Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012708

Physical Location & Seq

Genomic Coordinates Reverse (-)

4470462 .. 4474266

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGATCTCCCTGATTCGCCCCCGTCAAATCCCATGGATTCGCCCGTCTCCGGACTGCGTGTGAGGCATCACCGGGAACTTGAAAATTTAACACTTACGACGAGGCCGGTAAAGACATTAAAGTATTTCACTGTGGCAATTGGTCGGTATTTTAGGCAATTTATGGCAACTGGTGGTTCGTTTGTGCTGTTTATTATGCTAGCGGGAGGTCTAGGAATTGCTACTATGACAATTGGCGGACCACATGAAAAGCACATGCAGGAGCTTTTCCGTTATCTGCAATTTGGACTCTGGTGGCTGGCTCTTGGTGTGGCATCATCAATTGGTCTCGGATCTGGTTTGCACACATTTGTACTGTATTTGGGCCCTCATATAGCTCTGTTTACCATGAAAGCCGTGCAGTGTGGCAGAGTTGACTTAAAAATTGCCCCATATGATACCGTTCAATTGAAAACGGGTCCTTCATGGATGGATAGAAACTGCTCTGAATATGGTCCCCCACTATTTTCATCCCAGCAAGGTTCAAGGCTCCCACTTAGCAGCATACTGCCTCAGGTTCAGTTAGAGGCTATCCTGTGGGGAATTGGAACTGCACTGGGAGAGCTTCCTCCATTTTTCATATCAAGAGCTGCTCGTATAGCAGGGAGTGAATTGGAAGTAATGAAAGAATTGGATTCTTCTTCAACTGAAGATGGTGGAGTTGTAGCTAATCACGTGAACCGGATCAAACTATGGCTTCTTTCACATTCACAGTATCTGAACTTTTTAACGATATTAGTTCTTGCTTCAGTACCCAACCCTCTATTTGACCTTGCTGGTATAATGTGTGGACAATTTGGCATTCCATTTTGGACATTCTTTATCTCAACAATGATTGGAAAGGCATTTATCAAGACTCACATACAGACCATTTTCCTCATCTCAGTTTGCAACAATCAACTTCTTGACTTGGTAGAAAATAAATTGATTCGGTTGCTCAGCATTTTCCCTGGATTTGGTTTGATTGCGCCCAAACTGATTGCCAAACTACATATTTTGAAAGAGAAGTATATGGATGGCTCTCCTTCAGTTATCTCAAACAGCGAGGTGAAAAAGTGGAACTTCTCTATTGGTGCAATTTGGAATACTGTTGTGTGGCTCATGCTCATCAACTTTTTCATCAAGATTGTGTCAGCAACTGCACAAACCGTTCTCAAGGAAGAACATGAAAAGGAGTTGACTGCATTGACGAACAATGTAGGGGCATCAGATCTCGGCAAGGTTGTGTCAACAACTGCACAAAACGTTCTCAAGGAAGAGCAGAAAAAGGAGTTGACTGCAAAGCAACTGGCTGACGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

447

Amino Acids

49.49

Weight (kDa)

