Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007954

Physical Location & Seq

Genomic Coordinates Reverse (-)

15396583 .. 15398699

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCGCAGCATGGCAAGCTCTGGTTCCAGTCGGGGCATCGCGGCCATTGTGGGCGTTGGACCGAATCTAGGCCGGTCCATCGCTCGGAAGTTCGCCCATGAAGGCTACACGGTGGCCATCCTTGCCCGTGATCTTGACAGACTGTCGAAATTTGCCGATGAGATTGCAAGGGAGGAGAAATCTCAAGTGTTTGCCATAAGAATCGACTGCTCCGAGTCTCGGAGCGTGAGGGAGGCCTTTGAGGGTGTTCTTTCCCTTGGTTTTGTGGAGGTGCTGGTCTACAATGCTTACCAGCCGGTTTCTTGGAAACCCACAAAGTTCACCGACATTCGGATCGACTCCTTGGAGAAGTCCCTAGCCGTCTCTTCTGTCGGAGCCTTTCACTGTGCTCAACAGGTTCTTCCTGGTATGGTTGAAAGGGGAAGGGGTACGATTTTGTTCACCGGATGCTCAGCTTCACTTAAAGGCATTGCTGGCTACTCTGAACTATGCTGTGGGAAATTTGCACTGAGAGCTCTATCACAATGTTTGTCCATGGAGTTCCAACCTTACGGTGTACACATTGCGCATGTTATTGTTGACGGGGTCATGGGACCGCCTAGGGGTGGCTCATCATCGAGTTCACAGAGAATTGCCGGAGTAGGAGTCAGCGATGGATCAATGGACCCCGACGCGGTGGCTCAAACCTATTGGCACTTGCACATTCAAGACCGGAGTGCTTGGACCCAAGAAATCGACCTCCGTCCTTCAATCCCTCCCAGATTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

256

Amino Acids

27.66

Weight (kDa)

