Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012708

Physical Location & Seq

Genomic Coordinates Reverse (-)

4482558 .. 4482986

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAGGCAGATAAGCAACATAAATCGACATATAAACTACTCCTTGACTTGTTTGAAGGAGGTCAATATCTTACTGTTCAACCAAAGCCTCTCCCACACAACAACCTCATATTTCACAGCCGAGGATTTATCCTTGACCGCAATGACGAGCCGGAAGTTTTCCCCGGCGACCACCTGAGTCTCGCCTTTGACGACGCTCTGGAACACCAACTTGTTCTTAGATTTCTTGTTGTACTCCGACACTGCGAACTCCGCGATCTCCTACATGTCGGGGTAGTTGATGTTCTTGATCGGCTTCCAACCACCGAGCGCAGGGCTGTCTGGGGTGGCGGCGGAGAGAGAGAAGAAGAGGGCCAGGATTGTGACGAGGAGGAGACACATGGTGACTGCTGTAGACACAAGAAATTTAATGAAAATAAAATTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

142

Amino Acids

16.43

Weight (kDa)

5.51

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51850 AT3G51850 AT3G51850
fragaria_vesca	FvH4_6g11340
malus_domestica	MD04G1154500.v1.1 MD12G1168200.v1.1
prunus_persica	Prupe.6G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462921
rosa_laevigata	RLG00000024823
rosa_multiflora	Rmu_sc0000766.1_g000018
rosa_roxburghii	Rroxscaffold_6G00417100
rosa_rugosa	Rorug03G0059800 Rorug03G0059900
rosa_samantha	Rh3AG118100 Rh3BG123000 Rh3CG124800 Rh3DG123500
rosa_wichuraiana	Rw3G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	1 cut(s)	255
AciI	CCGC	4 cut(s)	139, 253, 330, 333
AcsI	RAATTY	2 cut(s)	404, 420
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	56, 80
AjnI	CCWGG	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	185, 368
AoxI	GGCC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	404, 420
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	185, 368
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	165, 356
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	165, 356
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	121, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	121, 163
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	383, 386
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	152, 165
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	185, 368
BsnI	GGCC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	256, 289
BspACI	CCGC	4 cut(s)	139, 253, 330, 333
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	121, 163
BssMI	GATC	2 cut(s)	256, 289
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	176, 218
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	2 cut(s)	259, 292
BstMAI	GTCTC	2 cut(s)	185, 368
BstMBI	GATC	2 cut(s)	256, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	163, 354
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	354
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	2 cut(s)	266, 380
CviJI	RGCY	6 cut(s)	88, 120, 151, 295, 317, 354
CviKI_1	RGCY	6 cut(s)	88, 120, 151, 295, 317, 354
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	176, 218
DpnI	GATC	2 cut(s)	258, 291
DpnII	GATC	2 cut(s)	256, 289
DraIII	CACNNNGTG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	269, 383
FaiI	YATR	6 cut(s)	21, 31, 33, 110, 267, 381
FatI	CATG	2 cut(s)	265, 379
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	331
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	152, 165
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	2 cut(s)	269, 383
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	2 cut(s)	152, 165
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	200, 287
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	176, 218
Hsp92II	CATG	2 cut(s)	269, 383
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	256, 289
LpnPI	CCDG	8 cut(s)	165, 178, 185, 188, 298, 307, 341, 368
MaeIII	GTNAC	2 cut(s)	362, 383
MalI	GATC	2 cut(s)	258, 291
MboI	GATC	2 cut(s)	256, 289
MboII	GAAGA	2 cut(s)	356, 359
MluCI	AATT	2 cut(s)	404, 420
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	2 cut(s)	262, 323
MnlI	CCTC	7 cut(s)	53, 99, 116, 116, 343, 361, 364
MseI	TTAA	2 cut(s)	408, 427
MspI	CCGG	2 cut(s)	152, 165
MspR9I	CCNGG	2 cut(s)	165, 356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	256, 289
NlaIII	CATG	2 cut(s)	269, 383
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	362, 383
NspI	RCATGY	1 cut(s)	269
PciI	ACATGT	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PscI	ACATGT	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	352
PsrI	GAACNNNNNNTAC	2 cut(s)	267, 299
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	408, 427
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	2 cut(s)	256, 289
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	165, 356
SetI	ASST	3 cut(s)	64, 108, 177
SfcI	CTRYAG	1 cut(s)	391
Sse9I	AATT	2 cut(s)	404, 420
SsiI	CCGC	4 cut(s)	139, 253, 330, 333
StyD4I	CCNGG	2 cut(s)	163, 354
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	404, 420
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	2 cut(s)	408, 427
Tru9I	TTAA	2 cut(s)	408, 427
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	362, 383
Tsp45I	GTSAC	2 cut(s)	362, 383
TspDTI	ATGAA	3 cut(s)	17, 413, 426
TspRI	CASTG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	404, 420
XceI	RCATGY	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.