Rorug03G0015500

Calmodulin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007733
Physical Location & Seq
Reverse (-)
1240990 .. 1244266
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0015500.1

Sequence Viewer

Length: 918 bp
ATGGCTTCTCTTCTCTTCCTCCAACCTCTCACCAATCTCTCTTCCTCCACCACCCTCGTCTTTCTCCGTAATCCCCACCACATCCCCACTTCAACCTCCCTTAAACCCTCCAACACCCCCAAACCCCTCACATTCAAATCCTTCACCACTTCCTTCTCCCTCGCCGAATCCGACTCCCCCAAATCTTTACAACCCGAAATCCGACCCGTTCTCCTAGAACTCGCTGACAGCTTTGATCTTCCTCCGGACTACTTTGCTAAGCTGCCTAACGATCTTCGTCTCGACCTGAATGACGCTGCTTTTGACCTTTCAAATGGAAAGATCGTTGATGAGTGTGGTCAAGAGTTGGGAGAGACATTGTTAAATCTCTCTCGTGCATGGGAAGTAGCTGACACGTCAACGTCGCATAGTTTAGCTAGCAAGCTCCCTGACTTGGAAGAATCTTTGACAGACAATGCCAAATCAGCACTTGGGAAGCGTTTGGTTTCGGCTGGAAGAAGGTTCCAGTCTATGGGACAGTATGGTGAAGGCGAACTGCAAAAGATTGCAAAAACACTGACTAGGGCCGGAAAGCTTCTATCTGCAAGTTCAACATCCACTGTGACTGATGCAGAACCAAAGAATGAAAGCAGGATGCTGAAGTTTGGAGAACTTCAGCTCGAGCTTACATCAGAAAAAGCTACCGTTGGGGCTATCATCAGCTTTGCCTTCGGGATTCTTTCATGGCAACTAGCTCAAGGCGTCCAAAACACCCCAGAGAGTTCATTGCAGTATGCAAACGACAATGCTTTGCTGCTGGCTAAGTCTTTGAGGGGAGCTCTACTTGCAGCCTGCTATTCCTCAGCCATATTGTCTGCTTTTACTACCTTCGGACTTATCTTACTTGGAAGGCAACTAAAGTCACCAAAAGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0002229 GO:0002237 GO:0002239 GO:0002376 GO:0002682 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009696 GO:0009697 GO:0009787 GO:0009789 GO:0009814 GO:0009816 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010112 GO:0010224 GO:0010337 GO:0010468 GO:0010556 GO:0010565 GO:0010646 GO:0010647 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0023051 GO:0023056 GO:0031323 GO:0031326 GO:0031347 GO:0032101 GO:0032350 GO:0032787 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0046189 GO:0046394 GO:0046885 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0070482 GO:0070887 GO:0071216 GO:0071219 GO:0071453 GO:0071456 GO:0071704 GO:0072330 GO:0080090 GO:0080134 GO:0080142 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901419 GO:1901421 GO:1901576 GO:1901615 GO:1901617 GO:1902584 GO:1903506 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calmodulin_bind

Protein Analysis

305

Amino Acids

32.98

Weight (kDa)

