Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008817

Physical Location & Seq

Genomic Coordinates Reverse (-)

10223343 .. 10227803

Gene Structure 4461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0127000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGGGGTCCGTTTTAGAGCTTAAAAATAGCTCAAAACAGCAGAACAAGATTACCGCAGAGGACACTATTGTGCACCCCCAAGCGAATCGGAGAACAAAGCATCAAGAAAAGGTGAAAGTGAGAGCTGGTGTTGGTTCGGCAGGAAATGATGCTCATCACAAAGCCAGACAAGATGGAACTGATAGTGTCTTGGTCCAAGAAAAATCTTTGGGAAATCTGAATAGGCAGAGTAGGAAGGAGAAAGCTGCCAAAGTTGATGAGCTTGTAAGGCACATGTCAAACTTGCCTGGTTATCTTCAGCATCCTGAGAGAGGAGAAAAACTGCCAGAAAAGGTTTTGAATTTTGGAGTTCTAGATTGGTCTCGGCTAGAAAAATGGAAGCATAAGCAGAAGCATTCCCCAGGAAAAGGTAGCCACAATACACCTTTGGAAAATATTGCTGCAGCATCTATATCGTCCGGTCTTGTTCGACCTGCGTCACGTCCTGATCAACAGTCTCCGCGCTGTTCTAGTCTCAAGTCATCTCAAAAGGATGTCCTTGCTCAGGGTGTCAAACCTTCTGCTCAGAGTGTTGTGCGCTTCCAAGACTGTGAAACCCCTTCAAAGAATGGCATTAATGGGCAGAAGAAGATACCCTTCCCCAACAGGTCTTTTGGTAGAAATCACTCCGATATAATGCTTGATAAGGGAAAGGGAAAGAGTTCAGCTCAGAGGATCAGTTCAGTAAGGGAAGCTGCACCAGGTTCGAAAAGTTATGGAGTCTCATTTGGTCAAAAGGAAGATTTGAGCAGTTGCGACAGTCAGGCCAAGAAGACAAAGGAGTTGCAAGAGTCAGATATCAAGAGAAAGAATATTGATGAAACGATCATTTCAGAAACAGGATTTCATTCTTCAAAATCTCAAAGTTATGATGTCTTACTCAGTTCAAAGGGAAAGACGATTGCTTGCGATGACAAAACTGAGAAAAGTGTGGAAGAGTTGCCAAAGTTAGATAGAAATCTAGCTCATCAGCCTTGTCCTGTTGAAGAGAATAACATTGTTCTCCTTCCACCAAAGGCATTGCCCCAAAGTAGCTCTCCAAAAGTACTCCAGCTTTCAAAACCAAGAGCATCCTGTGATGTGCATTTGGCAGAAGCCAATAAGATTAGCTTCTCAGGTGACTTTTCTACCAGCGAGATGGACTTTGAAGAACAATATTCTGAAGTTCCACATTCATGCCCACTGCCTTCTGCAGGGAAAAGGCTTACCAGTTCAAGTTTCGATATATCCAAAACATTGGATCAAGAAGATGTTGAACTGTCAACTAGAAAAGGCAGACATCCATCACCCAATCGCCGATTTAGCTTCAGCTTGGGGCGGCTTGGTAGAAGTTTCAGTTTCAAGGAAAATGCAGCTGTACCAGAGTCAAGTTCCACATATATGACTGTCAAGTCAGGCCCTGTGAGACCCGAAACTTCTGATTGTTCAGATAATCCAAAGGGAGAGAAAACAAGTAGTCATAACAGAGCTAGGTCTAGCCCATTGAGAAGGTTGCTAGACCCAATACTGAAGCACAAGGAGGCAAATCCACTCCATTCTGCTGAAGCTGTTAAGGCTATGAAAGCAAATCTTAATACCTTCGTCCCTAGGTCAATTAATGTCAGTGAGTCGTTACAAAAAGAGAAGCGTGAGGCATCATCTGTCCAAGCATTGTTGCAGTTAACGATGAAGAATGGACTTCCTTTGTTTAAATTTTTGGTTGACAGGAGCAGCAACTGTTTTGTGGCAACCATGAAAAATTCATCTGAGAAGGATGATTTTGGCCAGAACTTTACATTTTACTGTGTGAATGAAATCAAGAGAAAAGTTGGCTGGATGAGTCAAGGAAGTAAAAGCAAAAGTTGTGGCTATGCATACAATGTTGTTGGTCAAATGAAGGTTTCAACCTCTGATTTGTCTGATGTTAATGGGCAGAACTTCTGCAAACATATAATAAGAGAGTCTGTTTTGTTTGGTATGGAGCTAAGACAGCAGGCAAATCAAGAAGCACCACAATTCATGCTAAATAGGGAGCTTGCCGCTGCTGTTGTCACGATACCTAGCAAAGATCTGAGCAATGAGGAAACTATGGAAAAGGGCTGCACCAAGTGTTCACCAGAGCACGGATTGTCTTGCAACTGGGAAGACAGTAGTATTGTCATACTTCCAGGCGGCGTCCATAGCTCACCAAACAAAGGAGAGCCTTCGCCATTAATTGCCCGTTGGAAATCTGGTGGATCTTGTGATTGTGGAGGTTGGGATGTTGGTTGTAAATTGCGTGTTCTCTCAAACCAGAACAAGTGCCGTCAGAATTCCAAGACAACCACAGCTTCTCCTAGTTCGGATCATTTTGAACTTTTCGCCGAGGGGGAAGCTCAGGAAAACAGGGCAGTCTTCAGATTGGAACCAGGGAAGGATGGAACCTACTCGATCGAATTCAATACGTCAATTTCTTTGTTGCAAGCATTGTTCATCTGTGTTGTCATATTTAGCAGCCAGAAGCCATCAGATATGTCCGACGCAAAAGTTTCTCAGGAGGCGACTTTGAATGGAAATAGTGGAATCCAGGTGACCGCGCCATCAAAGTATGCTCAAAATCCACCTCACTCCCCTGTTGGGAGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

881

Amino Acids

96.76

Weight (kDa)

9.19

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3527	PF12043	560 - 705	1.4e-12	Domain of unknown function (DUF3527)
DUF3527	PF12043	676 - 836	5.7e-33	Domain of unknown function (DUF3527)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19490
fragaria_vesca	FvH4_6g18250 FvH4_6g18250 FvH4_6g18250 FvH4_6g18250
malus_domestica	MD12G1022300.v1.1 MD14G1019200.v1.1
prunus_persica	Prupe.7G114400_v2.0.a1 Prupe.7G114400_v2.0.a1
pyrus_communis	pycom12g02070 pycom14g01890
rosa_chinensis	RchiOBHm_Chr3g0472661
rosa_laevigata	RLG00000024065
rosa_multiflora	Rmu_sc0003510.1_g000014
rosa_roxburghii	Rroxscaffold_6G00408740
rosa_rugosa	Rorug03G0127000 Rorug03G0127000 Rorug03G0127000
rosa_samantha	Rh3AG179700 Rh3BG205600 Rh3CG202700 Rh3DG170200
rosa_wichuraiana	Rw3G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1429
Acc36I	ACCTGC	1 cut(s)	481
AccII	CGCG	2 cut(s)	502, 2594
AciI	CCGC	6 cut(s)	54, 500, 1357, 2058, 2190, 2592
AclWI	GGATC	4 cut(s)	722, 1287, 2263, 2370
AcoI	YGGCCR	1 cut(s)	1801
AcsI	RAATTY	5 cut(s)	340, 1730, 1777, 2329, 2453
AcuI	CTGAAG	6 cut(s)	281, 1221, 1330, 1568, 1602, 2398
AcyI	GRCGYC	1 cut(s)	2193
AdeI	CACNNNGTG	1 cut(s)	2127
AfaI	GTAC	2 cut(s)	1086, 1398
AfiI	CCNNNNNNNGG	7 cut(s)	311, 407, 544, 1232, 2141, 2213, 2634
AflIII	ACRYGT	1 cut(s)	273
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	6 cut(s)	286, 400, 739, 2185, 2425, 2583
AleI	CACNNNNGTG	1 cut(s)	68
Alw21I	GWGCWC	2 cut(s)	75, 2142
Alw26I	GTCTC	5 cut(s)	366, 501, 518, 766, 1438
Alw44I	GTGCAC	1 cut(s)	71
AlwI	GGATC	4 cut(s)	722, 1287, 2263, 2370
AlwNI	CAGNNNCTG	2 cut(s)	1439, 1755
AoxI	GGCC	3 cut(s)	804, 1435, 1801
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	9 cut(s)	245, 440, 443, 734, 1391, 1749, 2060, 2118, 2511
ApoI	RAATTY	5 cut(s)	340, 1730, 1777, 2329, 2453
AseI	ATTAAT	3 cut(s)	615, 1635, 2231
Asp700I	GAANNNNTTC	1 cut(s)	700
