Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007954

Physical Location & Seq

Genomic Coordinates Forward (+)

22929294 .. 22932802

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG231000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGGATAGACAAGCAGAGAAGGTCTATGTTGCAGTTGGGAATGATATACAAGATGGGTTTAAGACCTTGGAGTGGACACTGAAGAATTGGAATTCTCAGCCGATTTCCATAGTCATTCTTCATGTAGCTCACGACATTTCGAAGGATTTCGTCTATACCCCATTTGGGAAGCTCCCTGCAAGTTCTGTGAGTGATGAGAAATTGGAAGTTCTTATGAAATATGAGCAAGAAAAGATTGATAAGTTGCTGCACAAGTACTTAGCATTCTGTGGCCAGGTGAAGGCTCAAATACTAACAGTGGAAAAATGTGAGCAACCAATTCATAAAATCATTATGGATTTGATCTTTAGACACCAAATAACCAGACTGGTTATGGGATTCACTTTCTTGAAGACTTCGTCAACTTGGAGAATAAAGAGTGCAGTAAGTGGAGCATTTTACATTCATCATCACAAGCCGGATTTCTGCGAATTGTTCGTGATATGCGGGGGAAGACTTGTTTTCCTTAAAGGAGAAAATAACAAAGGAATCATGGAGGATGATCAAGGTGTCATTGTTGCAAAACTGAGAGAAAAGGCCAGTTTCAAAGGTTGGCTAGCAAAAATGTTCAATGAAACCTCAGCAACTTCCCCAGATACAACTTCAGCAACTTCCTCAGATACAACTTCAGCAAATCCCAACTCCCCAATTAGTTCACAGTACAATTGGGAATGCCATGTCCAAGAAATTGAAAATTATTTCCAGCATTTGTTATCCTTGAGATTGGAGGAAGAAGCTTGTGGGCAGGAGAATGTTGATGTTCAAAAAAATCCAATGGAATCTAACATGATTGCTGCAGAAGACATGAAAACAAAGCTAAAGGAAGCTCAAGAGACAATCAAGTTGAAAAGAAAGGAAGCCAAGGCCAATGTCGAAAGACAAACTAAAGCACAATGGGCCATTAGTCTATGCAATTCTCGGGCTGAAGAACTTGAAGCACAAATACAAGAAGAGGTGACTAACCAAGCAGAGTTAAAGAAAGCGCTAGACTCTGAAAAGGAACAGCTTCATGAAGTTATAATGGACACTGGAGAGAGCAGAAGTAGGCTAAATTCACTAATGGAGCTCCAATTTGAGCTCTCAAATAAGCTCCAAATTTCCACATTGGCGAAATCAAATACCGAGTCCCAACTAGAGAAGGCCGTAAGCAGCCGGGCAGAGATGGTTAGAGATATTGAGGAATTGCGGCAGCATAGAGATGTTCTACATCGTAGAATCGAGTTTTGTAAAGAAAAGGATGTCATTGGAATGGTTGGAAGGCTCACTGACACGAGCTGTGGATTCAAGAAGTACACAGCTGAAGAGATCAGATTGGCTACGAACAATTTTTCAGAACGCTTGAGAATTAAACCAGGAGGGGATTGGAACACTACTATGTATAGAGGGCGCATCAACCATGCCACGGTTGCAATCAAGATCCTCAACTTTGCTAAAGGAGACTCTAAGCAAGATTTTAAAGCTAAGGTTACAATTCTTAGCCACATAAGACACCCACATCTAGTAACAATGATTGGCTTCTGCACTGAGCTAAGGTGCATCGTGTTTGAATACATGCACAATGGTAGCTTGAGAGACGTATTACTGAGGGATTTATTGTTCTCCTCCCACATAAGCTCTAAGAAAAGAAAGCGAACCCTAGGGTGGCATGACCGTATCCGTATTGCGATGGAGATTTGCTCGGGCCTGGGCTTTCTCCACACAGCTAAGCCCAGACCCATTGTTCACGGACGACTTTCCTTATCCAACATCCTCCTTGATCGGAACCTCATCACGAAAATAAGTGGTTTTGGGCTCTCACGCACCCATAATGAACAAAGCATTAGATCAGACATTCGGGCTTTTGGGGTACTGATGATGCATCTTTTAACCGGAAGGAATTGGGCAGGACTAGGCCAGGCCATGAATATGGACCGAGCAGCTGTGATTCGTGATTTAGATGAGATGGCTGGACATTGGCCTTTGGACTTGGCAGAGAAACTTGCCGGGTTAGCCTTGACTTGCTTGACAAGTAACCGTGGACCTAGTCGAGATCTGAGGCTGGCAACAGTGATGGAAGAGCTCAATGAATTGAAGAGATATGGTGATGATATTCTGGCAAGAAGAAGATCTGAGGGGCTGATGGATGGAGATGTAGAAGAAATTGGCACCAGTGATGTACCTAGATGTTTCCTCTGCCCCATTTCTCAGGAAGTGATGAAGAATCCACATGTGGCAGCCGATGGATTTTCGTATGAACTTGAGACCATAGAGGAATGGCTAGGAATGGGGCATGAAACATCGTCCATGACAAACCTGAGGCTCAAGCACACATTTCTTACCCCTAATCACACCCTCCGTTCCCTAATTCAAGATTGGCATAATAAGAGGTCCCTTCCATTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