8.17

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	13 - 192	7.3e-30	short chain dehydrogenase
adh_short_C2	PF13561	22 - 192	9.4e-21	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65500 AT5G65500
fragaria_vesca	FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550
malus_domestica	MD15G1311300.v1.1
prunus_persica	Prupe.6G202700_v2.0.a1 Prupe.6G202700_v2.0.a1
pyrus_communis	pycom15g27510
rosa_chinensis	RchiOBHm_Chr2g0111061
rosa_laevigata	RLG00000017862
rosa_multiflora	Rmu_sc0003994.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132720
rosa_rugosa	Rorug02G0170800
rosa_samantha	Rh2AG223300 Rh2BG235200 Rh2CG226700 Rh2DG231000
rosa_wichuraiana	Rw2G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	5, 567
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	41, 674
AciI	CCGC	3 cut(s)	41, 596, 674
AclWI	GGATC	2 cut(s)	341, 664
AcoI	YGGCCR	2 cut(s)	42, 114
AcsI	RAATTY	2 cut(s)	149, 500
AfaI	GTAC	2 cut(s)	430, 558
AfiI	CCNNNNNNNGG	7 cut(s)	68, 84, 219, 330, 602, 605, 673
AgsI	TTSAA	3 cut(s)	416, 707, 750
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	3 cut(s)	18, 455, 515
AluI	AGCT	3 cut(s)	18, 455, 515
Alw21I	GWGCWC	2 cut(s)	391, 517
Alw26I	GTCTC	2 cut(s)	222, 367
AlwI	GGATC	2 cut(s)	341, 664
AoxI	GGCC	4 cut(s)	42, 70, 114, 234
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	149, 500
AspA2I	CCTAGG	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	6, 568
AspS9I	GGNCC	5 cut(s)	59, 75, 593, 664, 723
AsuHPI	GGTGA	2 cut(s)	313, 433
AvaII	GGWCC	5 cut(s)	59, 75, 593, 664, 723
AvrII	CCTAGG	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	391, 517
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	3 cut(s)	86, 125, 647
BceAI	ACGGC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	2 cut(s)	222, 367
BfaI	CTAG	4 cut(s)	68, 356, 600, 769
BisI	GCNGC	2 cut(s)	7, 42
BlnI	CCTAGG	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	451
BlsI	GCNGC	2 cut(s)	8, 43
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	5 cut(s)	59, 75, 593, 664, 723
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	5 cut(s)	59, 75, 593, 664, 723
BmiI	GGNNCC	5 cut(s)	25, 376, 594, 666, 725
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	45, 437
BoxI	GACNNNNGTC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	1 cut(s)	168
BsaJI	CCNNGG	4 cut(s)	256, 342, 534, 599
BsaWI	WCCGGW	2 cut(s)	443, 711
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	7 cut(s)	68, 84, 219, 330, 602, 605, 673
Bse118I	RCCGGY	2 cut(s)	72, 295
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	2 cut(s)	468, 561
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	4 cut(s)	256, 342, 534, 599
BseGI	GGATG	2 cut(s)	117, 452
BseLI	CCNNNNNNNGG	7 cut(s)	68, 84, 219, 330, 602, 605, 673
BseMI	GCAATG	2 cut(s)	468, 561
BseMII	CTCAG	2 cut(s)	465, 500
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	41, 674
BshFI	GGCC	4 cut(s)	44, 72, 116, 236
BsiHKAI	GWGCWC	2 cut(s)	391, 517
BsiSI	CCGG	5 cut(s)	73, 296, 444, 636, 712
BslFI	GGGAC	2 cut(s)	337, 606
BslI	CCNNNNNNNGG	7 cut(s)	68, 84, 219, 330, 602, 605, 673
BsmAI	GTCTC	2 cut(s)	222, 367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	2 cut(s)	337, 606
BsnI	GGCC	4 cut(s)	44, 72, 116, 236
Bsp1286I	GDGCHC	2 cut(s)	391, 517
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	3 cut(s)	130, 333, 656
Bsp1720I	GCTNAGC	1 cut(s)	451
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	3 cut(s)	41, 596, 674
BspANI	GGCC	4 cut(s)	44, 72, 116, 236
BspCNI	CTCAG	2 cut(s)	464, 501
BspFNI	CGCG	2 cut(s)	41, 674
BspLI	GGNNCC	5 cut(s)	25, 376, 594, 666, 725
BspPI	GGATC	2 cut(s)	341, 664
BsrDI	GCAATG	2 cut(s)	468, 561
BsrFI	RCCGGY	2 cut(s)	72, 295
BsrGI	TGTACA	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	2 cut(s)	72, 295
BssECI	CCNNGG	4 cut(s)	256, 342, 534, 599
BssMI	GATC	3 cut(s)	130, 333, 656
BssT1I	CCWWGG	4 cut(s)	256, 342, 534, 599
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	112, 144, 386, 554
Bst6I	CTCTTC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	16, 475
BstDEI	CTNAG	2 cut(s)	451, 509
BstDSI	CCRYGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	117, 452
BstFNI	CGCG	2 cut(s)	41, 674
BstHHI	GCGC	2 cut(s)	6, 568
BstKTI	GATC	3 cut(s)	133, 336, 659
BstMAI	GTCTC	2 cut(s)	222, 367
BstMBI	GATC	3 cut(s)	130, 333, 656
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 122, 474, 512
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	572
BstPAI	GACNNNNGTC	1 cut(s)	741
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	2 cut(s)	41, 674
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	44, 72, 116, 236
BtgI	CCRYGG	1 cut(s)	534
BtgZI	GCGATG	3 cut(s)	22, 64, 666
BtsCI	GGATG	2 cut(s)	117, 452
BtsIMutI	CAGTG	2 cut(s)	382, 506
Cac8I	GCNNGC	2 cut(s)	16, 475
CfoI	GCGC	2 cut(s)	6, 568
Cfr10I	RCCGGY	2 cut(s)	72, 295
Cfr13I	GGNCC	5 cut(s)	59, 75, 593, 664, 723
