Rorug03G0074000

Domain of unknown function (DUF1929)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017541
Physical Location & Seq
Reverse (-)
5845320 .. 5848613
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0074000.1

Sequence Viewer

Length: 1089 bp
ATGAGCTCAAAGACTCTATTCGCTATCGGAGCCCTAGCAGCTCTGCTGTTTGTGTCATCGGTTTTCGCAGACGACGTCGTCGTGTTGACGGAGGACAACTTCGAGAAGGAGGTCGGTCAAGATCGCCCTGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGACATTGTAAGAAGCTTGCCCCAGAGTATGAGAAGCTTGCCGCAAGTTTCAAGAAAGCAAAGTCTGTTTTGATCGGAAAGGTGGACTGTGATGAGCACAAGAGTGTTTGTGGCAAGTTTGGAGTTTCTGGTTACCCCACAATCCAATGGTTCCCAAAAGGGTCCCTAGAACCCAAAAAGTATGAAGGTGCCCGTACTTCAGAAGCTCTTGTTGAGTATGTGAATAAGGAAGCAGGGACCAATGTGAAGATAGCTGCAATCCCATCCAGTGTTGTGGTGCTTACACAGGATAATTTTGATGATGTTGTCCTGGACAAAACAAAAGATGTACTGGTGGAGTTCTATGCACCATGGTGCGGACATTGCAAATCCCTTGCTCCTACTTATGAGAAGGTTGCAGCAGCATTTAAGTTTGATGGAGATGTAGTGATTGCTAATGTTGATGCTGACAAATACAAGGAGATAGCTGAGAAGTATGGAGTGAGTGGATATCCTACATTGAAATTTTTCCCAAGGGGCAACAAGGATGGTGAAGAGTATGGTGGAGGCAGAGATTTAGAAGATTTTGTAAATTTCATCAATGAGAAATGTGGGACTAGCAGAGACGCGAAAGGGCAACTCACTTCCAAAGCTGGAATAGTCGCACATTTGGACGAATTAGTGAAGGAGTTCGTGAAAGCTGGCAGTGAGGAGAAGAAGGCCATCGTTTCCAAGATCGAAGAGGAAGTTGGAAAGCTCGAGGGTTCTGCTGCAAGATATGGTAAGATCTACGTGAATGCTGCCAAGAAGTCTTTGGCAAAAGGTGGTGACTACGCCAAGAATGAAATTCAGCGGCTTGAACGCATTCTCGAAAAGTCTGTCAACCCGACAAAGGCTGATGAGTTCACTCTCAAGAAGAACGTTCTATACACCTTCGCTTCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

362

Amino Acids

39.68

Weight (kDa)

