Rorug02G0541600

Serine/Threonine protein kinases, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010184
Physical Location & Seq
Forward (+)
67136031 .. 67136810
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0541600.1

Sequence Viewer

Length: 279 bp
ATGAGTACTGCTTCAAGAACAAGCAAGGCTATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCATTGAAGGACCAAGGGATTTGCAGGTGGAACTCACCCACAATAAGATCCGTCCATCAACAGGCCAAGAACCATTTCAGGTCTTCTTCTCAGGCGAACAAGAACAAGCTCTCTTCTTCTTCAACCTCAGCTTTGAGCAGAGTCAGAGACGAGAAGCTGAAGAAGTCGGAGGAGTCTTTGAGGACGGTCATGTACTTGAGCTGCTGGGGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

92

Amino Acids

10.11

Weight (kDa)

10.29

Isoelectric Point (pI)

70.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 12 - 91 1e-33 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 7, 254
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 3 cut(s) 15, 67, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 169, 191, 217, 261
AluI AGCT 4 cut(s) 169, 191, 217, 261
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 102
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 38, 261
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 70, 269
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 2 cut(s) 70, 269
BbsI GAAGAC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 50, 248
BccI CCATC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 2 cut(s) 39, 262
BlsI GCNGC 2 cut(s) 40, 263
BmcAI AGTACT 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 70, 269
BmgT120I GGNCC 2 cut(s) 70, 269
BmiI GGNNCC 2 cut(s) 270, 271
BpiI GAAGAC 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 164, 201
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 50, 248
BseYI CCCAGC 1 cut(s) 264
BshFI GGCC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 107
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 163, 200
BspLI GGNNCC 2 cut(s) 270, 271
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 150, 187
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 50, 248
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 1 cut(s) 125
BveI ACCTGC 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 70, 269
Csp6I GTAC 2 cut(s) 6, 253
CviAII CATG 1 cut(s) 250
CviJI RGCY 6 cut(s) 29, 125, 169, 191, 217, 261
CviKI_1 RGCY 6 cut(s) 29, 125, 169, 191, 217, 261
CviQI GTAC 2 cut(s) 6, 253
DdeI CTNAG 2 cut(s) 150, 187
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 70, 269
Eco57I CTGAAG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 201
FaeI CATG 1 cut(s) 253
FaiI YATR 1 cut(s) 251
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 39, 262
Fsp4HI GCNGC 2 cut(s) 39, 262
GluI GCNGC 2 cut(s) 39, 262
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 1 cut(s) 253
HinfI GANTC 2 cut(s) 201, 233
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 206, 229
Hpy188III TCNNGA 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 150, 187
Hsp92II CATG 1 cut(s) 253
KflI GGGWCCC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 70, 107, 124, 137, 250
Lsp1109I GCAGC 2 cut(s) 50, 248
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 6 cut(s) 135, 138, 165, 168, 171, 232
MflI RGATCY 1 cut(s) 107
MlyI GAGTC 2 cut(s) 210, 242
MmeI TCCRAC 2 cut(s) 28, 207
MnlI CCTC 4 cut(s) 52, 196, 223, 234
MroXI GAANNNNTTC 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 107
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 270, 271
PaqCI CACCTGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 40, 263
PleI GAGTC 2 cut(s) 209, 241
PpsI GAGTC 2 cut(s) 209, 241
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 270, 271
PspPI GGNCC 2 cut(s) 70, 269
PspPPI RGGWCCY 1 cut(s) 269
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 2 cut(s) 7, 254
RsaNI GTAC 2 cut(s) 6, 253
SatI GCNGC 2 cut(s) 39, 262
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 2 cut(s) 70, 269
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 210, 242
SetI ASST 7 cut(s) 89, 143, 171, 188, 193, 219, 263
SinI GGWCC 2 cut(s) 70, 269
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 247
TatI WGTACW 2 cut(s) 5, 252
TseI GCWGC 2 cut(s) 38, 261
TspGWI ACGGA 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 70, 269
XmnI GAANNNNTTC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.