8.72

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51850 AT3G51850 AT3G51850
fragaria_vesca	FvH4_6g11340
malus_domestica	MD04G1154500.v1.1 MD12G1168200.v1.1
prunus_persica	Prupe.6G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462921
rosa_laevigata	RLG00000024823
rosa_multiflora	Rmu_sc0000766.1_g000018
rosa_roxburghii	Rroxscaffold_6G00417100
rosa_rugosa	Rorug03G0059800 Rorug03G0059900
rosa_samantha	Rh3AG118100 Rh3BG123000 Rh3CG124800 Rh3DG123500
rosa_wichuraiana	Rw3G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	2 cut(s)	203, 237
AclI	AACGTT	1 cut(s)	1284
AclWI	GGATC	3 cut(s)	12, 340, 731
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	3 cut(s)	708, 771, 1050
AcvI	CACGTG	1 cut(s)	715
AfaI	GTAC	2 cut(s)	354, 792
AfiI	CCNNNNNNNGG	2 cut(s)	50, 995
AgsI	TTSAA	6 cut(s)	83, 446, 451, 525, 684, 1039
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	5 cut(s)	265, 377, 604, 629, 707
AluI	AGCT	5 cut(s)	265, 377, 604, 629, 707
Alw26I	GTCTC	2 cut(s)	52, 332
AlwI	GGATC	3 cut(s)	12, 340, 731
AlwNI	CAGNNNCTG	2 cut(s)	757, 1178
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	104, 364
ApaI	GGGCCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	540, 629
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	62, 1099
AsuNHI	GCTAGC	1 cut(s)	199
AvaII	GGWCC	3 cut(s)	239, 458, 494
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	368
BbrPI	CACGTG	1 cut(s)	715
BbvI	GCAGC	2 cut(s)	552, 616
BccI	CCATC	3 cut(s)	463, 686, 1049
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	52, 332
BfaI	CTAG	2 cut(s)	200, 212
BglII	AGATCT	1 cut(s)	1249
BisI	GCNGC	2 cut(s)	541, 630
BlpI	GCTNAGC	1 cut(s)	977
BlsI	GCNGC	2 cut(s)	542, 631
Bme1390I	CCNGG	2 cut(s)	74, 990
Bme18I	GGWCC	3 cut(s)	239, 458, 494
BmgT120I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
BmiI	GGNNCC	4 cut(s)	366, 459, 496, 530
BmrFI	CCNGG	2 cut(s)	74, 990
BmrI	ACTGGG	1 cut(s)	605
BmsI	GCATC	3 cut(s)	76, 323, 1253
BmtI	GCTAGC	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	605
Bpu1102I	GCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	2 cut(s)	1178, 1274
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	33, 988
BsaWI	WCCGGW	2 cut(s)	50, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 995
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	3 cut(s)	175, 600, 1332
Bse21I	CCTNAGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	2 cut(s)	33, 988
BseGI	GGATG	3 cut(s)	474, 509, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	50, 995
BseMII	CTCAG	3 cut(s)	566, 936, 991
BseNI	ACTGG	3 cut(s)	175, 600, 1332
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	552, 616
BseYI	CCCAGC	1 cut(s)	513
BsgI	GTGCAG	4 cut(s)	419, 576, 1164, 1260
BshFI	GGCC	2 cut(s)	106, 366
BsiSI	CCGG	4 cut(s)	51, 73, 107, 721
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	50, 995
BsmAI	GTCTC	2 cut(s)	52, 332
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	840
BsnI	GGCC	2 cut(s)	106, 366
Bso31I	GGTCTC	1 cut(s)	332
Bsp120I	GGGCCC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp13I	TCCGGA	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	4, 332, 723, 1249
Bsp1720I	GCTNAGC	1 cut(s)	977
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	203, 237
BspANI	GGCC	2 cut(s)	106, 366
BspCNI	CTCAG	3 cut(s)	565, 935, 990
BspEI	TCCGGA	1 cut(s)	50
BspLI	GGNNCC	4 cut(s)	366, 459, 496, 530
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	3 cut(s)	12, 340, 731
BspQI	GCTCTTC	1 cut(s)	1290
BspTNI	GGTCTC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	175, 600, 1332
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	33, 988
BssMI	GATC	4 cut(s)	4, 332, 723, 1249
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	6 cut(s)	133, 357, 442, 753, 1129, 1189
Bst6I	CTCTTC	1 cut(s)	1290
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	201, 300
BstDEI	CTNAG	4 cut(s)	536, 552, 922, 977
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	474, 509, 1060
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	4 cut(s)	7, 335, 726, 1252
BstMAI	GTCTC	2 cut(s)	52, 332
BstMBI	GATC	4 cut(s)	4, 332, 723, 1249
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 638
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	72, 988
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	552, 616
BstX2I	RGATCY	3 cut(s)	4, 332, 1249
BstYI	RGATCY	3 cut(s)	4, 332, 1249
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	106, 366
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	474, 509, 1060
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	3 cut(s)	129, 407, 593
Cac8I	GCNNGC	2 cut(s)	201, 300
CaiI	CAGNNNCTG	2 cut(s)	757, 1178
CfoI	GCGC	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
Csp6I	GTAC	2 cut(s)	353, 791
CviAII	CATG	7 cut(s)	34, 245, 256, 388, 465, 1141, 1205
CviQI	GTAC	2 cut(s)	353, 791
DdeI	CTNAG	4 cut(s)	536, 552, 922, 977
