s) 66, 467
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 66, 467
GluI GCNGC 2 cut(s) 66, 467
HaeIII GGCC 5 cut(s) 46, 68, 135, 289, 304
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 64, 473
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 4 cut(s) 17, 32, 162, 211
Hpy188III TCNNGA 2 cut(s) 331, 338
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 216, 236
HpyCH4IV ACGT 2 cut(s) 277, 292
HpyCH4V TGCA 4 cut(s) 36, 220, 430, 457
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 404, 463
HpyF3I CTNAG 2 cut(s) 201, 339
HpySE526I ACGT 2 cut(s) 277, 292
Hsp92II CATG 2 cut(s) 64, 473
Kzo9I GATC 5 cut(s) 77, 211, 310, 327, 438
LmnI GCTCC 2 cut(s) 18, 197
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 23, 361
MaeII ACGT 2 cut(s) 277, 292
MaeIII GTNAC 1 cut(s) 293
MalI GATC 5 cut(s) 79, 213, 312, 329, 440
MboI GATC 5 cut(s) 77, 211, 310, 327, 438
MboII GAAGA 2 cut(s) 398, 433
MflI RGATCY 3 cut(s) 211, 310, 327
MhlI GDGCHC 1 cut(s) 202
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 2 cut(s) 175, 278
MnlI CCTC 4 cut(s) 3, 18, 261, 417
MseI TTAA 1 cut(s) 414
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 362, 371, 380, 404, 463
NdeII GATC 5 cut(s) 77, 211, 310, 327, 438
NlaIII CATG 2 cut(s) 64, 473
NlaIV GGNNCC 2 cut(s) 14, 329
NmuCI GTSAC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 67, 468
PleI GAGTC 1 cut(s) 328
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
PpsI GAGTC 1 cut(s) 328
Ppu21I YACGTR 2 cut(s) 278, 293
Psp124BI GAGCTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 130
PspCI CACGTG 1 cut(s) 293
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 14, 329
PspPI GGNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 3 cut(s) 211, 310, 327
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 66, 467
Sau3AI GATC 5 cut(s) 77, 211, 310, 327, 438
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 202
SetI ASST 8 cut(s) 29, 102, 202, 253, 280, 295, 400, 428
SfaNI GCATC 2 cut(s) 23, 361
SfcI CTRYAG 1 cut(s) 306
SsiI CCGC 2 cut(s) 65, 325
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 130
TaiI ACGT 2 cut(s) 280, 295
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 227, 358
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 2 cut(s) 227, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.