Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013203

Physical Location & Seq

Genomic Coordinates Forward (+)

11953989 .. 11955008

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTTCGATGAAATGCCAAAGAGAGATGAGGTTTCATGGACCAATATGATTTCAGGCTATGTTGGAGTCTCTGATTCCTCTGCAGCATTGGCTCTGTTCTCAAACATGTGGGTGCAGCCAGGTCTCTGCATGGACCCTTTTCTTCTCAGCATTGCGCTCAAGGCTTGTGGACTTGGAAGGAACTTGTGTTATGGGGAAGTTGTACATGGGTACTCGGTTAAATCGGGTTTTGTGAACTCATTCTTTGTGGGTAGTGCTCTTCTTGACATGTATATGAAGGTTGGTGAGATTGAGAAGGGTTGTAGAGTTTTCGACGCAATGCCGCTGAGAAATGTGGTGTCTTGGACTACCATTATCACTGGTCTCGTTTGCGCCGGTTATAATGTGGAGGGGTTGGGGTATTTTGCTGAAATGTGGAGCTGCAGGGTGCAATGTGATGTGTATGTGTTTGCTATCTCGTTGAAGGCGTGTGCTGATTTGGGTGCTTTGAAGTGTGGGAGAGAAATTCACACGCAAACGATGAAGAAAGGGTTTGATGAGAACTCTTTCGTACCCAATTCTCTTGCTACCATGTACAATAAATGTGGAAAATTGGACTATGGGGTGCAGTTGTTCGCGAACATGAGGACACAGGATGTTGTTTCGTGGACATCAATCATTACATTGCATTTTTGGACGGGTCAAGAGGGCCATGCAATCAAAGCATTTATGCGAATGCAGGAATCTGGTGTGTATCCTAATGAGTACACTTTTGCAGCTGTTATCTCTGGATGTGCCAATCTTGCTAGAGTTGAATGGGGTGAACAATTGCATGCCAACGTGTTACGCTTGGGTCTTGCAGATTCTTTGTCAGTGGGAAATTCAATTATAACCATGTATGCCAAATGTGGGCGTTTGGCTTCAGCTTCTGTTGTGTTTCATGAGATGGGCAGAAAAGATCTTGTTTCATGGACCACAGTAATTGCACGGTATTCTCAAGCAGGTTATGGGAAGAAGCTTTCAAGTGTTTGTTGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

339

Amino Acids

37.26

Weight (kDa)

