Rorug02G0421800

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
54201847 .. 54203765
1919 bp
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UTR
Exon/CDS
Intron
Rorug02G0421800.1

Sequence Viewer

Length: 819 bp
ATGGCCGGAATTGTGGTGGTTTTTGACTTTGACAAGACCATCATCGACTGCGACAGCGACAACTGGGTCGTCGATGGGTTGGGTGCCACTGACTTGTTCAATCAGCTCCTCCCCACCATGCCTTGGAACTCTCTCATGGATAGGATGATGAAGGAGCTTCATTCACAAGGAAAAACGATTGAGGACATTGTGGAGGTGCTCAAAAGGACTCCAATTCATCCCAGAATTGTGCCAGCCATTAAAGCAGCTCATGCTTTAGGATGTGATTTGAGGATTGTGAGTGATGCAAATCTGTTTTTCATCGAGACGATTTTGAATCATCTTGGTCTGGAGGAATATTTCTCAGAAATCAACACTAACCGAGGTTATGTTGATGAAGAAGGAAGGGTTAGGATTTCACCTTTCTGTGATTTCACCAATTCCCCTCATGGCTGCAGCCTCTGCCCTCCTAATATGTGCAAGAGTGTGATAATTGAGAGAATCCAAGCTTCGACTGAAGGGAGGAAAAGGATGATCTACTTGGGTGATGGAGTTGGTGATTACTGCCCAAGCTTGAAGCTCAAGGAAGGAGATTTCGTAATGCCAAGGAAGAATTTCCCACTTTTTGATAAGATTTGCCAGAATCCTCTGGCTCTGAAGGCCGAGATTCATGAGTGGACTGATGGAGAAGAGCTTGAGCACATTTTGCTCAACCTGATCAACACAATCGCCGTGGAAGAGAGTGCTGCTGCTCAGTTCATTACGAGTGACTGCAAGTTACAGACCATCTCTGTTTCTAGTCATGAGGCCTTCCCTAAAGCTCTCCCAGTTCAGCAGTAG

Protein Analysis

272

Amino Acids

30.51

Weight (kDa)