DpnI	GATC	4 cut(s)	6, 334, 725, 1251
DpnII	GATC	4 cut(s)	4, 332, 723, 1249
Eam1104I	CTCTTC	1 cut(s)	1290
EarI	CTCTTC	1 cut(s)	1290
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	3 cut(s)	239, 458, 494
Eco57I	CTGAAG	3 cut(s)	708, 771, 1050
Eco72I	CACGTG	1 cut(s)	715
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	365, 458
EcoRII	CCWGG	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	7 cut(s)	37, 248, 259, 391, 468, 1144, 1208
FalI	AAGNNNNNCTT	2 cut(s)	1085, 1117
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	7 cut(s)	33, 244, 255, 387, 464, 1140, 1204
FauI	CCCGC	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	541, 630
FokI	GGATG	3 cut(s)	481, 496, 1067
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	541, 630
FspBI	CTAG	2 cut(s)	200, 212
GlaI	GCGC	1 cut(s)	1008
GluI	GCNGC	2 cut(s)	541, 630
GsaI	CCCAGC	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	106, 366
HapII	CCGG	4 cut(s)	51, 73, 107, 721
HhaI	GCGC	1 cut(s)	1009
Hin1II	CATG	7 cut(s)	37, 248, 259, 391, 468, 1144, 1208
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HincII	GTYRAC	4 cut(s)	415, 1218, 1269, 1314
HindII	GTYRAC	4 cut(s)	415, 1218, 1269, 1314
HinfI	GANTC	6 cut(s)	14, 38, 288, 674, 895, 967
HpaII	CCGG	4 cut(s)	51, 73, 107, 721
HphI	GGTGA	2 cut(s)	62, 1099
Hpy166II	GTNNAC	7 cut(s)	384, 415, 718, 830, 1218, 1269, 1314
Hpy188I	TCNGA	4 cut(s)	332, 487, 759, 1249
Hpy188III	TCNNGA	5 cut(s)	51, 624, 892, 944, 1162
Hpy8I	GTNNAC	7 cut(s)	384, 415, 718, 830, 1218, 1269, 1314
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	471, 1074
HpyCH4III	ACNGT	6 cut(s)	133, 357, 442, 753, 1129, 1189
HpyCH4IV	ACGT	2 cut(s)	714, 1284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 638
HpyF3I	CTNAG	4 cut(s)	536, 552, 922, 977
HpySE526I	ACGT	2 cut(s)	714, 1284
Hsp92II	CATG	7 cut(s)	37, 248, 259, 391, 468, 1144, 1208
HspAI	GCGC	1 cut(s)	1007
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	4, 332, 723, 1249
LguI	GCTCTTC	1 cut(s)	1290
LmnI	GCTCC	2 cut(s)	262, 534
Lsp1109I	GCAGC	2 cut(s)	552, 616
LweI	GCATC	3 cut(s)	76, 323, 1253
MaeI	CTAG	2 cut(s)	200, 212
MaeII	ACGT	2 cut(s)	714, 1284
MalI	GATC	4 cut(s)	6, 334, 725, 1251
MboI	GATC	4 cut(s)	4, 332, 723, 1249
MboII	GAAGA	5 cut(s)	669, 672, 701, 1211, 1307
MfeI	CAATTG	4 cut(s)	138, 231, 321, 446
MflI	RGATCY	3 cut(s)	4, 332, 1249
MhlI	GDGCHC	1 cut(s)	368
MlyI	GAGTC	2 cut(s)	282, 889
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	4 cut(s)	89, 119, 419, 767
MspI	CCGG	4 cut(s)	51, 73, 107, 721
MspR9I	CCNGG	2 cut(s)	74, 990
MunI	CAATTG	4 cut(s)	138, 231, 321, 446
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	2 cut(s)	64, 638
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	33
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	4 cut(s)	4, 332, 723, 1249
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	7 cut(s)	37, 248, 259, 391, 468, 1144, 1208
NlaIV	GGNNCC	4 cut(s)	366, 459, 496, 530
NmeAIII	GCCGAG	1 cut(s)	1233
NspI	RCATGY	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	1290
PctI	GAATGC	1 cut(s)	840
PfeI	GAWTC	4 cut(s)	14, 38, 674, 967
PkrI	GCNGC	2 cut(s)	542, 631
PleI	GAGTC	2 cut(s)	282, 889
PmaCI	CACGTG	1 cut(s)	715
PmlI	CACGTG	1 cut(s)	715
PpsI	GAGTC	2 cut(s)	282, 889
Ppu21I	YACGTR	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	1284
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	988
PspCI	CACGTG	1 cut(s)	715
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	4 cut(s)	366, 459, 496, 530
PspOMI	GGGCCC	1 cut(s)	364
PspPI	GGNCC	5 cut(s)	239, 364, 365, 458, 494
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	2 cut(s)	757, 1178
PsuI	RGATCY	3 cut(s)	4, 332, 1249
RsaI	GTAC	2 cut(s)	354, 792
RsaNI	GTAC	2 cut(s)	353, 791
SapI	GCTCTTC	1 cut(s)	1290
SaqAI	TTAA	4 cut(s)	89, 119, 419, 767
SatI	GCNGC	2 cut(s)	541, 630
Sau3AI	GATC	4 cut(s)	4, 332, 723, 1249
Sau96I	GGNCC	5 cut(s)	239, 364, 365, 458, 494
SchI	GAGTC	2 cut(s)	282, 889
ScrFI	CCNGG	2 cut(s)	74, 990
SduI	GDGCHC	1 cut(s)	368
SfaNI	GCATC	3 cut(s)	76, 323, 1253
SinI	GGWCC	3 cut(s)	239, 458, 494
SmlI	CTYRAG	2 cut(s)	1193, 1289
SmoI	CTYRAG	2 cut(s)	1193, 1289
SsiI	CCGC	2 cut(s)	203, 237
SspMI	CTAG	2 cut(s)	200, 212
StyD4I	CCNGG	2 cut(s)	72, 988
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	6 cut(s)	133, 357, 442, 753, 1129, 1189
TaiI	ACGT	2 cut(s)	717, 1287
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	4 cut(s)	14, 38, 674, 967
Tru1I	TTAA	4 cut(s)	89, 119, 419, 767
Tru9I	TTAA	4 cut(s)	89, 119, 419, 767
TscAI	CASTG	3 cut(s)	136, 407, 600
TseI	GCWGC	2 cut(s)	540, 629
TspDTI	ATGAA	8 cut(s)	261, 404, 453, 498, 607, 677, 1147, 1221
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	136, 407, 600
VpaK11BI	GGWCC	3 cut(s)	239, 458, 494
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	2 cut(s)	200, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.