807

Amino Acids

92.02

Weight (kDa)

7.87

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	474 - 618	2.9e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	478 - 619	4.6e-15	Protein kinase domain
U-box	PF04564	732 - 802	2.6e-13	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65500 AT5G65500
fragaria_vesca	FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550 FvH4_1g19550
malus_domestica	MD15G1311300.v1.1
prunus_persica	Prupe.6G202700_v2.0.a1 Prupe.6G202700_v2.0.a1
pyrus_communis	pycom15g27510
rosa_chinensis	RchiOBHm_Chr2g0111061
rosa_laevigata	RLG00000017862
rosa_multiflora	Rmu_sc0003994.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132720
rosa_rugosa	Rorug02G0170800
rosa_samantha	Rh2AG223300 Rh2BG235200 Rh2CG226700 Rh2DG231000
rosa_wichuraiana	Rw2G017230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1058
AccB1I	GGYRCC	1 cut(s)	2183
AciI	CCGC	2 cut(s)	486, 1225
AclWI	GGATC	1 cut(s)	1450
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	3 cut(s)	91, 1090, 1134
AcuI	CTGAAG	5 cut(s)	101, 627, 651, 984, 1359
AfaI	GTAC	5 cut(s)	257, 701, 1331, 1887, 2196
AfeI	AGCGCT	1 cut(s)	1023
AfiI	CCNNNNNNNGG	5 cut(s)	72, 165, 280, 1441, 1680
AflIII	ACRYGT	1 cut(s)	2245
AjnI	CCWGG	4 cut(s)	273, 1390, 1722, 1932
AloI	GAACNNNNNNTCC	2 cut(s)	1619, 1651
Alw21I	GWGCWC	3 cut(s)	1107, 1119, 2100
Alw26I	GTCTC	4 cut(s)	866, 1470, 1605, 2273
AlwI	GGATC	1 cut(s)	1450
Ama87I	CYCGRG	2 cut(s)	957, 1717
Aor51HI	AGCGCT	1 cut(s)	1023
AoxI	GGCC	9 cut(s)	271, 576, 903, 936, 1179, 1720, 1930, 1935, 1994
ApeKI	GCWGC	6 cut(s)	247, 833, 1188, 1228, 1955, 2252
ApoI	RAATTY	3 cut(s)	91, 1090, 1134
ArsI	GACNNNNNNTTYG	2 cut(s)	1148, 1180
Asp700I	GAANNNNTTC	2 cut(s)	146, 1044
AspA2I	CCTAGG	1 cut(s)	1675
AspLEI	GCGC	2 cut(s)	1024, 1428
AspS9I	GGNCC	5 cut(s)	936, 1720, 1948, 2057, 2406
AsuC2I	CCSGG	2 cut(s)	1193, 2023
AsuHPI	GGTGA	3 cut(s)	289, 1006, 2132
AsuII	TTCGAA	1 cut(s)	140
AsuNHI	GCTAGC	1 cut(s)	595
AvaI	CYCGRG	2 cut(s)	957, 1717
AvaII	GGWCC	3 cut(s)	1948, 2057, 2406
AvrII	CCTAGG	1 cut(s)	1675
AxyI	CCTNAGG	1 cut(s)	2333
