Rorug02G0273000

Uncharacterized protein At4g22758-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018058
Physical Location & Seq
Forward (+)
29172026 .. 29177066
5041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0273000.1

Sequence Viewer

Length: 582 bp
ATGAGGGTGAAGGGAGATAAAGATAAAGGTGAGGACAAGCACTCCAAGGAAATTGAACAAGTTGAAGAATTGGGTTCGATTGTTAGAGTTGAGTTTCCTCCAACGAAGCTTGTAATTGGCGGCGAAGCAACAAAGCGAGGTTCCGGCGGCGGCGAAGCAACAAAGCAAGGTTCCGACGGCGAAGCAACGAATCGAGGCTCCGACGGCGAGGCAATAGATCTTGGATGCGGCGGCAAAGCTAGCGGTGAAGAGGAACTACTGAGGCTACTGACCCCCAAAACGAAGCCCCAGGTCTCTTCTGACGAAGCCCTATCCAATTCCAAGGAGGAGGAGCCGATCAACGACGAAGAGGACGAGGAAGAGGTAGAGGCCGTCGCTCGCTCCGCCAACTCTGACGATGAAGACGCCGCCGAGGACAACTCCCGTGGCTCCGATGACGAGGCTGTGCCGGTCGAGAACGACTATGACTTTGAAGAAGAGGATGGAGCTAATGAAAGCAATGCTGATGTGAGCAAACGCAATAAGGCCAGGCTAGTATACTACTGGGGGTCAGTATACTACTGGGGATCAGTACACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.97

Weight (kDa)