6.01

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 511
AccIII TCCGGA 1 cut(s) 244
AcuI CTGAAG 2 cut(s) 638, 659
AcyI GRCGYC 1 cut(s) 741
AfiI CCNNNNNNNGG 2 cut(s) 433, 511
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 93, 136, 312, 591
AjiI CACGTC 1 cut(s) 396
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 2 cut(s) 284, 347
Ama87I CYCGRG 1 cut(s) 659
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 564
ApeKI GCWGC 4 cut(s) 262, 296, 793, 827
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspS9I GGNCC 1 cut(s) 564
AsuHPI GGTGA 4 cut(s) 22, 136, 536, 894
AsuNHI GCTAGC 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 659
BanII GRGCYC 1 cut(s) 820
BauI CACGAG 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 820
BbvCI CCTCAGC 1 cut(s) 841
BbvI GCAGC 4 cut(s) 249, 283, 780, 839
BcoDI GTCTC 2 cut(s) 284, 347
BfaI CTAG 4 cut(s) 215, 417, 561, 731
BisI GCNGC 4 cut(s) 263, 297, 794, 828
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 4 cut(s) 264, 298, 795, 829
BmeT110I CYCGRG 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 564
BmiI GGNNCC 1 cut(s) 503
BmsI GCATC 2 cut(s) 598, 624
BmtI GCTAGC 1 cut(s) 420
BplI GAGNNNNNCTC 2 cut(s) 802, 834
Bpu10I CCTNAGC 1 cut(s) 841
Bpu1102I GCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 511
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 764
BseAI TCCGGA 1 cut(s) 244
BseGI GGATG 3 cut(s) 81, 593, 639
BseLI CCNNNNNNNGG 2 cut(s) 433, 511
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 1 cut(s) 855
BseNI ACTGG 1 cut(s) 505
BseXI GCAGC 4 cut(s) 249, 283, 780, 839
BshFI GGCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 2 cut(s) 245, 567
BslFI GGGAC 1 cut(s) 528
BslI CCNNNNNNNGG 2 cut(s) 433, 511
BsmAI GTCTC 2 cut(s) 284, 347
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 528
BsnI GGCC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 820
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 3 cut(s) 235, 271, 321
Bsp1720I GCTNAGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 566
BspCNI CTCAG 1 cut(s) 854
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 503
BspOI GCTAGC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 764
BsrI ACTGG 1 cut(s) 505
BssMI GATC 3 cut(s) 235, 271, 321
BssNI GRCGYC 1 cut(s) 741
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 519, 601, 685
Bst6I CTCTTC 3 cut(s) 15, 20, 46
BstACI GRCGYC 1 cut(s) 741
BstC8I GCNNGC 4 cut(s) 418, 422, 798, 832
BstDEI CTNAG 3 cut(s) 258, 801, 841
BstF5I GGATG 3 cut(s) 81, 593, 639
BstKTI GATC 3 cut(s) 238, 274, 324
BstMAI GTCTC 2 cut(s) 284, 347
BstMBI GATC 3 cut(s) 235, 271, 321
BstMWI GCNNNNNNNGC 2 cut(s) 464, 824
BstV1I GCAGC 4 cut(s) 249, 283, 780, 839
BsuRI GGCC 1 cut(s) 566
BtrI CACGTC 1 cut(s) 396
BtsCI GGATG 3 cut(s) 81, 593, 639
BtsIMutI CAGTG 2 cut(s) 554, 597
Cac8I GCNNGC 4 cut(s) 418, 422, 798, 832
Cfr13I GGNCC 1 cut(s) 564
CseI GACGC 2 cut(s) 302, 730
CviAII CATG 2 cut(s) 378, 723
DdeI CTNAG 3 cut(s) 258, 801, 841
DpnI GATC 3 cut(s) 237, 273, 323
DpnII GATC 3 cut(s) 235, 271, 321
Eam1104I CTCTTC 3 cut(s) 15, 20, 46
EarI CTCTTC 3 cut(s) 15, 20, 46
Ecl136II GAGCTC 1 cut(s) 818
Eco24I GRGCYC 1 cut(s) 820
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 2 cut(s) 638, 659
Eco88I CYCGRG 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 820