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	2183
BanII	GRGCYC	4 cut(s)	1107, 1119, 1833, 2100
BarI	GAAGNNNNNNTAC	2 cut(s)	966, 998
BauI	CACGAG	1 cut(s)	1309
BbsI	GAAGAC	3 cut(s)	398, 499, 846
Bbv12I	GWGCWC	3 cut(s)	1107, 1119, 2100
BbvCI	CCTCAGC	1 cut(s)	619
BbvI	GCAGC	6 cut(s)	234, 820, 1200, 1240, 1967, 2264
BccI	CCATC	8 cut(s)	47, 1195, 1699, 1975, 2083, 2152, 2156, 2252
BceAI	ACGGC	1 cut(s)	1166
BciT130I	CCWGG	4 cut(s)	275, 1392, 1724, 1934
BciVI	GTATCC	1 cut(s)	1703
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	2 cut(s)	1193, 2023
BcoDI	GTCTC	4 cut(s)	866, 1470, 1605, 2273
BfaI	CTAG	9 cut(s)	596, 1025, 1172, 1538, 1676, 1928, 2061, 2199, 2297
BfmI	CTRYAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	1025
BfuI	GTATCC	1 cut(s)	1703
BglII	AGATCT	2 cut(s)	2068, 2144
BisI	GCNGC	7 cut(s)	248, 834, 1189, 1226, 1229, 1956, 2253
BlnI	CCTAGG	1 cut(s)	1675
BlpI	GCTNAGC	1 cut(s)	1743
BlsI	GCNGC	7 cut(s)	249, 835, 1190, 1227, 1230, 1957, 2254
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	6 cut(s)	275, 1193, 1392, 1724, 1934, 2023
Bme18I	GGWCC	3 cut(s)	1948, 2057, 2406
BmeT110I	CYCGRG	2 cut(s)	957, 1717
BmgT120I	GGNCC	5 cut(s)	936, 1720, 1948, 2057, 2406
BmiI	GGNNCC	3 cut(s)	1802, 2185, 2408
BmrFI	CCNGG	6 cut(s)	275, 1193, 1392, 1724, 1934, 2023
BmsI	GCATC	4 cut(s)	1437, 1584, 1884, 1906
BmtI	GCTAGC	1 cut(s)	599
BpiI	GAAGAC	3 cut(s)	398, 499, 846
BplI	GAGNNNNNCTC	2 cut(s)	1700, 1732
BpmI	CTGGAG	1 cut(s)	1089
Bpu10I	CCTNAGC	3 cut(s)	619, 1500, 1568
Bpu1102I	GCTNAGC	1 cut(s)	1743
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	6 cut(s)	778, 852, 1399, 1627, 2297, 2324
BpuMI	CCSGG	2 cut(s)	1193, 2023
BsaI	GGTCTC	1 cut(s)	2273
BsaJI	CCNNGG	6 cut(s)	66, 900, 1440, 1675, 1723, 2053
BsaWI	WCCGGW	1 cut(s)	1907
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 165, 280, 1441, 1680
Bse1I	ACTGG	4 cut(s)	372, 579, 1072, 2187
Bse21I	CCTNAGG	1 cut(s)	2333
BseBI	CCWGG	4 cut(s)	275, 1392, 1724, 1934
BseDI	CCNNGG	6 cut(s)	66, 900, 1440, 1675, 1723, 2053
BseGI	GGATG	4 cut(s)	544, 1282, 1785, 2167
BseLI	CCNNNNNNNGG	5 cut(s)	72, 165, 280, 1441, 1680
BseNI	ACTGG	4 cut(s)	372, 579, 1072, 2187
BseRI	GAGGAG	1 cut(s)	1630
BseXI	GCAGC	6 cut(s)	234, 820, 1200, 1240, 1967, 2264
BsgI	GTGCAG	3 cut(s)	233, 441, 1543
BshFI	GGCC	9 cut(s)	273, 578, 905, 938, 1181, 1722, 1932, 1937, 1996
BshNI	GGYRCC	1 cut(s)	2183
BsiHKAI	GWGCWC	3 cut(s)	1107, 1119, 2100
BsiHKCI	CYCGRG	2 cut(s)	957, 1717