6.22

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 26 - 128 9.9e-34 Thioredoxin
Thioredoxin_2 PF13098 39 - 125 1.2e-06 Thioredoxin-like domain
OST3_OST6 PF04756 53 - 138 3.5e-08 OST3 / OST6 family, transporter family
Thioredoxin PF00085 144 - 247 7.3e-33 Thioredoxin
OST3_OST6 PF04756 144 - 251 5.3e-06 OST3 / OST6 family, transporter family
Thioredoxin_2 PF13098 159 - 242 8.4e-06 Thioredoxin-like domain
ERp29 PF07749 265 - 358 1.8e-24 Endoplasmic reticulum protein ERp29, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017541)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53950
fragaria_vesca FvH4_6g12780
malus_domestica MD04G1138400.v1.1
prunus_persica Prupe.6G264000_v2.0.a1
pyrus_communis pycom04g12650
rosa_chinensis RchiOBHm_Chr3g0464771
rosa_laevigata RLG00000024673
rosa_multiflora Rmu_sc0007114.1_g000012
rosa_roxburghii Rroxscaffold_6G00415430
rosa_rugosa Rorug03G0074000
rosa_samantha Rh3BG136500
rosa_wichuraiana Rw3G011170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 767
AciI CCGC 3 cut(s) 201, 516, 991
AclI AACGTT 1 cut(s) 1059
AcsI RAATTY 3 cut(s) 662, 730, 984
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 355, 489
AfiI CCNNNNNNNGG 3 cut(s) 158, 515, 1030
AgsI TTSAA 3 cut(s) 211, 661, 998
AjnI CCWGG 2 cut(s) 152, 468
AjuI GAANNNNNNNTTGG 2 cut(s) 870, 902
AleI CACNNNNGTG 2 cut(s) 261, 511
Alw21I GWGCWC 2 cut(s) 8, 258
Alw26I GTCTC 1 cut(s) 756
Ama87I CYCGRG 1 cut(s) 896
AoxI GGCC 1 cut(s) 858
ApeKI GCWGC 6 cut(s) 38, 413, 557, 560, 908, 938
ApoI RAATTY 3 cut(s) 662, 730, 984
ArsI GACNNNNNNTTYG 2 cut(s) 1002, 1034
Asp700I GAANNNNTTC 3 cut(s) 665, 827, 1002
AspS9I GGNCC 2 cut(s) 321, 396
AsuHPI GGTGA 2 cut(s) 701, 977
AvaI CYCGRG 1 cut(s) 896
AvaII GGWCC 2 cut(s) 321, 396
BaeGI GKGCMC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 2 cut(s) 8, 34
Bbv12I GWGCWC 2 cut(s) 8, 258
BbvI GCAGC 6 cut(s) 50, 400, 569, 572, 895, 925
BccI CCATC 4 cut(s) 430, 569, 680, 869
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 2 cut(s) 154, 470
BcoDI GTCTC 1 cut(s) 756
BfaI CTAG 3 cut(s) 35, 326, 756
BglII AGATCT 1 cut(s) 924
BisI GCNGC 8 cut(s) 39, 201, 414, 558, 561, 909, 939, 992
BlsI GCNGC 8 cut(s) 40, 202, 415, 559, 562, 910, 940, 993
Bme1390I CCNGG 2 cut(s) 154, 470
Bme18I GGWCC 2 cut(s) 321, 396
BmeT110I CYCGRG 1 cut(s) 896
BmgT120I GGNCC 2 cut(s) 321, 396
BmiI GGNNCC 6 cut(s) 31, 311, 322, 323, 349, 397
BmrFI CCNGG 2 cut(s) 154, 470
BmsI GCATC 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 1034
BsaAI YACGTR 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 152, 509, 671
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 515, 1030
Bse1I ACTGG 2 cut(s) 426, 495
Bse3DI GCAATG 1 cut(s) 520
BseBI CCWGG 2 cut(s) 154, 470
BseDI CCNNGG 3 cut(s) 152, 509, 671
BseGI GGATG 2 cut(s) 422, 691
BseLI CCNNNNNNNGG 3 cut(s) 158, 515, 1030
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 2 cut(s) 426, 495
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 6 cut(s) 50, 400, 569, 572, 895, 925
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 1 cut(s) 860
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 2 cut(s) 8, 258
BsiHKCI CYCGRG 1 cut(s) 896
BslFI GGGAC 3 cut(s) 307, 409, 766
BslI CCNNNNNNNGG 3 cut(s) 158, 515, 1030
BsmAI GTCTC 1 cut(s) 756
BsmBI CGTCTC 1 cut(s) 756
BsmFI GGGAC 3 cut(s) 307, 409, 766
BsmI GAATGC 2 cut(s) 940, 1002
BsnI GGCC 1 cut(s) 860
BsoBI CYCGRG 1 cut(s) 896
Bsp1286I GDGCHC 4 cut(s) 8, 34, 258, 352
Bsp143I GATC 4 cut(s) 121, 231, 873, 924
