Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009361

Physical Location & Seq

Genomic Coordinates Forward (+)

4896698 .. 4898408

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCCAACAAGATTCAAGCGTGCAGGAACCACAGATGGGTGAGAATAAGGAGGAGCAGAGTCTCAAGTATTTGGGATTTGTTCAAAACGCCGCCGTTGCATCCGGGGCTTGCGTCACGAAAGTGTACGGTTATGCGAAGGAGAGGTCTGGTCCTTTGAAGAATGGGGTTGAGTGTGTGGAGGGGAAGGTGAAGACTGTTGTTGGACCGGTTTATGACAAGTACCAGGAAGCCCCGGCCCAAATTCTCACCTTTGTTGATCGCAAGGTTGATGAATCTGTGACCAAGGCTGCCAAGCTAGATGTGCGTCCAGTGATCAGGCAGGCCTCATCCAAAGCCTTATCAGTTGCTCAAAAGGCACCAGAGACGGCTTGTACAGCTGCTAAATCTGTCTACACCAAGTATGAACCAAAAGCTGAGGAATGCGCTGCTTCTGCATGGCGAAAGCTGAATGAACTCCCCGTCTTCCCAAAGGTGGCTGGGGTAGTTGTACCAGCTGCGGCATATTGTTCTGAGAAGTACAATGAGACTGTGCAACACACTGCCGGGAAGGGGTACAGGGTTGCGTCATATATGCCTTTGGTTCCCACAGAGAGAATTGCCAAGGTCTTCGGAGAGAAGGTGCCTGAACCAGAGCCATTGATCGCAGCAACTCATGGGGAGACTGATATTGCTGTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0033036 GO:0034613 GO:0042886 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2

Protein Analysis

227

Amino Acids

24.51

Weight (kDa)