BsiSI	CCGG	4 cut(s)	458, 1192, 1908, 2022
BslFI	GGGAC	2 cut(s)	1150, 2392
BslI	CCNNNNNNNGG	5 cut(s)	72, 165, 280, 1441, 1680
BsmAI	GTCTC	4 cut(s)	866, 1470, 1605, 2273
BsmBI	CGTCTC	1 cut(s)	1605
BsmFI	GGGAC	2 cut(s)	1150, 2392
BsmI	GAATGC	2 cut(s)	263, 716
BsnI	GGCC	9 cut(s)	273, 578, 905, 938, 1181, 1722, 1932, 1937, 1996
Bso31I	GGTCTC	1 cut(s)	2273
BsoBI	CYCGRG	2 cut(s)	957, 1717
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	4 cut(s)	1107, 1119, 1833, 2100
Bsp143I	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
Bsp1720I	GCTNAGC	1 cut(s)	1743
BspACI	CCGC	2 cut(s)	486, 1225
BspANI	GGCC	9 cut(s)	273, 578, 905, 938, 1181, 1722, 1932, 1937, 1996
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	3 cut(s)	1802, 2185, 2408
BspMAI	CTGCAG	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	1450
BspQI	GCTCTTC	1 cut(s)	2088
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	2183
BspTNI	GGTCTC	1 cut(s)	2273
BsrI	ACTGG	4 cut(s)	372, 579, 1072, 2187
BssECI	CCNNGG	6 cut(s)	66, 900, 1440, 1675, 1723, 2053
BssMI	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
BssSI	CACGAG	1 cut(s)	1309
BssT1I	CCWWGG	3 cut(s)	66, 900, 1675
Bst2BI	CACGAG	1 cut(s)	1309
Bst2UI	CCWGG	4 cut(s)	275, 1392, 1724, 1934
Bst4CI	ACNGT	7 cut(s)	298, 699, 1444, 1691, 2054, 2086, 2421
Bst6I	CTCTTC	4 cut(s)	984, 1335, 2088, 2105
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	597, 2079
BstDSI	CCRYGG	2 cut(s)	1440, 2053
BstF5I	GGATG	4 cut(s)	544, 1282, 1785, 2167
BstH2I	RGCGCY	1 cut(s)	1025
BstHHI	GCGC	2 cut(s)	1024, 1428
BstKTI	GATC	8 cut(s)	345, 544, 1347, 1458, 1798, 1865, 2071, 2147
BstMAI	GTCTC	4 cut(s)	866, 1470, 1605, 2273
BstMBI	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
BstMWI	GCNNNNNNNGC	3 cut(s)	935, 1445, 2027
BstNI	CCWGG	4 cut(s)	275, 1392, 1724, 1934
BstNSI	RCATGY	2 cut(s)	1594, 2249
BstSCI	CCNGG	6 cut(s)	273, 1191, 1390, 1722, 1932, 2021
BstSFI	CTRYAG	1 cut(s)	834
BstV1I	GCAGC	6 cut(s)	234, 820, 1200, 1240, 1967, 2264
BstV2I	GAAGAC	3 cut(s)	398, 499, 846
BstX2I	RGATCY	3 cut(s)	1455, 2068, 2144
BstXI	CCANNNNNNTGG	1 cut(s)	1945
BstYI	RGATCY	3 cut(s)	1455, 2068, 2144
Bsu36I	CCTNAGG	1 cut(s)	2333
BsuI	GTATCC	1 cut(s)	1703
BsuRI	GGCC	9 cut(s)	273, 578, 905, 938, 1181, 1722, 1932, 1937, 1996
BtgI	CCRYGG	2 cut(s)	1440, 2053
BtgZI	GCGATG	1 cut(s)	1718
BtsCI	GGATG	4 cut(s)	544, 1282, 1785, 2167
BtsIMutI	CAGTG	7 cut(s)	77, 303, 1065, 1302, 1560, 2091, 2194