AspA2I	CCTAGG	1 cut(s)	1625
AspLEI	GCGC	3 cut(s)	504, 579, 2596
AspS9I	GGNCC	3 cut(s)	6, 193, 1436
AsuHPI	GGTGA	6 cut(s)	124, 1169, 1317, 2124, 2196, 2599
AsuII	TTCGAA	1 cut(s)	746
AvaII	GGWCC	2 cut(s)	6, 193
AvrII	CCTAGG	1 cut(s)	1625
BaeGI	GKGCMC	1 cut(s)	75
BalI	TGGCCA	1 cut(s)	1803
BbsI	GAAGAC	3 cut(s)	818, 2169, 2404
Bbv12I	GWGCWC	2 cut(s)	75, 2142
BbvI	GCAGC	9 cut(s)	232, 427, 455, 721, 1403, 1761, 2047, 2105, 2523
BccI	CCATC	6 cut(s)	167, 1171, 1330, 2429, 2530, 2605
BceAI	ACGGC	1 cut(s)	2307
BcgI	CGANNNNNNTGC	4 cut(s)	435, 469, 726, 760
BciT130I	CCWGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	5 cut(s)	366, 501, 518, 766, 1438
BfmI	CTRYAG	2 cut(s)	441, 1230
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	2086
BlnI	CCTAGG	1 cut(s)	1625
BmcAI	AGTACT	1 cut(s)	1086
Bme1390I	CCNGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
Bme18I	GGWCC	2 cut(s)	6, 193
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	6, 193, 1436
BmiI	GGNNCC	3 cut(s)	7, 2424, 2440
BmrFI	CCNGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
BmrI	ACTGGG	1 cut(s)	2167
BmsI	GCATC	6 cut(s)	109, 139, 310, 455, 1118, 1682
BmuI	ACTGGG	1 cut(s)	2167
BoxI	GACNNNNGTC	1 cut(s)	475
BpiI	GAAGAC	3 cut(s)	818, 2169, 2404
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	1 cut(s)	1073
Bpu10I	CCTNAGC	2 cut(s)	543, 2394
Bpu14I	TTCGAA	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	500
BsaBI	GATNNNNATC	2 cut(s)	153, 996
BsaHI	GRCGYC	1 cut(s)	2193
BsaI	GGTCTC	2 cut(s)	366, 1438
BsaJI	CCNNGG	4 cut(s)	400, 1625, 2382, 2426
BsaWI	WCCGGW	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	2335, 2365
Bsc4I	CCNNNNNNNGG	7 cut(s)	311, 407, 544, 1232, 2141, 2213, 2634
Bse1I	ACTGG	2 cut(s)	1248, 2162
Bse3DI	GCAATG	2 cut(s)	1058, 2101
Bse8I	GATNNNNATC	2 cut(s)	153, 996
BseBI	CCWGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
BseDI	CCNNGG	4 cut(s)	400, 1625, 2382, 2426
BseGI	GGATG	8 cut(s)	301, 538, 1109, 1318, 1798, 1860, 2284, 2440
BseJI	GATNNNNATC	2 cut(s)	153, 996
BseLI	CCNNNNNNNGG	7 cut(s)	311, 407, 544, 1232, 2141, 2213, 2634
BseMI	GCAATG	2 cut(s)	1058, 2101
BseNI	ACTGG	2 cut(s)	1248, 2162
BseRI	GAGGAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	9 cut(s)	232, 427, 455, 721, 1403, 1761, 2047, 2105, 2523
BsgI	GTGCAG	2 cut(s)	720, 2104
Bsh1236I	CGCG	2 cut(s)	502, 2594
Bsh1285I	CGRYCG	1 cut(s)	2451
BshFI	GGCC	3 cut(s)	806, 1437, 1803
BsiEI	CGRYCG	1 cut(s)	2451
BsiHKAI	GWGCWC	2 cut(s)	75, 2142