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 3 cut(s) 201, 516, 991
BspANI GGCC 1 cut(s) 860
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 1 cut(s) 767
BspHI TCATGA 1 cut(s) 1085
BspLI GGNNCC 6 cut(s) 31, 311, 322, 323, 349, 397
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 520
BsrI ACTGG 2 cut(s) 426, 495
BssECI CCNNGG 3 cut(s) 152, 509, 671
BssMI GATC 4 cut(s) 121, 231, 873, 924
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 509, 671
Bst2UI CCWGG 2 cut(s) 154, 470
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 687, 873
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 931
BstC8I GCNNGC 3 cut(s) 177, 198, 841
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 509
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 2 cut(s) 422, 691
BstFNI CGCG 1 cut(s) 767
BstKTI GATC 4 cut(s) 124, 234, 876, 927
BstMAI GTCTC 1 cut(s) 756
BstMBI GATC 4 cut(s) 121, 231, 873, 924
BstMWI GCNNNNNNNGC 3 cut(s) 29, 38, 522
BstNI CCWGG 2 cut(s) 154, 470
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 152, 468
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 6 cut(s) 50, 400, 569, 572, 895, 925
BstX2I RGATCY 1 cut(s) 924
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 924
BsuRI GGCC 1 cut(s) 860
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 422, 691
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 2 cut(s) 433, 850
Cac8I GCNNGC 3 cut(s) 177, 198, 841
CciI TCATGA 1 cut(s) 1085
Cfr13I GGNCC 2 cut(s) 321, 396
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 354, 488
CviAII CATG 2 cut(s) 510, 1086
CviQI GTAC 2 cut(s) 354, 488
DdeI CTNAG 1 cut(s) 627
DpnI GATC 4 cut(s) 123, 233, 875, 926
DpnII GATC 4 cut(s) 121, 231, 873, 924
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 687, 873
EarI CTCTTC 2 cut(s) 687, 873
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 509, 671
Eco24I GRGCYC 2 cut(s) 8, 34
Eco32I GATATC 1 cut(s) 650
Eco47I GGWCC 2 cut(s) 321, 396
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 1 cut(s) 896
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 321
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 152, 468
EcoRV GATATC 1 cut(s) 650
EcoT14I CCWWGG 2 cut(s) 509, 671
EcoT38I GRGCYC 2 cut(s) 8, 34
ErhI CCWWGG 2 cut(s) 509, 671
Esp3I CGTCTC 1 cut(s) 756
FaeI CATG 2 cut(s) 513, 1089
FaqI GGGAC 3 cut(s) 307, 409, 766
FatI CATG 2 cut(s) 509, 1085
Fnu4HI GCNGC 8 cut(s) 39, 201, 414, 558, 561, 909, 939, 992
FokI GGATG 2 cut(s) 409, 698
FriOI GRGCYC 2 cut(s) 8, 34
Fsp4HI GCNGC 8 cut(s) 39, 201, 414, 558, 561, 909, 939, 992
FspBI CTAG 3 cut(s) 35, 326, 756
GluI GCNGC 8 cut(s) 39, 201, 414, 558, 561, 909, 939, 992
HaeIII GGCC 1 cut(s) 860
HgaI GACGC 1 cut(s) 773
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 513, 1089
HincII GTYRAC 2 cut(s) 87, 1021
HindII GTYRAC 2 cut(s) 87, 1021
HindIII AAGCTT 2 cut(s) 173, 194
HinfI GANTC 1 cut(s) 13
HphI GGTGA 2 cut(s) 701, 977
Hpy166II GTNNAC 5 cut(s) 87, 161, 244, 1021, 1044
Hpy188I TCNGA 3 cut(s) 29, 236, 361
Hpy188III TCNNGA 7 cut(s) 103, 119, 211, 832, 1007, 1051, 1086
Hpy8I GTNNAC 5 cut(s) 87, 161, 244, 1021, 1044
Hpy99I CGWCG 4 cut(s) 77, 80, 83, 140
HpyAV CCTTC 6 cut(s) 100, 338, 544, 817, 850, 1081
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 3 cut(s) 75, 930, 1059
HpyCH4V TGCA 5 cut(s) 416, 506, 525, 557, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 38, 522
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 3 cut(s) 75, 930, 1059
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 513, 1089