7.46

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	212 - 260	1.3e-10	PPR repeat family
PPR_3	PF13812	212 - 258	2.9e-06	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67250
fragaria_vesca	FvH4_1g16660
malus_domestica	MD02G1178100.v1.1 MD15G1288000.v1.1
prunus_persica	Prupe.6G229800_v2.0.a1
pyrus_communis	pycom02g14380 pycom02g14420 pycom15g25150
rosa_chinensis	RchiOBHm_Chr2g0106581
rosa_laevigata	RLG00000017518
rosa_multiflora	Rmu_ssc0000135.1_g000051
rosa_roxburghii	Rroxscaffold_2G00137000
rosa_rugosa	Rorug02G0136500
rosa_samantha	Rh2AG187700 Rh2BG198700 Rh2CG192700 Rh2DG193900
rosa_wichuraiana	Rw2G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 869
Acc36I	ACCTGC	1 cut(s)	971
AccII	CGCG	1 cut(s)	617
AciI	CCGC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	504, 859
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	5 cut(s)	204, 212, 552, 575, 746
AfiI	CCNNNNNNNGG	1 cut(s)	888
AflIII	ACRYGT	3 cut(s)	105, 267, 819
AgsI	TTSAA	5 cut(s)	463, 490, 794, 864, 1002
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	420, 758, 905, 997
AluI	AGCT	4 cut(s)	420, 758, 905, 997
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	3 cut(s)	73, 128, 368
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	4 cut(s)	83, 115, 420, 755
ApoI	RAATTY	2 cut(s)	504, 859
Asp700I	GAANNNNTTC	2 cut(s)	239, 545
AspLEI	GCGC	2 cut(s)	157, 374
AspS9I	GGNCC	4 cut(s)	39, 133, 688, 951
AsuHPI	GGTGA	2 cut(s)	296, 812
AvaII	GGWCC	3 cut(s)	39, 133, 951
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	4 cut(s)	95, 127, 407, 767
BccI	CCATC	1 cut(s)	919
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	1 cut(s)	744
BcoDI	GTCTC	3 cut(s)	73, 128, 368
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	2 cut(s)	81, 421
BfuAI	ACCTGC	1 cut(s)	971
BfuI	GTATCC	1 cut(s)	744
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	5 cut(s)	84, 116, 323, 421, 756
BlsI	GCNGC	5 cut(s)	85, 117, 324, 422, 757
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	3 cut(s)	39, 133, 951
BmgT120I	GGNCC	4 cut(s)	39, 133, 688, 951
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	143, 960
BsaI	GGTCTC	2 cut(s)	128, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	888
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	4 cut(s)	150, 324, 437, 662
BseBI	CCWGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	640, 776
BseLI	CCNNNNNNNGG	1 cut(s)	888
BseMI	GCAATG	4 cut(s)	150, 324, 437, 662
BseMII	CTCAG	2 cut(s)	160, 317
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	4 cut(s)	95, 127, 407, 767
BsgI	GTGCAG	2 cut(s)	134, 626
Bsh1236I	CGCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	888
BsmAI	GTCTC	3 cut(s)	73, 128, 368
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	690
Bso31I	GGTCTC	2 cut(s)	128, 368
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp1407I	TGTACA	2 cut(s)	202, 573
Bsp143I	GATC	1 cut(s)	937
Bsp68I	TCGCGA	1 cut(s)	617
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	2 cut(s)	159, 318
BspFNI	CGCG	1 cut(s)	617
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	2 cut(s)	85, 425
BspMI	ACCTGC	1 cut(s)	971
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	2 cut(s)	128, 368
BsrDI	GCAATG	4 cut(s)	150, 324, 437, 662
BsrFI	RCCGGY	1 cut(s)	374
BsrGI	TGTACA	2 cut(s)	202, 573
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	374
BssMI	GATC	1 cut(s)	937
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	958, 969
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	2 cut(s)	202, 573
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	2 cut(s)	146, 326
BstF5I	GGATG	2 cut(s)	640, 776
BstFNI	CGCG	1 cut(s)	617
BstHHI	GCGC	2 cut(s)	157, 374
BstKTI	GATC	1 cut(s)	940
BstMAI	GTCTC	3 cut(s)	73, 128, 368
BstMBI	GATC	1 cut(s)	937
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 161, 701, 782
BstNI	CCWGG	1 cut(s)	120
BstNSI	RCATGY	3 cut(s)	109, 271, 815
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	2 cut(s)	81, 421
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	4 cut(s)	95, 127, 407, 767
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuI	GTATCC	1 cut(s)	744
BsuRI	GGCC	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	640, 776
BtsIMutI	CAGTG	2 cut(s)	357, 858
BtuMI	TCGCGA	1 cut(s)	617
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	1 cut(s)	813