4.3

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018058)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g26570
rosa_chinensis RchiOBHm_Chr2g0127581
rosa_laevigata RLG00000018953
rosa_multiflora Rmu_sc0004744.1_g000002
rosa_roxburghii Rroxscaffold_2G00116520
rosa_rugosa Rorug02G0273000
rosa_samantha Rh2BG334300 Rh2CG312300 Rh2CG312500 Rh2DG352400
rosa_wichuraiana Rw2G026380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 537, 555
AciI CCGC 8 cut(s) 120, 147, 150, 228, 231, 243, 384, 408
AclWI GGATC 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 573
AgsI TTSAA 3 cut(s) 56, 65, 473
AjnI CCWGG 2 cut(s) 288, 527
AluBI AGCT 3 cut(s) 109, 239, 488
AluI AGCT 3 cut(s) 109, 239, 488
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 574
AoxI GGCC 2 cut(s) 369, 525
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AsuHPI GGTGA 3 cut(s) 19, 41, 257
AsuNHI GCTAGC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BbsI GAAGAC 1 cut(s) 408
BccI CCATC 1 cut(s) 476
BceAI ACGGC 3 cut(s) 193, 220, 356
BciT130I CCWGG 2 cut(s) 290, 529
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 240, 533
BglII AGATCT 1 cut(s) 217
BisI GCNGC 6 cut(s) 121, 148, 151, 229, 232, 408
BlsI GCNGC 6 cut(s) 122, 149, 152, 230, 233, 409
Bme1390I CCNGG 2 cut(s) 290, 529
BmiI GGNNCC 5 cut(s) 142, 172, 199, 333, 430
BmrFI CCNGG 2 cut(s) 290, 529
BmrI ACTGGG 2 cut(s) 553, 571
BmsI GCATC 1 cut(s) 215
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 2 cut(s) 553, 571
BpiI GAAGAC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 5 cut(s) 45, 288, 321, 411, 424
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 2 cut(s) 548, 566
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 2 cut(s) 290, 529
BseDI CCNNGG 5 cut(s) 45, 288, 321, 411, 424
BseGI GGATG 2 cut(s) 230, 487
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 548, 566
BseRI GAGGAG 2 cut(s) 341, 344
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 2 cut(s) 371, 527
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 2 cut(s) 144, 449
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 2 cut(s) 371, 527
Bso31I GGTCTC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 217, 336, 566
BspACI CCGC 8 cut(s) 120, 147, 150, 228, 231, 243, 384, 408
BspANI GGCC 2 cut(s) 371, 527
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 5 cut(s) 142, 172, 199, 333, 430
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 574
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 2 cut(s) 548, 566
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 45, 288, 321, 411, 424
BssMI GATC 3 cut(s) 217, 336, 566
BssNAI GTATAC 2 cut(s) 538, 556
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 2 cut(s) 45, 321
Bst1107I GTATAC 2 cut(s) 538, 556
Bst2UI CCWGG 2 cut(s) 290, 529
Bst6I CTCTTC 5 cut(s) 243, 301, 342, 354, 471
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 241, 379
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 2 cut(s) 230, 487
BstKTI GATC 3 cut(s) 220, 339, 569
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 217, 336, 566
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 204, 240, 383
BstNI CCWGG 2 cut(s) 290, 529
BstSCI CCNGG 2 cut(s) 288, 527
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BstZ17I GTATAC 2 cut(s) 538, 556
BsuRI GGCC 2 cut(s) 371, 527
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 2 cut(s) 230, 487
Cac8I GCNNGC 2 cut(s) 241, 379
Cfr10I RCCGGY 1 cut(s) 448
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 572
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 1 cut(s) 260
DpnI GATC 3 cut(s) 219, 338, 568
DpnII GATC 3 cut(s) 217, 336, 566
Eam1104I CTCTTC 5 cut(s) 243, 301, 342, 354, 471
EarI CTCTTC 5 cut(s) 243, 301, 342, 354, 471
EciI GGCGGA 1 cut(s) 373
Eco130I CCWWGG 2 cut(s) 45, 321
Eco31I GGTCTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 288, 527
EcoT14I CCWWGG 2 cut(s) 45, 321
ErhI CCWWGG 2 cut(s) 45, 321
FaiI YATR 3 cut(s) 465, 538, 556
FblI GTMKAC 2 cut(s) 537, 555
Fnu4HI GCNGC 6 cut(s) 121, 148, 151, 229, 232, 408
FokI GGATG 2 cut(s) 237, 494
Fsp4HI GCNGC 6 cut(s) 121, 148, 151, 229, 232, 408
FspBI CTAG 2 cut(s) 240, 533
GluI GCNGC 6 cut(s) 121, 148, 151, 229, 232, 408
HaeIII GGCC 2 cut(s) 371, 527
HapII CCGG 2 cut(s) 144, 449
HgaI GACGC 1 cut(s) 413
Hin1I GRCGYC 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 190
HpaII CCGG 2 cut(s) 144, 449
HphI GGTGA 3 cut(s) 19, 41, 257
Hpy166II GTNNAC 3 cut(s) 538, 556, 574
Hpy188I TCNGA 5 cut(s) 175, 202, 301, 394, 433
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 3 cut(s) 538, 556, 574
Hpy99I CGWCG 4 cut(s) 179, 206, 347, 377
HpyAV CCTTC 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 240, 383
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 217, 336, 566
LmnI GCTCC 5 cut(s) 203, 331, 386, 434, 485
LpnPI CCDG 8 cut(s) 157, 275, 302, 462, 514, 529, 541, 547
LweI GCATC 1 cut(s) 215
MaeI CTAG 2 cut(s) 240, 533
MalI GATC 3 cut(s) 219, 338, 568
MboI GATC 3 cut(s) 217, 336, 566
MboII GAAGA 8 cut(s) 77, 260, 288, 359, 371, 413, 485, 488
MflI RGATCY 1 cut(s) 217
MluCI AATT 4 cut(s) 51, 68, 114, 316
MmeI TCCRAC 3 cut(s) 125, 198, 225
MspI CCGG 2 cut(s) 144, 449
MspR9I CCNGG 2 cut(s) 290, 529
MvaI CCWGG 2 cut(s) 290, 529
MwoI GCNNNNNNNGC 3 cut(s) 204, 240, 383
NdeII GATC 3 cut(s) 217, 336, 566
NheI GCTAGC 1 cut(s) 239
NlaIV GGNNCC 5 cut(s) 142, 172, 199, 333, 430
NmeAIII GCCGAG 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 6 cut(s) 122, 149, 152, 230, 233, 409
Psp6I CCWGG 2 cut(s) 288, 527
PspGI CCWGG 2 cut(s) 288, 527
PspN4I GGNNCC 5 cut(s) 142, 172, 199, 333, 430
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SatI GCNGC 6 cut(s) 121, 148, 151, 229, 232, 408
Sau3AI GATC 3 cut(s) 217, 336, 566
ScrFI CCNGG 2 cut(s) 290, 529
SetI ASST 8 cut(s) 31, 111, 142, 172, 241, 294, 366, 490
SfaNI GCATC 1 cut(s) 215
Sse9I AATT 4 cut(s) 51, 68, 114, 316
SsiI CCGC 8 cut(s) 120, 147, 150, 228, 231, 243, 384, 408
SspMI CTAG 2 cut(s) 240, 533
StyD4I CCNGG 2 cut(s) 288, 527
StyI CCWWGG 2 cut(s) 45, 321
TaqI TCGA 3 cut(s) 77, 193, 453
TasI AATT 4 cut(s) 51, 68, 114, 316
TatI WGTACW 1 cut(s) 571
TauI GCSGC 6 cut(s) 123, 150, 153, 231, 234, 410
TfiI GAWTC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 414, 507
XmiI GTMKAC 2 cut(s) 537, 555
XspI CTAG 2 cut(s) 240, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.