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	1607
BslI	CCNNNNNNNGG	7 cut(s)	311, 407, 544, 1232, 2141, 2213, 2634
BsmAI	GTCTC	5 cut(s)	366, 501, 518, 766, 1438
BsmFI	GGGAC	1 cut(s)	1607
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	3 cut(s)	806, 1437, 1803
Bso31I	GGTCTC	2 cut(s)	366, 1438
Bsp119I	TTCGAA	1 cut(s)	746
Bsp1286I	GDGCHC	2 cut(s)	75, 2142
Bsp143I	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
BspACI	CCGC	6 cut(s)	54, 500, 1357, 2058, 2190, 2592
BspANI	GGCC	3 cut(s)	806, 1437, 1803
BspFNI	CGCG	2 cut(s)	502, 2594
BspLI	GGNNCC	3 cut(s)	7, 2424, 2440
BspMAI	CTGCAG	2 cut(s)	445, 1234
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	4 cut(s)	722, 1287, 2263, 2370
BspT104I	TTCGAA	1 cut(s)	746
BspTNI	GGTCTC	2 cut(s)	366, 1438
BsrDI	GCAATG	2 cut(s)	1058, 2101
BsrI	ACTGG	2 cut(s)	1248, 2162
BssECI	CCNNGG	4 cut(s)	400, 1625, 2382, 2426
BssMI	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
BssNI	GRCGYC	1 cut(s)	2193
BssT1I	CCWWGG	1 cut(s)	1625
Bst2UI	CCWGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
Bst4CI	ACNGT	8 cut(s)	495, 590, 800, 1299, 1426, 1757, 1823, 2168
Bst6I	CTCTTC	2 cut(s)	969, 1020
BstACI	GRCGYC	1 cut(s)	2193
BstBI	TTCGAA	1 cut(s)	746
BstC8I	GCNNGC	4 cut(s)	946, 2013, 2055, 2481
BstEII	GGTNACC	1 cut(s)	2587
BstENI	CCTNNNNNAGG	3 cut(s)	309, 542, 1230
BstF5I	GGATG	8 cut(s)	301, 538, 1109, 1318, 1798, 1860, 2284, 2440
BstFNI	CGCG	2 cut(s)	502, 2594
BstHHI	GCGC	3 cut(s)	504, 579, 2596
BstKTI	GATC	8 cut(s)	490, 717, 867, 1282, 2089, 2258, 2365, 2451
BstMAI	GTCTC	5 cut(s)	366, 501, 518, 766, 1438
BstMBI	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
BstMCI	CGRYCG	1 cut(s)	2451
BstMWI	GCNNNNNNNGC	6 cut(s)	268, 1341, 1592, 1601, 2008, 2199
BstNI	CCWGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	475
BstPI	GGTNACC	1 cut(s)	2587
BstSCI	CCNGG	6 cut(s)	286, 400, 739, 2185, 2425, 2583
BstSFI	CTRYAG	2 cut(s)	441, 1230
BstSLI	GKGCMC	1 cut(s)	75
BstUI	CGCG	2 cut(s)	502, 2594
BstV1I	GCAGC	9 cut(s)	232, 427, 455, 721, 1403, 1761, 2047, 2105, 2523
BstV2I	GAAGAC	3 cut(s)	818, 2169, 2404
BstX2I	RGATCY	2 cut(s)	2086, 2255
BstXI	CCANNNNNNTGG	2 cut(s)	1177, 1276
BstYI	RGATCY	2 cut(s)	2086, 2255
BsuRI	GGCC	3 cut(s)	806, 1437, 1803
BtgZI	GCGATG	1 cut(s)	963
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	8 cut(s)	301, 538, 1109, 1318, 1798, 1860, 2284, 2440
BtsI	GCAGTG	1 cut(s)	1220
BtsIMutI	CAGTG	2 cut(s)	1220, 1648