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	1 cut(s)	919
CfoI	GCGC	2 cut(s)	157, 374
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	39, 133, 688, 951
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	5 cut(s)	203, 211, 551, 574, 745
CspCI	CAANNNNNGTGG	6 cut(s)	148, 183, 565, 600, 943, 978
CviQI	GTAC	5 cut(s)	203, 211, 551, 574, 745
DdeI	CTNAG	2 cut(s)	146, 326
DpnI	GATC	1 cut(s)	939
DpnII	GATC	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco31I	GGTCTC	2 cut(s)	128, 368
Eco47I	GGWCC	3 cut(s)	39, 133, 951
Eco57I	CTGAAG	1 cut(s)	885
EcoRII	CCWGG	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	84, 116, 323, 421, 756
FokI	GGATG	2 cut(s)	647, 783
Fsp4HI	GCNGC	5 cut(s)	84, 116, 323, 421, 756
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	2 cut(s)	156, 373
GluI	GCNGC	5 cut(s)	84, 116, 323, 421, 756
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	157, 374
Hin6I	GCGC	2 cut(s)	155, 372
HinP1I	GCGC	2 cut(s)	155, 372
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	4 cut(s)	66, 74, 722, 842
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	2 cut(s)	296, 812
Hpy166II	GTNNAC	5 cut(s)	170, 235, 648, 747, 803
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	5 cut(s)	263, 616, 683, 768, 920
Hpy8I	GTNNAC	5 cut(s)	170, 235, 648, 747, 803
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	4 cut(s)	171, 271, 289, 457
HpyCH4III	ACNGT	2 cut(s)	958, 969
HpyCH4IV	ACGT	1 cut(s)	819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 161, 701, 782
HpyF3I	CTNAG	2 cut(s)	146, 326
HpySE526I	ACGT	1 cut(s)	819
HspAI	GCGC	2 cut(s)	155, 372
Kzo9I	GATC	1 cut(s)	937
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	1 cut(s)	417
Lsp1109I	GCAGC	4 cut(s)	95, 127, 407, 767
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	822
MalI	GATC	1 cut(s)	939
MboI	GATC	1 cut(s)	937
MboII	GAAGA	4 cut(s)	134, 251, 535, 1003
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	7 cut(s)	504, 556, 590, 806, 859, 864, 960
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	22, 88, 382, 618, 679
MroXI	GAANNNNTTC	2 cut(s)	239, 545
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	2 cut(s)	110, 272
MspA1I	CMGCKG	2 cut(s)	325, 758
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	806
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	617
MwoI	GCNNNNNNNGC	4 cut(s)	89, 161, 701, 782
NdeII	GATC	1 cut(s)	937
NlaIV	GGNNCC	1 cut(s)	135
NruI	TCGCGA	1 cut(s)	617
NspI	RCATGY	3 cut(s)	109, 271, 815
PaeI	GCATGC	1 cut(s)	815
PagI	TCATGA	1 cut(s)	919
PciI	ACATGT	2 cut(s)	105, 267
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PctI	GAATGC	1 cut(s)	720
PdmI	GAANNNNTTC	2 cut(s)	239, 545
PfeI	GAWTC	3 cut(s)	74, 722, 842
PkrI	GCNGC	5 cut(s)	85, 117, 324, 422, 757
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PscI	ACATGT	2 cut(s)	105, 267
PsiI	TTATAA	2 cut(s)	381, 869
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	4 cut(s)	39, 133, 688, 951
PstI	CTGCAG	2 cut(s)	85, 425
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	758
RruI	TCGCGA	1 cut(s)	617
RsaI	GTAC	5 cut(s)	204, 212, 552, 575, 746
RsaNI	GTAC	5 cut(s)	203, 211, 551, 574, 745
RseI	CAYNNNNRTG	2 cut(s)	110, 272
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	5 cut(s)	84, 116, 323, 421, 756
Sau3AI	GATC	1 cut(s)	937
Sau96I	GGNCC	4 cut(s)	39, 133, 688, 951
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	9 cut(s)	33, 124, 282, 422, 760, 822, 907, 985, 999
SfcI	CTRYAG	2 cut(s)	81, 421
SinI	GGWCC	3 cut(s)	39, 133, 951
SmiMI	CAYNNNNRTG	2 cut(s)	110, 272
SmlI	CTYRAG	2 cut(s)	158, 975
SmoI	CTYRAG	2 cut(s)	158, 975
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	7 cut(s)	504, 556, 590, 806, 859, 864, 960
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	958, 969
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	2 cut(s)	6, 312
TasI	AATT	7 cut(s)	504, 556, 590, 806, 859, 864, 960
TatI	WGTACW	3 cut(s)	202, 573, 744
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	3 cut(s)	74, 722, 842
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	364, 858
TseI	GCWGC	4 cut(s)	83, 115, 420, 755
TspDTI	ATGAA	6 cut(s)	24, 24, 290, 536, 908, 936
TspRI	CASTG	2 cut(s)	364, 858
VpaK11BI	GGWCC	3 cut(s)	39, 133, 951
XapI	RAATTY	2 cut(s)	504, 859
XceI	RCATGY	3 cut(s)	109, 271, 815
XmnI	GAANNNNTTC	2 cut(s)	239, 545
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.