Rorug02G0315500

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019733
Physical Location & Seq
Reverse (-)
38353058 .. 38353780
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0315500.1

Sequence Viewer

Length: 723 bp
ATGCATGGGGATGTTATTAGATGGCTGAATCAGTGTGCTACAGATTTGTCATTAGCTCACTTTGGTGAGTTGTTGTTCTCTATATGGGGAGTTTGGAAGGAAAGAAATGATCGCATTTGGAATAAAAAAACATGTGAAGCCCGGGATGTTAGCTTGGGGATTGTCTCTCGGTTGCAGGAATTTAGGTTCCATACCATGCAGCTGTCGCAACCTAAACTTGCAGGTAGAGCAGTGTGGAGGGTGCCTCCAGTGGGGTTGATTAAGATCAATGTGGATGGTGCATTTCATCATGTCACTAGGAAAGGTGGTGTGGGTTTTGTGATTAGAAACGAGGTTGGGATGATGTTAGGCGGTGGGGCTGGGCCGTTGAGTGGGTTGCTGTCGCCGGAACATGCGGAAATTTTAGCATGCAAAGCAGCGTTAGAGTTCGCAGGGGAGCATGGCTTTGGTCCGGCTATATTGGAAACTGATGCATTGGAGGTTCAGCGTCAACTTTCCATGAGTGACTCTGCCAACTTGTCGTTACTGGGCAGAATATATGAGGATGTGGTGGCTCTTTTGGAAGCTCAGAGGGTGGTACAGGTGCTACATGTTGGTAGGCGGGGCAATGGGGTAGCGCATTTGTTGGCTACACATGGCCACTCTCTTAGGCAGAATGCCTTCTACTTTTCAATTCCAGATTTCTTACAAGCTGCAATTGCAGCTGAACTTTGTCCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000166 GO:0001505 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004620 GO:0004623 GO:0004857 GO:0004860 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006469 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006587 GO:0006588 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008144 GO:0008150 GO:0008152 GO:0008426 GO:0009058 GO:0009072 GO:0009308 GO:0009506 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010563 GO:0010605 GO:0012505 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0017076 GO:0018130 GO:0018958 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019438 GO:0019752 GO:0019887 GO:0030054 GO:0030234 GO:0030291 GO:0030312 GO:0030554 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031570 GO:0032268 GO:0032269 GO:0032553 GO:0032555 GO:0032559 GO:0032768 GO:0032770 GO:0033554 GO:0033673 GO:0034641 GO:0035639 GO:0036094 GO:0042133 GO:0042136 GO:0042221 GO:0042325 GO:0042326 GO:0042427 GO:0042428 GO:0042430 GO:0042435 GO:0043085 GO:0043086 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043549 GO:0044092 GO:0044093 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045786 GO:0045859 GO:0045936 GO:0046189 GO:0046483 GO:0046686 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051341 GO:0051348 GO:0051353 GO:0051716 GO:0051726 GO:0052689 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0097159 GO:0097164 GO:0097367 GO:0098772 GO:1901160 GO:1901162 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901615 GO:1901617
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04142 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04142 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

240

Amino Acids

26.33

Weight (kDa)

7.18

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 90 - 212 9.7e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019733)