8.15

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	17 - 130	5.3e-39	Rubber elongation factor protein (REF)
REF	PF05755	125 - 205	1.3e-30	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09030
fragaria_vesca	FvH4_6g11860
malus_domestica	MD04G1148400.v1.1 MD12G1162000.v1.1
prunus_persica	Prupe.6G272700_v2.0.a1
pyrus_communis	pycom12g15380
rosa_chinensis	RchiOBHm_Chr3g0463601
rosa_laevigata	RLG00000024769
rosa_multiflora	Rmu_sc0003267.1_g000022 Rmu_sc0012012.1_g000004 Rmu_sc0019822.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416400
rosa_rugosa	Rorug03G0066200 Rorug03G0066300 Rorug03G0066400 Rorug03G0066400 Rorug03G0066500
rosa_samantha	Rh3AG123300 Rh3BG128200 Rh3CG130000 Rh3DG128800
rosa_wichuraiana	Rw3G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	358, 622
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	2 cut(s)	93, 500
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	6 cut(s)	128, 224, 376, 492, 521, 557
AfiI	CCNNNNNNNGG	3 cut(s)	38, 475, 552
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	4 cut(s)	18, 86, 160, 680
AjnI	CCWGG	1 cut(s)	225
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	5 cut(s)	298, 380, 416, 448, 497
AluI	AGCT	5 cut(s)	298, 380, 416, 448, 497
Alw26I	GTCTC	4 cut(s)	68, 359, 521, 656
AoxI	GGCC	3 cut(s)	3, 237, 324
ApeKI	GCWGC	5 cut(s)	290, 380, 428, 497, 647
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	4 cut(s)	4, 152, 206, 238
AsuC2I	CCSGG	3 cut(s)	106, 236, 547
AsuHPI	GGTGA	3 cut(s)	53, 202, 241
AvaII	GGWCC	2 cut(s)	152, 206
BanI	GGYRCC	2 cut(s)	358, 622
BbsI	GAAGAC	3 cut(s)	200, 457, 601
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	5 cut(s)	277, 367, 415, 484, 659
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	80, 384
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	3 cut(s)	106, 236, 547
BcoDI	GTCTC	4 cut(s)	68, 359, 521, 656
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
BlsI	GCNGC	7 cut(s)	94, 292, 382, 430, 499, 502, 649
Bme1390I	CCNGG	4 cut(s)	106, 227, 236, 547
Bme18I	GGWCC	2 cut(s)	152, 206
BmgT120I	GGNCC	4 cut(s)	4, 152, 206, 238
BmiI	GGNNCC	4 cut(s)	30, 360, 585, 624
BmrFI	CCNGG	4 cut(s)	106, 227, 236, 547
BmsI	GCATC	1 cut(s)	110
BpiI	GAAGAC	3 cut(s)	200, 457, 601
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	3 cut(s)	106, 236, 547
BsaJI	CCNNGG	4 cut(s)	105, 234, 285, 603
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 475, 552
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	105, 234, 285, 603
BseGI	GGATG	2 cut(s)	101, 329
BseLI	CCNNNNNNNGG	3 cut(s)	38, 475, 552
BseMII	CTCAG	2 cut(s)	408, 504
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	5 cut(s)	277, 367, 415, 484, 659
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	5, 239, 326
BshNI	GGYRCC	2 cut(s)	358, 622
BshTI	ACCGGT	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	105, 209, 236, 546
BslI	CCNNNNNNNGG	3 cut(s)	38, 475, 552
BsmAI	GTCTC	4 cut(s)	68, 359, 521, 656
BsmBI	CGTCTC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	5, 239, 326
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	259, 315, 642
BspACI	CCGC	2 cut(s)	93, 500
BspANI	GGCC	3 cut(s)	5, 239, 326
BspCNI	CTCAG	2 cut(s)	409, 505
BspLI	GGNNCC	4 cut(s)	30, 360, 585, 624
BspT107I	GGYRCC	2 cut(s)	358, 622
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	105, 234, 285, 603
BssMI	GATC	3 cut(s)	259, 315, 642
BssT1I	CCWWGG	2 cut(s)	285, 603
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	3 cut(s)	131, 199, 532
BstAUI	TGTACA	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	23, 112, 324
BstDEI	CTNAG	2 cut(s)	417, 513
BstF5I	GGATG	2 cut(s)	101, 329
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	3 cut(s)	262, 318, 645
BstMAI	GTCTC	4 cut(s)	68, 359, 521, 656
BstMBI	GATC	3 cut(s)	259, 315, 642
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 107, 304, 356, 377, 434
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	4 cut(s)	104, 225, 234, 545
BstV1I	GCAGC	5 cut(s)	277, 367, 415, 484, 659
BstV2I	GAAGAC	3 cut(s)	200, 457, 601
BsuRI	GGCC	3 cut(s)	5, 239, 326
BtsCI	GGATG	2 cut(s)	101, 329
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	318, 540
Cac8I	GCNNGC	3 cut(s)	23, 112, 324
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	4, 152, 206, 238
CseI	GACGC	3 cut(s)	103, 296, 555
Csp6I	GTAC	6 cut(s)	127, 223, 375, 491, 520, 556
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	438, 656
CviQI	GTAC	6 cut(s)	127, 223, 375, 491, 520, 556
DdeI	CTNAG	2 cut(s)	417, 513
DpnI	GATC	3 cut(s)	261, 317, 644
DpnII	GATC	3 cut(s)	259, 315, 642
Eco130I	CCWWGG	2 cut(s)	285, 603
Eco147I	AGGCCT	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	152, 206
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	285, 603
ErhI	CCWWGG	2 cut(s)	285, 603
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	441, 659
FaiI	YATR	9 cut(s)	135, 216, 405, 439, 505, 571, 573, 575, 657
FatI	CATG	2 cut(s)	437, 655
FbaI	TGATCA	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
FokI	GGATG	2 cut(s)	88, 316
Fsp4HI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
GsaI	CCCAGC	1 cut(s)	483
HaeIII	GGCC	3 cut(s)	5, 239, 326
HapII	CCGG	4 cut(s)	105, 209, 236, 546
HgaI	GACGC	3 cut(s)	103, 296, 555
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	441, 659
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	14, 61, 275
HpaII	CCGG	4 cut(s)	105, 209, 236, 546
HphI	GGTGA	3 cut(s)	53, 202, 241
Hpy166II	GTNNAC	2 cut(s)	127, 394
Hpy188I	TCNGA	2 cut(s)	514, 614
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	2 cut(s)	127, 394
HpyAV	CCTTC	4 cut(s)	133, 181, 544, 613
HpyCH4III	ACNGT	3 cut(s)	131, 199, 532
HpyCH4V	TGCA	4 cut(s)	25, 101, 437, 535
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 107, 304, 356, 377, 434
HpyF3I	CTNAG	2 cut(s)	417, 513
Hsp92II	CATG	2 cut(s)	441, 659
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	259, 315, 642
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	5 cut(s)	277, 367, 415, 484, 659
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	115, 280
MalI	GATC	3 cut(s)	261, 317, 644
MboI	GATC	3 cut(s)	259, 315, 642
MboII	GAAGA	4 cut(s)	172, 205, 457, 601
MluCI	AATT	2 cut(s)	243, 597
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	46, 138, 175, 337, 412
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	380, 497
MspI	CCGG	4 cut(s)	105, 209, 236, 546
MspR9I	CCNGG	4 cut(s)	106, 227, 236, 547
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	6 cut(s)	98, 107, 304, 356, 377, 434
NciI	CCSGG	3 cut(s)	106, 236, 547
NdeII	GATC	3 cut(s)	259, 315, 642
NlaIII	CATG	2 cut(s)	441, 659
NlaIV	GGNNCC	4 cut(s)	30, 360, 585, 624
NmuCI	GTSAC	2 cut(s)	115, 280
OliI	CACNNNNGTG	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	326
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	14, 275
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	7 cut(s)	94, 292, 382, 430, 499, 502, 649
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	4 cut(s)	30, 360, 585, 624
PspPI	GGNCC	4 cut(s)	4, 152, 206, 238
PvuII	CAGCTG	2 cut(s)	380, 497
RsaI	GTAC	6 cut(s)	128, 224, 376, 492, 521, 557
RsaNI	GTAC	6 cut(s)	127, 223, 375, 491, 520, 556
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	7 cut(s)	93, 291, 381, 429, 498, 501, 648
Sau3AI	GATC	3 cut(s)	259, 315, 642
Sau96I	GGNCC	4 cut(s)	4, 152, 206, 238
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	4 cut(s)	106, 227, 236, 547
SfaNI	GCATC	1 cut(s)	110
SinI	GGWCC	2 cut(s)	152, 206
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	243, 597
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	2 cut(s)	93, 500
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	4 cut(s)	104, 225, 234, 545
StyI	CCWWGG	2 cut(s)	285, 603
TaaI	ACNGT	3 cut(s)	131, 199, 532
TasI	AATT	2 cut(s)	243, 597
TatI	WGTACW	2 cut(s)	374, 519
TauI	GCSGC	2 cut(s)	95, 503
TfiI	GAWTC	2 cut(s)	14, 275
TscAI	CASTG	2 cut(s)	318, 547
TseFI	GTSAC	2 cut(s)	115, 280
TseI	GCWGC	5 cut(s)	290, 380, 428, 497, 647
Tsp45I	GTSAC	2 cut(s)	115, 280
TspDTI	ATGAA	3 cut(s)	288, 420, 468
TspRI	CASTG	2 cut(s)	318, 547
VpaK11BI	GGWCC	2 cut(s)	152, 206
XapI	RAATTY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.