KflI GGGWCCC 1 cut(s) 321
Kzo9I GATC 4 cut(s) 121, 231, 873, 924
LmnI GCTCC 3 cut(s) 29, 154, 541
Lsp1109I GCAGC 6 cut(s) 50, 400, 569, 572, 895, 925
LweI GCATC 1 cut(s) 592
MaeI CTAG 3 cut(s) 35, 326, 756
MaeII ACGT 3 cut(s) 75, 930, 1059
MaeIII GTNAC 2 cut(s) 290, 965
MalI GATC 4 cut(s) 123, 233, 875, 926
MboI GATC 4 cut(s) 121, 231, 873, 924
MboII GAAGA 7 cut(s) 418, 704, 731, 865, 890, 1066, 1074
MflI RGATCY 1 cut(s) 924
MhlI GDGCHC 4 cut(s) 8, 34, 258, 352
MluCI AATT 5 cut(s) 451, 662, 730, 815, 984
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 1 cut(s) 868
MnlI CCTC 6 cut(s) 85, 103, 698, 841, 874, 892
MroXI GAANNNNTTC 3 cut(s) 665, 827, 1002
MseI TTAA 1 cut(s) 567
MslI CAYNNNNRTG 3 cut(s) 261, 511, 1084
MspA1I CMGCKG 1 cut(s) 991
MspR9I CCNGG 2 cut(s) 154, 470
Mva1269I GAATGC 2 cut(s) 940, 1002
MvaI CCWGG 2 cut(s) 154, 470
MvnI CGCG 1 cut(s) 767
MwoI GCNNNNNNNGC 3 cut(s) 29, 38, 522
NcoI CCATGG 1 cut(s) 509
NdeII GATC 4 cut(s) 121, 231, 873, 924
NlaIII CATG 2 cut(s) 513, 1089
NlaIV GGNNCC 6 cut(s) 31, 311, 322, 323, 349, 397
NmuCI GTSAC 1 cut(s) 965
OliI CACNNNNGTG 2 cut(s) 261, 511
PaeR7I CTCGAG 1 cut(s) 896
PagI TCATGA 1 cut(s) 1085
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 78
PctI GAATGC 2 cut(s) 940, 1002
PdmI GAANNNNTTC 3 cut(s) 665, 827, 1002
PflFI GACNNNGTC 2 cut(s) 74, 77
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 8 cut(s) 40, 202, 415, 559, 562, 910, 940, 993
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 931
PpuMI RGGWCCY 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 152, 468
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 2 cut(s) 152, 468
PspN4I GGNNCC 6 cut(s) 31, 311, 322, 323, 349, 397
PspPI GGNCC 2 cut(s) 321, 396
PspPPI RGGWCCY 1 cut(s) 321
PspXI VCTCGAGB 1 cut(s) 896
PsrI GAACNNNNNNTAC 2 cut(s) 1049, 1081
PsuI RGATCY 1 cut(s) 924
PsyI GACNNNGTC 2 cut(s) 74, 77
RsaI GTAC 2 cut(s) 355, 489
RsaNI GTAC 2 cut(s) 354, 488
RseI CAYNNNNRTG 3 cut(s) 261, 511, 1084
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 8 cut(s) 39, 201, 414, 558, 561, 909, 939, 992
Sau3AI GATC 4 cut(s) 121, 231, 873, 924
Sau96I GGNCC 2 cut(s) 321, 396
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 154, 470
SduI GDGCHC 4 cut(s) 8, 34, 258, 352
SfaNI GCATC 1 cut(s) 592
Sfr274I CTCGAG 1 cut(s) 896
SinI GGWCC 2 cut(s) 321, 396
SlaI CTCGAG 1 cut(s) 896
SmiMI CAYNNNNRTG 3 cut(s) 261, 511, 1084
SmlI CTYRAG 2 cut(s) 896, 1049
SmoI CTYRAG 2 cut(s) 896, 1049
Sse9I AATT 5 cut(s) 451, 662, 730, 815, 984
SsiI CCGC 3 cut(s) 201, 516, 991
SspMI CTAG 3 cut(s) 35, 326, 756
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 152, 468
StyI CCWWGG 2 cut(s) 509, 671
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 3 cut(s) 78, 933, 1062
TaqI TCGA 5 cut(s) 102, 138, 876, 897, 1008
TaqII GACCGA 1 cut(s) 104
TasI AATT 5 cut(s) 451, 662, 730, 815, 984
TatI WGTACW 1 cut(s) 487
TauI GCSGC 2 cut(s) 203, 994
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 2 cut(s) 433, 850
TseFI GTSAC 1 cut(s) 965
TseI GCWGC 6 cut(s) 38, 413, 557, 560, 908, 938
Tsp45I GTSAC 1 cut(s) 965
TspDTI ATGAA 5 cut(s) 357, 724, 996, 1068, 1074
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 2 cut(s) 433, 850
Tth111I GACNNNGTC 2 cut(s) 74, 77
VpaK11BI GGWCC 2 cut(s) 321, 396
XapI RAATTY 3 cut(s) 662, 730, 984
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XhoI CTCGAG 1 cut(s) 896
XmnI GAANNNNTTC 3 cut(s) 665, 827, 1002
XspI CTAG 3 cut(s) 35, 326, 756
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.