Cac8I	GCNNGC	2 cut(s)	597, 2079
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	2 cut(s)	1024, 1428
Cfr13I	GGNCC	5 cut(s)	936, 1720, 1948, 2057, 2406
Csp6I	GTAC	5 cut(s)	256, 700, 1330, 1886, 2195
CviQI	GTAC	5 cut(s)	256, 700, 1330, 1886, 2195
DpnI	GATC	8 cut(s)	344, 543, 1346, 1457, 1797, 1864, 2070, 2146
DpnII	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
DraI	TTTAAA	1 cut(s)	1495
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	4 cut(s)	984, 1335, 2088, 2105
EarI	CTCTTC	4 cut(s)	984, 1335, 2088, 2105
Ecl136II	GAGCTC	3 cut(s)	1105, 1117, 2098
Eco130I	CCWWGG	3 cut(s)	66, 900, 1675
Eco24I	GRGCYC	4 cut(s)	1107, 1119, 1833, 2100
Eco31I	GGTCTC	1 cut(s)	2273
Eco47I	GGWCC	3 cut(s)	1948, 2057, 2406
Eco47III	AGCGCT	1 cut(s)	1023
Eco53kI	GAGCTC	3 cut(s)	1105, 1117, 2098
Eco57I	CTGAAG	5 cut(s)	101, 627, 651, 984, 1359
Eco81I	CCTNAGG	1 cut(s)	2333
Eco88I	CYCGRG	2 cut(s)	957, 1717
EcoICRI	GAGCTC	3 cut(s)	1105, 1117, 2098
EcoO109I	RGGNCCY	1 cut(s)	2406
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	4 cut(s)	273, 1390, 1722, 1932
EcoT14I	CCWWGG	3 cut(s)	66, 900, 1675
EcoT22I	ATGCAT	1 cut(s)	1899
EcoT38I	GRGCYC	4 cut(s)	1107, 1119, 1833, 2100
ErhI	CCWWGG	3 cut(s)	66, 900, 1675
Esp3I	CGTCTC	1 cut(s)	1605
FaqI	GGGAC	2 cut(s)	1150, 2392
FauI	CCCGC	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	7 cut(s)	248, 834, 1189, 1226, 1229, 1956, 2253
FokI	GGATG	4 cut(s)	551, 1289, 1772, 2174
FriOI	GRGCYC	4 cut(s)	1107, 1119, 1833, 2100
Fsp4HI	GCNGC	7 cut(s)	248, 834, 1189, 1226, 1229, 1956, 2253
FspBI	CTAG	9 cut(s)	596, 1025, 1172, 1538, 1676, 1928, 2061, 2199, 2297
GlaI	GCGC	2 cut(s)	1023, 1427
GluI	GCNGC	7 cut(s)	248, 834, 1189, 1226, 1229, 1956, 2253
GsuI	CTGGAG	1 cut(s)	1089
HaeII	RGCGCY	1 cut(s)	1025
HaeIII	GGCC	9 cut(s)	273, 578, 905, 938, 1181, 1722, 1932, 1937, 1996
HapII	CCGG	4 cut(s)	458, 1192, 1908, 2022
HhaI	GCGC	2 cut(s)	1024, 1428
Hin6I	GCGC	2 cut(s)	1022, 1426
HinP1I	GCGC	2 cut(s)	1022, 1426
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	774
HpaII	CCGG	4 cut(s)	458, 1192, 1908, 2022
HphI	GGTGA	3 cut(s)	289, 1006, 2132
Hpy166II	GTNNAC	6 cut(s)	75, 402, 695, 1332, 1762, 2057
Hpy188I	TCNGA	8 cut(s)	658, 1033, 1349, 1372, 1800, 1867, 2073, 2149
Hpy8I	GTNNAC	6 cut(s)	75, 402, 695, 1332, 1762, 2057
HpyAV	CCTTC	7 cut(s)	13, 136, 274, 1171, 1290, 1905, 2420
HpyCH4III	ACNGT	7 cut(s)	298, 699, 1444, 1691, 2054, 2086, 2421