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	429, 557
CviAII	CATG	5 cut(s)	10, 98, 535, 569, 589
CviQI	GTAC	2 cut(s)	429, 557
DdeI	CTNAG	2 cut(s)	451, 509
DpnI	GATC	3 cut(s)	132, 335, 658
DpnII	GATC	3 cut(s)	130, 333, 656
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	2 cut(s)	42, 114
Eam1104I	CTCTTC	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	370
Ecl136II	GAGCTC	1 cut(s)	515
Eco130I	CCWWGG	4 cut(s)	256, 342, 534, 599
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	5 cut(s)	59, 75, 593, 664, 723
Eco53kI	GAGCTC	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	4 cut(s)	256, 342, 534, 599
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	4 cut(s)	256, 342, 534, 599
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	5 cut(s)	13, 101, 538, 572, 592
FaiI	YATR	8 cut(s)	11, 99, 197, 410, 490, 536, 570, 590
FaqI	GGGAC	2 cut(s)	337, 606
FatI	CATG	5 cut(s)	9, 97, 534, 568, 588
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	7, 42
FokI	GGATG	2 cut(s)	104, 459
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	2 cut(s)	7, 42
FspBI	CTAG	4 cut(s)	68, 356, 600, 769
FspI	TGCGCA	2 cut(s)	5, 567
GlaI	GCGC	2 cut(s)	5, 567
GluI	GCNGC	2 cut(s)	7, 42
HaeIII	GGCC	4 cut(s)	44, 72, 116, 236
HapII	CCGG	5 cut(s)	73, 296, 444, 636, 712
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	2 cut(s)	6, 568
Hin1II	CATG	5 cut(s)	13, 101, 538, 572, 592
Hin6I	GCGC	2 cut(s)	4, 566
HinP1I	GCGC	2 cut(s)	4, 566
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	5 cut(s)	64, 201, 215, 338, 645
HpaII	CCGG	5 cut(s)	73, 296, 444, 636, 712
HphI	GGTGA	2 cut(s)	313, 433
Hpy166II	GTNNAC	7 cut(s)	280, 321, 441, 557, 559, 580, 623
Hpy188I	TCNGA	6 cut(s)	87, 214, 222, 333, 374, 484
Hpy188III	TCNNGA	2 cut(s)	134, 707
Hpy8I	GTNNAC	7 cut(s)	280, 321, 441, 557, 559, 580, 623
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	3 cut(s)	95, 417, 756
HpyCH4III	ACNGT	4 cut(s)	112, 144, 386, 554
HpyCH4V	TGCA	3 cut(s)	167, 506, 700
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 122, 474, 512
HpyF3I	CTNAG	2 cut(s)	451, 509
Hsp92II	CATG	5 cut(s)	13, 101, 538, 572, 592
HspAI	GCGC	2 cut(s)	4, 566
Kzo9I	GATC	3 cut(s)	130, 333, 656
LmnI	GCTCC	3 cut(s)	215, 222, 374
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	45, 437
MaeI	CTAG	4 cut(s)	68, 356, 600, 769
MalI	GATC	3 cut(s)	132, 335, 658
MboI	GATC	3 cut(s)	130, 333, 656
MboII	GAAGA	2 cut(s)	357, 392
MhlI	GDGCHC	2 cut(s)	391, 517
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	3 cut(s)	149, 500, 630
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	224, 332, 654
MmeI	TCCRAC	3 cut(s)	37, 352, 568
MnlI	CCTC	7 cut(s)	166, 222, 226, 235, 262, 749, 765
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	5 cut(s)	73, 296, 444, 636, 712
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	41, 674
MwoI	GCNNNNNNNGC	4 cut(s)	15, 122, 474, 512
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	130, 333, 656
NlaIII	CATG	5 cut(s)	13, 101, 538, 572, 592
NlaIV	GGNNCC	5 cut(s)	25, 376, 594, 666, 725
NsbI	TGCGCA	2 cut(s)	5, 567
NspI	RCATGY	1 cut(s)	572
PceI	AGGCCT	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	64, 201
PflFI	GACNNNGTC	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	8, 43
PleI	GAGTC	3 cut(s)	223, 332, 653
PpsI	GAGTC	3 cut(s)	223, 332, 653
PshAI	GACNNNNGTC	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	5 cut(s)	25, 376, 594, 666, 725
PspPI	GGNCC	5 cut(s)	59, 75, 593, 664, 723
PsyI	GACNNNGTC	1 cut(s)	584
RsaI	GTAC	2 cut(s)	430, 558
RsaNI	GTAC	2 cut(s)	429, 557
SacI	GAGCTC	1 cut(s)	517
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	7, 42
Sau3AI	GATC	3 cut(s)	130, 333, 656
Sau96I	GGNCC	5 cut(s)	59, 75, 593, 664, 723
SchI	GAGTC	3 cut(s)	224, 332, 654
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	2 cut(s)	391, 517
SetI	ASST	8 cut(s)	20, 273, 399, 457, 517, 550, 689, 741
SfaNI	GCATC	2 cut(s)	45, 437
SinI	GGWCC	5 cut(s)	59, 75, 593, 664, 723
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	149, 500, 630
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	3 cut(s)	41, 596, 674
SspMI	CTAG	4 cut(s)	68, 356, 600, 769
SstI	GAGCTC	1 cut(s)	517
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	4 cut(s)	256, 342, 534, 599
TaaI	ACNGT	4 cut(s)	112, 144, 386, 554
TaqI	TCGA	5 cut(s)	146, 204, 336, 617, 735
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	3 cut(s)	149, 500, 630
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	64, 201
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	389, 513
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	2 cut(s)	389, 513
Tth111I	GACNNNGTC	1 cut(s)	584
VpaK11BI	GGWCC	5 cut(s)	59, 75, 593, 664, 723
XapI	RAATTY	2 cut(s)	149, 500
XceI	RCATGY	1 cut(s)	572
XmaJI	CCTAGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	4 cut(s)	68, 356, 600, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.