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	4 cut(s)	946, 2013, 2055, 2481
CaiI	CAGNNNCTG	2 cut(s)	1439, 1755
CfoI	GCGC	3 cut(s)	504, 579, 2596
Cfr13I	GGNCC	3 cut(s)	6, 193, 1436
CseI	GACGC	3 cut(s)	465, 2182, 2546
CsiI	ACCWGGT	1 cut(s)	739
Csp6I	GTAC	2 cut(s)	1085, 1397
CspCI	CAANNNNNGTGG	2 cut(s)	1864, 1899
CviAII	CATG	4 cut(s)	274, 1215, 1771, 2038
CviQI	GTAC	2 cut(s)	1085, 1397
DpnI	GATC	8 cut(s)	489, 716, 866, 1281, 2088, 2257, 2364, 2450
DpnII	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
DraI	TTTAAA	1 cut(s)	1729
DraIII	CACNNNGTG	1 cut(s)	2127
DrdI	GACNNNNNNGTC	1 cut(s)	1429
DseDI	GACNNNNNNGTC	1 cut(s)	1429
EaeI	YGGCCR	1 cut(s)	1801
Eam1104I	CTCTTC	2 cut(s)	969, 1020
EarI	CTCTTC	2 cut(s)	969, 1020
Eco130I	CCWWGG	1 cut(s)	1625
Eco31I	GGTCTC	2 cut(s)	366, 1438
Eco32I	GATATC	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	6, 193
Eco57I	CTGAAG	6 cut(s)	281, 1221, 1330, 1568, 1602, 2398
Eco91I	GGTNACC	1 cut(s)	2587
EcoNI	CCTNNNNNAGG	3 cut(s)	309, 542, 1230
EcoO109I	RGGNCCY	1 cut(s)	1436
EcoO65I	GGTNACC	1 cut(s)	2587
EcoRI	GAATTC	2 cut(s)	2329, 2453
EcoRII	CCWGG	6 cut(s)	286, 400, 739, 2185, 2425, 2583
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	1625
EcoT22I	ATGCAT	1 cut(s)	1894
ErhI	CCWWGG	1 cut(s)	1625
FaeI	CATG	4 cut(s)	277, 1218, 1774, 2041
FalI	AAGNNNNNCTT	6 cut(s)	620, 652, 1133, 1165, 1593, 1625
FaqI	GGGAC	1 cut(s)	1607
FatI	CATG	4 cut(s)	273, 1214, 1770, 2037
FbaI	TGATCA	1 cut(s)	487
FokI	GGATG	8 cut(s)	288, 545, 1096, 1305, 1805, 1867, 2291, 2447
GlaI	GCGC	3 cut(s)	503, 578, 2595
GsuI	CTGGAG	1 cut(s)	1073
HaeIII	GGCC	3 cut(s)	806, 1437, 1803
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	3 cut(s)	465, 2182, 2546
HhaI	GCGC	3 cut(s)	504, 579, 2596
Hin1I	GRCGYC	1 cut(s)	2193
Hin1II	CATG	4 cut(s)	277, 1218, 1774, 2041
Hin6I	GCGC	3 cut(s)	502, 577, 2594
HinP1I	GCGC	3 cut(s)	502, 577, 2594
HincII	GTYRAC	3 cut(s)	1302, 1701, 1741
HindII	GTYRAC	3 cut(s)	1302, 1701, 1741
HinfI	GANTC	9 cut(s)	85, 759, 830, 1403, 1646, 1858, 1979, 2580, 2640
HpaI	GTTAAC	1 cut(s)	1701
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	6 cut(s)	124, 1169, 1317, 2124, 2196, 2599
Hpy166II	GTNNAC	5 cut(s)	73, 1302, 1701, 1741, 2132
Hpy8I	GTNNAC	5 cut(s)	73, 1302, 1701, 1741, 2132
Hpy99I	CGWCG	1 cut(s)	2540
HpyCH4III	ACNGT	8 cut(s)	495, 590, 800, 1299, 1426, 1757, 1823, 2168
HpyCH4IV	ACGT	2 cut(s)	481, 2462
HpyF10VI	GCNNNNNNNGC	6 cut(s)	268, 1341, 1592, 1601, 2008, 2199