HpyCH4IV	ACGT	1 cut(s)	1614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	935, 1445, 2027
HpySE526I	ACGT	1 cut(s)	1614
HspAI	GCGC	2 cut(s)	1022, 1426
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
LguI	GCTCTTC	1 cut(s)	2088
LmnI	GCTCC	5 cut(s)	177, 431, 1102, 1110, 1134
Lsp1109I	GCAGC	6 cut(s)	234, 820, 1200, 1240, 1967, 2264
LweI	GCATC	4 cut(s)	1437, 1584, 1884, 1906
MaeI	CTAG	9 cut(s)	596, 1025, 1172, 1538, 1676, 1928, 2061, 2199, 2297
MaeII	ACGT	1 cut(s)	1614
MaeIII	GTNAC	4 cut(s)	994, 1504, 1540, 2048
MalI	GATC	8 cut(s)	344, 543, 1346, 1457, 1797, 1864, 2070, 2146
MboI	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
MfeI	CAATTG	1 cut(s)	703
MflI	RGATCY	3 cut(s)	1455, 2068, 2144
MhlI	GDGCHC	4 cut(s)	1107, 1119, 1833, 2100
MlsI	TGGCCA	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	3 cut(s)	1022, 1172, 1472
MmeI	TCCRAC	2 cut(s)	1273, 1806
Mox20I	TGGCCA	1 cut(s)	273
Mph1103I	ATGCAT	1 cut(s)	1899
MroXI	GAANNNNTTC	2 cut(s)	146, 1044
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	6 cut(s)	60, 507, 1013, 1386, 1494, 1904
MslI	CAYNNNNRTG	4 cut(s)	1236, 1286, 1412, 1943
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	1337, 1958
MspI	CCGG	4 cut(s)	458, 1192, 1908, 2022
MspR9I	CCNGG	6 cut(s)	275, 1193, 1392, 1724, 1934, 2023
MunI	CAATTG	1 cut(s)	703
Mva1269I	GAATGC	2 cut(s)	263, 716
MvaI	CCWGG	4 cut(s)	275, 1392, 1724, 1934
MwoI	GCNNNNNNNGC	3 cut(s)	935, 1445, 2027
NciI	CCSGG	2 cut(s)	1193, 2023
NdeII	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
NheI	GCTAGC	1 cut(s)	595
NlaIV	GGNNCC	3 cut(s)	1802, 2185, 2408
NmuCI	GTSAC	1 cut(s)	994
NsiI	ATGCAT	1 cut(s)	1899
NspI	RCATGY	2 cut(s)	1594, 2249
NspV	TTCGAA	1 cut(s)	140
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	1 cut(s)	2245
PciSI	GCTCTTC	1 cut(s)	2088
PctI	GAATGC	2 cut(s)	263, 716
PdmI	GAANNNNTTC	2 cut(s)	146, 1044
PfeI	GAWTC	7 cut(s)	378, 528, 818, 1254, 1320, 1963, 2239
PflFI	GACNNNGTC	2 cut(s)	397, 2061
PkrI	GCNGC	7 cut(s)	249, 835, 1190, 1227, 1230, 1957, 2254
PleI	GAGTC	3 cut(s)	1022, 1171, 1472
PpsI	GAGTC	3 cut(s)	1022, 1171, 1472
PpuMI	RGGWCCY	1 cut(s)	2406
PscI	ACATGT	1 cut(s)	2245
PsiI	TTATAA	1 cut(s)	1058
Psp124BI	GAGCTC	3 cut(s)	1107, 1119, 2100
Psp5II	RGGWCCY	1 cut(s)	2406
Psp6I	CCWGG	4 cut(s)	273, 1390, 1722, 1932
PspGI	CCWGG	4 cut(s)	273, 1390, 1722, 1932
PspN4I	GGNNCC	3 cut(s)	1802, 2185, 2408
PspPI	GGNCC	5 cut(s)	936, 1720, 1948, 2057, 2406
PspPPI	RGGWCCY	1 cut(s)	2406