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 2 cut(s) 381, 726
FaiI YATR 7 cut(s) 379, 408, 512, 522, 724, 774, 848
FaqI GGGAC 1 cut(s) 528
FatI CATG 2 cut(s) 377, 722
Fnu4HI GCNGC 4 cut(s) 263, 297, 794, 828
FokI GGATG 3 cut(s) 68, 580, 646
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 4 cut(s) 263, 297, 794, 828
FspBI CTAG 4 cut(s) 215, 417, 561, 731
GluI GCNGC 4 cut(s) 263, 297, 794, 828
HaeIII GGCC 1 cut(s) 566
HapII CCGG 2 cut(s) 245, 567
HgaI GACGC 2 cut(s) 302, 730
Hin1I GRCGYC 1 cut(s) 741
Hin1II CATG 2 cut(s) 381, 726
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 4 cut(s) 167, 173, 440, 715
HpaII CCGG 2 cut(s) 245, 567
HphI GGTGA 4 cut(s) 22, 136, 536, 894
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 4 cut(s) 172, 203, 673, 872
Hpy188III TCNNGA 4 cut(s) 245, 281, 341, 712
Hpy8I GTNNAC 1 cut(s) 399
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 7 cut(s) 151, 163, 492, 521, 718, 877, 882
HpyCH4III ACNGT 3 cut(s) 519, 601, 685
HpyCH4IV ACGT 2 cut(s) 395, 401
HpyCH4V TGCA 8 cut(s) 377, 538, 548, 584, 611, 769, 776, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 824
HpyF3I CTNAG 3 cut(s) 258, 801, 841
HpySE526I ACGT 2 cut(s) 395, 401
Hsp92I GRCGYC 1 cut(s) 741
Hsp92II CATG 2 cut(s) 381, 726
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 235, 271, 321
LmnI GCTCC 2 cut(s) 429, 815
Lsp1109I GCAGC 4 cut(s) 249, 283, 780, 839
LweI GCATC 2 cut(s) 598, 624
MaeI CTAG 4 cut(s) 215, 417, 561, 731
MaeII ACGT 2 cut(s) 395, 401
MaeIII GTNAC 2 cut(s) 601, 900
MalI GATC 3 cut(s) 237, 273, 323
MboI GATC 3 cut(s) 235, 271, 321
MboII GAAGA 6 cut(s) 7, 33, 230, 266, 449, 507
MhlI GDGCHC 1 cut(s) 820
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 4 cut(s) 46, 135, 195, 226
MroI TCCGGA 1 cut(s) 244
MseI TTAA 2 cut(s) 102, 362
MspI CCGG 2 cut(s) 245, 567
MwoI GCNNNNNNNGC 2 cut(s) 464, 824
NdeII GATC 3 cut(s) 235, 271, 321
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 2 cut(s) 381, 726
NlaIV GGNNCC 1 cut(s) 503
NmuCI GTSAC 2 cut(s) 601, 900
PaeR7I CTCGAG 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 3 cut(s) 167, 440, 715
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 4 cut(s) 264, 298, 795, 829
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 820
PspN4I GGNNCC 1 cut(s) 503
PspPI GGNCC 1 cut(s) 564
PspXI VCTCGAGB 1 cut(s) 659
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 2 cut(s) 102, 362
SatI GCNGC 4 cut(s) 263, 297, 794, 828
Sau3AI GATC 3 cut(s) 235, 271, 321
Sau96I GGNCC 1 cut(s) 564
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 2 cut(s) 598, 624
Sfr274I CTCGAG 1 cut(s) 659
SlaI CTCGAG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 659, 735
SmoI CTYRAG 2 cut(s) 659, 735
SspMI CTAG 4 cut(s) 215, 417, 561, 731
SstI GAGCTC 1 cut(s) 820
TaaI ACNGT 3 cut(s) 519, 601, 685
TaiI ACGT 2 cut(s) 398, 404
TaqI TCGA 2 cut(s) 282, 660
TfiI GAWTC 3 cut(s) 167, 440, 715
Tru1I TTAA 2 cut(s) 102, 362
Tru9I TTAA 2 cut(s) 102, 362
TscAI CASTG 2 cut(s) 561, 604
TseFI GTSAC 2 cut(s) 601, 900
TseI GCWGC 4 cut(s) 262, 296, 793, 827
Tsp45I GTSAC 2 cut(s) 601, 900
TspDTI ATGAA 3 cut(s) 639, 711, 753
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 2 cut(s) 561, 604
Van91I CCANNNNNTGG 1 cut(s) 511
XhoI CTCGAG 1 cut(s) 659
XspI CTAG 4 cut(s) 215, 417, 561, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.