4.97

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Put_Phosphatase PF06888 4 - 233 3.3e-93 Putative Phosphatase
HAD PF12710 6 - 129 3.1e-07 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 2 cut(s) 516, 656
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 3 cut(s) 100, 316, 556
AluBI AGCT 8 cut(s) 106, 157, 248, 488, 552, 559, 673, 800
AluI AGCT 8 cut(s) 106, 157, 248, 488, 552, 559, 673, 800
Alw21I GWGCWC 2 cut(s) 201, 681
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 441
AoxI GGCC 3 cut(s) 3, 639, 786
ApeKI GCWGC 5 cut(s) 245, 432, 435, 725, 728
ApoI RAATTY 1 cut(s) 592
Asp700I GAANNNNTTC 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 390, 406, 536, 548
BanI GGYRCC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 201, 681
BbvI GCAGC 5 cut(s) 257, 419, 447, 712, 715
BccI CCATC 5 cut(s) 47, 68, 521, 656, 773
BceAI ACGGC 1 cut(s) 695
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 433
BisI GCNGC 5 cut(s) 246, 433, 436, 726, 729
BlsI GCNGC 5 cut(s) 247, 434, 437, 727, 730
BmiI GGNNCC 1 cut(s) 85
BmrI ACTGGG 2 cut(s) 73, 800
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 2 cut(s) 73, 800
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 545, 695
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 122, 361, 584, 711
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 68, 806
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 122, 361, 584, 711
BseGI GGATG 4 cut(s) 150, 217, 266, 516
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 357, 746
BseNI ACTGG 2 cut(s) 68, 806
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 5 cut(s) 257, 419, 447, 712, 715
BshFI GGCC 3 cut(s) 5, 641, 788
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 201, 681
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsnI GGCC 3 cut(s) 5, 641, 788
Bsp1286I GDGCHC 2 cut(s) 201, 681
Bsp143I GATC 2 cut(s) 513, 696
BspANI GGCC 3 cut(s) 5, 641, 788
BspCNI CTCAG 2 cut(s) 356, 745
BspHI TCATGA 2 cut(s) 649, 781
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 83
BsrI ACTGG 2 cut(s) 68, 806
BssECI CCNNGG 4 cut(s) 122, 361, 584, 711
BssMI GATC 2 cut(s) 513, 696
BssT1I CCWWGG 2 cut(s) 122, 584
Bst6I CTCTTC 2 cut(s) 663, 711
BstAPI GCANNNNNTGC 3 cut(s) 251, 441, 685
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 343, 732
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 4 cut(s) 150, 217, 266, 516
BstKTI GATC 2 cut(s) 516, 699
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 513, 696
BstMWI GCNNNNNNNGC 5 cut(s) 242, 251, 441, 638, 685
BstSFI CTRYAG 1 cut(s) 433
BstV1I GCAGC 5 cut(s) 257, 419, 447, 712, 715
BsuRI GGCC 3 cut(s) 5, 641, 788
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 4 cut(s) 150, 217, 266, 516
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 441
CciI TCATGA 2 cut(s) 649, 781
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 6 cut(s) 118, 136, 251, 428, 650, 782
DdeI CTNAG 2 cut(s) 343, 732
DpnI GATC 2 cut(s) 515, 698
DpnII GATC 2 cut(s) 513, 696
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 663, 711
EarI CTCTTC 2 cut(s) 663, 711
Eco130I CCWWGG 2 cut(s) 122, 584
Eco147I AGGCCT 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 516, 656
EcoT14I CCWWGG 2 cut(s) 122, 584
ErhI CCWWGG 2 cut(s) 122, 584
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 6 cut(s) 121, 139, 254, 431, 653, 785
FaiI YATR 8 cut(s) 119, 137, 252, 369, 429, 455, 651, 783
FatI CATG 6 cut(s) 117, 135, 250, 427, 649, 781
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 5 cut(s) 246, 433, 436, 726, 729
FokI GGATG 4 cut(s) 157, 204, 273, 523
Fsp4HI GCNGC 5 cut(s) 246, 433, 436, 726, 729
FspBI CTAG 1 cut(s) 777
GluI GCNGC 5 cut(s) 246, 433, 436, 726, 729
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 3 cut(s) 5, 641, 788
HapII CCGG 1 cut(s) 6
Hin1II CATG 6 cut(s) 121, 139, 254, 431, 653, 785
HindIII AAGCTT 2 cut(s) 486, 550
HinfI GANTC 5 cut(s) 208, 316, 480, 622, 646
HpaII CCGG 1 cut(s) 6
HphI GGTGA 4 cut(s) 390, 406, 536, 548
Hpy166II GTNNAC 1 cut(s) 657
Hpy188I TCNGA 2 cut(s) 346, 636
Hpy188III TCNNGA 4 cut(s) 304, 329, 650, 782
Hpy8I GTNNAC 1 cut(s) 657
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 7 cut(s) 145, 374, 378, 491, 560, 631, 799
HpyCH4V TGCA 4 cut(s) 287, 435, 459, 753
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 251, 441, 638, 685
HpyF3I CTNAG 2 cut(s) 343, 732
Hsp92II CATG 6 cut(s) 121, 139, 254, 431, 653, 785
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 2 cut(s) 513, 696
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 2 cut(s) 111, 154
LpnPI CCDG 8 cut(s) 19, 49, 235, 246, 314, 614, 632, 707
Lsp1109I GCAGC 5 cut(s) 257, 419, 447, 712, 715
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 777
MaeIII GTNAC 2 cut(s) 746, 756
MalI GATC 2 cut(s) 515, 698
MboI GATC 2 cut(s) 513, 696
MboII GAAGA 4 cut(s) 389, 601, 680, 728
MhlI GDGCHC 2 cut(s) 201, 681
MluCI AATT 6 cut(s) 9, 213, 225, 418, 471, 592
MlyI GAGTC 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 593
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 5 cut(s) 242, 251, 441, 638, 685
NdeII GATC 2 cut(s) 513, 696
NlaIII CATG 6 cut(s) 121, 139, 254, 431, 653, 785
NlaIV GGNNCC 1 cut(s) 85
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 1 cut(s) 746
PagI TCATGA 2 cut(s) 649, 781
PceI AGGCCT 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 4 cut(s) 316, 480, 622, 646
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 5 cut(s) 247, 434, 437, 727, 730
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 663
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 5 cut(s) 246, 433, 436, 726, 729
Sau3AI GATC 2 cut(s) 513, 696
SchI GAGTC 1 cut(s) 202
SduI GDGCHC 2 cut(s) 201, 681
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 433
SmlI CTYRAG 2 cut(s) 560, 674
SmoI CTYRAG 2 cut(s) 560, 674
Sse9I AATT 6 cut(s) 9, 213, 225, 418, 471, 592
SseBI AGGCCT 1 cut(s) 788
SspI AATATT 1 cut(s) 338
SspMI CTAG 1 cut(s) 777
StuI AGGCCT 1 cut(s) 788
StyI CCWWGG 2 cut(s) 122, 584
TaqI TCGA 4 cut(s) 45, 72, 303, 491
TasI AATT 6 cut(s) 9, 213, 225, 418, 471, 592
TfiI GAWTC 4 cut(s) 316, 480, 622, 646
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 5 cut(s) 245, 432, 435, 725, 728
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 7 cut(s) 149, 164, 206, 289, 390, 638, 727
TspRI CASTG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 123
XapI RAATTY 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.