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	3 cut(s)	1455, 2068, 2144
PsyI	GACNNNGTC	2 cut(s)	397, 2061
PvuII	CAGCTG	2 cut(s)	1337, 1958
RsaI	GTAC	5 cut(s)	257, 701, 1331, 1887, 2196
RsaNI	GTAC	5 cut(s)	256, 700, 1330, 1886, 2195
RseI	CAYNNNNRTG	4 cut(s)	1236, 1286, 1412, 1943
SacI	GAGCTC	3 cut(s)	1107, 1119, 2100
SapI	GCTCTTC	1 cut(s)	2088
SaqAI	TTAA	6 cut(s)	60, 507, 1013, 1386, 1494, 1904
SatI	GCNGC	7 cut(s)	248, 834, 1189, 1226, 1229, 1956, 2253
Sau3AI	GATC	8 cut(s)	342, 541, 1344, 1455, 1795, 1862, 2068, 2144
Sau96I	GGNCC	5 cut(s)	936, 1720, 1948, 2057, 2406
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	3 cut(s)	1022, 1172, 1472
ScrFI	CCNGG	6 cut(s)	275, 1193, 1392, 1724, 1934, 2023
SduI	GDGCHC	4 cut(s)	1107, 1119, 1833, 2100
SfaNI	GCATC	4 cut(s)	1437, 1584, 1884, 1906
SfcI	CTRYAG	1 cut(s)	834
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	3 cut(s)	1948, 2057, 2406
SmiMI	CAYNNNNRTG	4 cut(s)	1236, 1286, 1412, 1943
SmlI	CTYRAG	6 cut(s)	757, 867, 1378, 1606, 2276, 2339
SmoI	CTYRAG	6 cut(s)	757, 867, 1378, 1606, 2276, 2339
SsiI	CCGC	2 cut(s)	486, 1225
SspMI	CTAG	9 cut(s)	596, 1025, 1172, 1538, 1676, 1928, 2061, 2199, 2297
SstI	GAGCTC	3 cut(s)	1107, 1119, 2100
StyD4I	CCNGG	6 cut(s)	273, 1191, 1390, 1722, 1932, 2021
StyI	CCWWGG	3 cut(s)	66, 900, 1675
TaaI	ACNGT	7 cut(s)	298, 699, 1444, 1691, 2054, 2086, 2421
TaiI	ACGT	1 cut(s)	1617
TaqI	TCGA	4 cut(s)	140, 912, 1257, 2065
TaqII	GACCGA	1 cut(s)	1965
TatI	WGTACW	3 cut(s)	255, 699, 1329
TauI	GCSGC	1 cut(s)	1228
TfiI	GAWTC	7 cut(s)	378, 528, 818, 1254, 1320, 1963, 2239
Tru1I	TTAA	6 cut(s)	60, 507, 1013, 1386, 1494, 1904
Tru9I	TTAA	6 cut(s)	60, 507, 1013, 1386, 1494, 1904
TscAI	CASTG	7 cut(s)	84, 303, 1072, 1309, 1567, 2091, 2194
TseFI	GTSAC	1 cut(s)	994
TseI	GCWGC	6 cut(s)	247, 833, 1188, 1228, 1955, 2252
Tsp45I	GTSAC	1 cut(s)	994
TspGWI	ACGGA	3 cut(s)	1685, 1779, 2363
TspRI	CASTG	7 cut(s)	84, 303, 1072, 1309, 1567, 2091, 2194
Tth111I	GACNNNGTC	2 cut(s)	397, 2061
VpaK11BI	GGWCC	3 cut(s)	1948, 2057, 2406
XapI	RAATTY	3 cut(s)	91, 1090, 1134
XceI	RCATGY	2 cut(s)	1594, 2249
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 1398
XmaJI	CCTAGG	1 cut(s)	1675
XmnI	GAANNNNTTC	2 cut(s)	146, 1044
XspI	CTAG	9 cut(s)	596, 1025, 1172, 1538, 1676, 1928, 2061, 2199, 2297
ZrmI	AGTACT	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	1899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.