Species Orthologous Gene IDs
malus_domestica MD07G1164300.v1.1 MD10G1023000.v1.1
prunus_persica Prupe.1G302200_v2.0.a1
rosa_rugosa Rorug02G0315400.1 Rorug02G0315500 Rorug02G0315600 Rorug02G0315700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 3 cut(s) 351, 395, 601
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 2 cut(s) 179, 399
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 2 cut(s) 251, 371
AflIII ACRYGT 2 cut(s) 131, 589
AgsI TTSAA 1 cut(s) 672
AleI CACNNNNGTG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 170, 202
AluBI AGCT 6 cut(s) 56, 153, 202, 566, 692, 704
AluI AGCT 6 cut(s) 56, 153, 202, 566, 692, 704
Alw26I GTCTC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 2 cut(s) 362, 637
ApeKI GCWGC 4 cut(s) 199, 416, 692, 701
ApoI RAATTY 2 cut(s) 179, 399
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 1 cut(s) 619
AspS9I GGNCC 2 cut(s) 362, 449
AsuC2I CCSGG 2 cut(s) 142, 143
AsuHPI GGTGA 1 cut(s) 77
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 241
BbvI GCAGC 4 cut(s) 211, 428, 679, 713
BccI CCATC 2 cut(s) 15, 269
BceAI ACGGC 1 cut(s) 349
BcnI CCSGG 2 cut(s) 142, 143
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 212
BisI GCNGC 4 cut(s) 200, 417, 693, 702
BlsI GCNGC 4 cut(s) 201, 418, 694, 703
Bme1390I CCNGG 2 cut(s) 142, 143
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 362, 449
BmiI GGNNCC 2 cut(s) 188, 243
BmrFI CCNGG 2 cut(s) 142, 143
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 536
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpmI CTGGAG 1 cut(s) 231
BpuMI CCSGG 2 cut(s) 142, 143
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 371
Bse1I ACTGG 3 cut(s) 248, 531, 716
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 5 cut(s) 16, 151, 280, 345, 550
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 2 cut(s) 251, 371
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 3 cut(s) 248, 531, 716
BseXI GCAGC 4 cut(s) 211, 428, 679, 713
BseYI CCCAGC 1 cut(s) 359
BshFI GGCC 2 cut(s) 364, 639
BshNI GGYRCC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 142, 386, 452
BslI CCNNNNNNNGG 2 cut(s) 251, 371
BsmAI GTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 364, 639
BsoBI CYCGRG 1 cut(s) 141
Bsp143I GATC 2 cut(s) 109, 264
BspACI CCGC 3 cut(s) 351, 395, 601
BspANI GGCC 2 cut(s) 364, 639
BspCNI CTCAG 1 cut(s) 580
BspLI GGNNCC 2 cut(s) 188, 243
BspMI ACCTGC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 3 cut(s) 248, 531, 716
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 109, 264
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 2 cut(s) 567, 647
BstF5I GGATG 5 cut(s) 16, 151, 280, 345, 550
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 2 cut(s) 112, 267
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 109, 264
BstMWI GCNNNNNNNGC 5 cut(s) 205, 227, 413, 698, 701
BstNSI RCATGY 4 cut(s) 135, 395, 411, 593
BstSCI CCNGG 2 cut(s) 140, 141
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 211, 428, 679, 713
BsuRI GGCC 2 cut(s) 364, 639
BtsCI GGATG 5 cut(s) 16, 151, 280, 345, 550
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 4 cut(s) 38, 237, 255, 723
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 409
CfoI GCGC 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 362, 449
Cfr9I CCCGGG 1 cut(s) 141
CseI GACGC 1 cut(s) 476
Csp6I GTAC 1 cut(s) 578
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 2 cut(s) 567, 647
DpnI GATC 2 cut(s) 111, 266
DpnII GATC 2 cut(s) 109, 264
EaeI YGGCCR 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 141
EcoT22I ATGCAT 2 cut(s) 6, 475
FauI CCCGC 1 cut(s) 594
Fnu4HI GCNGC 4 cut(s) 200, 417, 693, 702
FokI GGATG 5 cut(s) 23, 158, 287, 352, 557
Fsp4HI GCNGC 4 cut(s) 200, 417, 693, 702
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 618
GluI GCNGC 4 cut(s) 200, 417, 693, 702
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 364, 639
HapII CCGG 3 cut(s) 142, 386, 452
HgaI GACGC 1 cut(s) 476
HhaI GCGC 1 cut(s) 619
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HinfI GANTC 2 cut(s) 28, 506
HpaII CCGG 3 cut(s) 142, 386, 452
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 1 cut(s) 570
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 2 cut(s) 91, 670
HpyCH4V TGCA 9 cut(s) 4, 175, 199, 221, 281, 411, 473, 695, 701
HpyF10VI GCNNNNNNNGC 5 cut(s) 205, 227, 413, 698, 701
HpyF3I CTNAG 2 cut(s) 567, 647
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 109, 264
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 4 cut(s) 211, 428, 679, 713
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 292, 503, 522
MalI GATC 2 cut(s) 111, 266
MboI GATC 2 cut(s) 109, 264
MfeI CAATTG 1 cut(s) 696
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 4 cut(s) 179, 399, 672, 696
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 1 cut(s) 500
MnlI CCTC 6 cut(s) 231, 255, 325, 472, 535, 564
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 2 cut(s) 6, 475
MroXI GAANNNNTTC 1 cut(s) 659
MscI TGGCCA 1 cut(s) 639
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 2 cut(s) 9, 63
Msp20I TGGCCA 1 cut(s) 639
MspA1I CMGCKG 2 cut(s) 202, 704
MspI CCGG 3 cut(s) 142, 386, 452
MspR9I CCNGG 2 cut(s) 142, 143
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 661
MwoI GCNNNNNNNGC 5 cut(s) 205, 227, 413, 698, 701
NciI CCSGG 2 cut(s) 142, 143
NdeII GATC 2 cut(s) 109, 264
NlaIV GGNNCC 2 cut(s) 188, 243
NmuCI GTSAC 2 cut(s) 292, 503
NsiI ATGCAT 2 cut(s) 6, 475
NspI RCATGY 4 cut(s) 135, 395, 411, 593
OliI CACNNNNGTG 1 cut(s) 63
PaeI GCATGC 1 cut(s) 411
PciI ACATGT 2 cut(s) 131, 589
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 4 cut(s) 201, 418, 694, 703
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PscI ACATGT 2 cut(s) 131, 589
PspFI CCCAGC 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 188, 243
PspPI GGNCC 2 cut(s) 362, 449
PvuII CAGCTG 2 cut(s) 202, 704
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 2 cut(s) 9, 63
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 4 cut(s) 200, 417, 693, 702
Sau3AI GATC 2 cut(s) 109, 264
Sau96I GGNCC 2 cut(s) 362, 449
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 142, 143
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 449
SmaI CCCGGG 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 9, 63
SphI GCATGC 1 cut(s) 411
Sse9I AATT 4 cut(s) 179, 399, 672, 696
SsiI CCGC 3 cut(s) 351, 395, 601
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 140, 141
TasI AATT 4 cut(s) 179, 399, 672, 696
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 4 cut(s) 38, 237, 255, 723
TseFI GTSAC 2 cut(s) 292, 503
TseI GCWGC 4 cut(s) 199, 416, 692, 701
Tsp45I GTSAC 2 cut(s) 292, 503
TspDTI ATGAA 1 cut(s) 275
TspMI CCCGGG 1 cut(s) 141
TspRI CASTG 4 cut(s) 38, 237, 255, 723
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 2 cut(s) 179, 399
XceI RCATGY 4 cut(s) 135, 395, 411, 593
XmaI CCCGGG 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 297
Zsp2I ATGCAT 2 cut(s) 6, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.