Rorug03G0017600

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016705
Physical Location & Seq
Reverse (-)
1362955 .. 1363536
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0017600.1

Sequence Viewer

Length: 387 bp
ATGCTTTGCAGGCGGAGCAATACCATGTGGACTCCGACTCCAGATCAGATAAGAATCCTCAATGAGCTTTTCTATAGCAAGGAAATTAGGTCCCCAACCGTAAAGCAGGTTCAGCAGATCTGTTTACAGTTGAGACGGTACGGACAGATCGAGGCCAAGAATGTCTTTTATTGGTTCCAGAACCACAAGGCTCGGGATAAACGGAAGAAGAAGATCACTTCGGATGTTCATGTGCCCATGCAAAGTGTGAGCCCCGGAAAAATCTATCGAGATAAGGAATTATGGAAATTCATTTTAAATAAAAAGAAATGCTCTGGCGTGATCTGGACCGTTAAAAGACCACCGCTTGATCAGCACCGTTCGTCTGAAATGAAACTCAGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c HisKA Response_reg

Protein Analysis

128

Amino Acids

15.45

Weight (kDa)

10.35

Isoelectric Point (pI)

67.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 10 - 68 2e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016705)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47430
malus_domestica MD04G1194300.v1.1
prunus_persica Prupe.6G314200_v2.0.a1
pyrus_communis pycom04g17180
rosa_chinensis RchiOBHm_Chr3g0456951
rosa_laevigata RLG00000025260
rosa_multiflora Rmu_sc0016008.1_g000003
rosa_roxburghii Rroxscaffold_6G00422340
rosa_rugosa Rorug03G0017600
rosa_samantha Rh3AG077600 Rh3BG079500 Rh3CG079400 Rh3DG081200
rosa_wichuraiana Rw3G006650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AciI CCGC 2 cut(s) 13, 344
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 140
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 127
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 90, 327
AsuC2I CCSGG 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 90, 327
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 254
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 127
BfmI CTRYAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 90, 327
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 90, 327
BmiI GGNNCC 2 cut(s) 92, 176
BmrFI CCNGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bse8I GATNNNNATC 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 237
BshFI GGCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 237, 254
Bsp143I GATC 6 cut(s) 43, 117, 147, 213, 321, 349
BspACI CCGC 2 cut(s) 13, 344
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 92, 176
BspMI ACCTGC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 6 cut(s) 43, 117, 147, 213, 321, 349
Bst4CI ACNGT 5 cut(s) 100, 129, 138, 331, 359
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 6 cut(s) 46, 120, 150, 216, 324, 352
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 6 cut(s) 43, 117, 147, 213, 321, 349
BstMWI GCNNNNNNNGC 4 cut(s) 10, 15, 112, 352
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 90, 327
Csp6I GTAC 1 cut(s) 139
CviAII CATG 3 cut(s) 25, 230, 238
CviJI RGCY 5 cut(s) 67, 155, 191, 252, 382
CviKI_1 RGCY 5 cut(s) 67, 155, 191, 252, 382
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 377
DpnI GATC 6 cut(s) 45, 119, 149, 215, 323, 351
DpnII GATC 6 cut(s) 43, 117, 147, 213, 321, 349
DraI TTTAAA 1 cut(s) 297
EciI GGCGGA 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 254
Eco47I GGWCC 2 cut(s) 90, 327
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 28, 233, 241
FaiI YATR 6 cut(s) 26, 75, 231, 239, 283, 385
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 24, 229, 237
FbaI TGATCA 1 cut(s) 349
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 254
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 255
Hin1II CATG 3 cut(s) 28, 233, 241
HinfI GANTC 3 cut(s) 31, 37, 54
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 30, 125
Hpy188I TCNGA 4 cut(s) 36, 48, 223, 367
Hpy188III TCNNGA 5 cut(s) 41, 178, 194, 269, 325
Hpy8I GTNNAC 2 cut(s) 30, 125
HpyCH4III ACNGT 5 cut(s) 100, 129, 138, 331, 359
HpyCH4V TGCA 2 cut(s) 9, 241
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 15, 112, 352
HpyF3I CTNAG 1 cut(s) 377
Hsp92II CATG 3 cut(s) 28, 233, 241
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 6 cut(s) 43, 117, 147, 213, 321, 349
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 7 cut(s) 54, 92, 191, 268, 300, 310, 364
MalI GATC 6 cut(s) 45, 119, 149, 215, 323, 351
MboI GATC 6 cut(s) 43, 117, 147, 213, 321, 349
MboII GAAGA 3 cut(s) 217, 220, 223
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 2 cut(s) 237, 254
MluCI AATT 3 cut(s) 84, 278, 287
MlyI GAGTC 2 cut(s) 25, 31
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 2 cut(s) 68, 145
MseI TTAA 2 cut(s) 296, 333
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 10, 15, 112, 352
NciI CCSGG 1 cut(s) 255
NdeII GATC 6 cut(s) 43, 117, 147, 213, 321, 349
NlaIII CATG 3 cut(s) 28, 233, 241
NlaIV GGNNCC 2 cut(s) 92, 176
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 54
PleI GAGTC 2 cut(s) 25, 31
PpsI GAGTC 2 cut(s) 25, 31
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 92, 176
PspPI GGNCC 2 cut(s) 90, 327
PspPPI RGGWCCY 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 2 cut(s) 296, 333
Sau3AI GATC 6 cut(s) 43, 117, 147, 213, 321, 349
Sau96I GGNCC 2 cut(s) 90, 327
SchI GAGTC 2 cut(s) 25, 31
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 237, 254
SetI ASST 3 cut(s) 69, 92, 111
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 2 cut(s) 90, 327
Sse9I AATT 3 cut(s) 84, 278, 287
SsiI CCGC 2 cut(s) 13, 344
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 5 cut(s) 100, 129, 138, 331, 359
TaqI TCGA 2 cut(s) 150, 268
TasI AATT 3 cut(s) 84, 278, 287
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 296, 333
Tru9I TTAA 2 cut(s) 296, 333
TspDTI ATGAA 3 cut(s) 218, 280, 386
TspGWI ACGGA 2 cut(s) 156, 217
VpaK11BI GGWCC 2 cut(s) 90, 327
XapI RAATTY 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.