HpySE526I	ACGT	2 cut(s)	481, 2462
Hsp92I	GRCGYC	1 cut(s)	2193
Hsp92II	CATG	4 cut(s)	277, 1218, 1774, 2041
HspAI	GCGC	3 cut(s)	502, 577, 2594
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	1701
Kzo9I	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
LmnI	GCTCC	3 cut(s)	1746, 1999, 2050
Lsp1109I	GCAGC	9 cut(s)	232, 427, 455, 721, 1403, 1761, 2047, 2105, 2523
LweI	GCATC	6 cut(s)	109, 139, 310, 455, 1118, 1682
MabI	ACCWGGT	1 cut(s)	739
MaeII	ACGT	2 cut(s)	481, 2462
MaeIII	GTNAC	5 cut(s)	477, 1157, 1650, 2068, 2587
MalI	GATC	8 cut(s)	489, 716, 866, 1281, 2088, 2257, 2364, 2450
MboI	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
MflI	RGATCY	2 cut(s)	2086, 2255
MhlI	GDGCHC	2 cut(s)	75, 2142
MlsI	TGGCCA	1 cut(s)	1803
MluNI	TGGCCA	1 cut(s)	1803
MlyI	GAGTC	6 cut(s)	768, 839, 1412, 1655, 1867, 1988
MmeI	TCCRAC	2 cut(s)	2222, 2559
Mox20I	TGGCCA	1 cut(s)	1803
Mph1103I	ATGCAT	1 cut(s)	1894
MroXI	GAANNNNTTC	1 cut(s)	700
MscI	TGGCCA	1 cut(s)	1803
MseI	TTAA	9 cut(s)	21, 615, 1590, 1611, 1635, 1700, 1728, 1944, 2231
MslI	CAYNNNNRTG	3 cut(s)	68, 1213, 1418
Msp20I	TGGCCA	1 cut(s)	1803
MspA1I	CMGCKG	2 cut(s)	1394, 2060
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
MvnI	CGCG	2 cut(s)	502, 2594
MwoI	GCNNNNNNNGC	6 cut(s)	268, 1341, 1592, 1601, 2008, 2199
NdeII	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
NlaIII	CATG	4 cut(s)	277, 1218, 1774, 2041
NlaIV	GGNNCC	3 cut(s)	7, 2424, 2440
NmeAIII	GCCGAG	2 cut(s)	343, 2407
NmuCI	GTSAC	4 cut(s)	477, 1157, 2068, 2587
NsiI	ATGCAT	1 cut(s)	1894
NspI	RCATGY	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	746
OliI	CACNNNNGTG	1 cut(s)	68
PciI	ACATGT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	2 cut(s)	85, 2580
Ple19I	CGATCG	1 cut(s)	2451
PleI	GAGTC	6 cut(s)	767, 838, 1411, 1654, 1866, 1987
PpsI	GAGTC	6 cut(s)	767, 838, 1411, 1654, 1866, 1987
PscI	ACATGT	1 cut(s)	273
PshAI	GACNNNNGTC	1 cut(s)	475
PshBI	ATTAAT	3 cut(s)	615, 1635, 2231
Psp6I	CCWGG	6 cut(s)	286, 400, 739, 2185, 2425, 2583
PspEI	GGTNACC	1 cut(s)	2587
PspGI	CCWGG	6 cut(s)	286, 400, 739, 2185, 2425, 2583
PspN4I	GGNNCC	3 cut(s)	7, 2424, 2440
PspPI	GGNCC	3 cut(s)	6, 193, 1436
PstI	CTGCAG	2 cut(s)	445, 1234
PstNI	CAGNNNCTG	2 cut(s)	1439, 1755
PsuI	RGATCY	2 cut(s)	2086, 2255
PvuI	CGATCG	1 cut(s)	2451
PvuII	CAGCTG	1 cut(s)	1394
RsaI	GTAC	2 cut(s)	1086, 1398
RsaNI	GTAC	2 cut(s)	1085, 1397
RseI	CAYNNNNRTG	3 cut(s)	68, 1213, 1418
SaqAI	TTAA	9 cut(s)	21, 615, 1590, 1611, 1635, 1700, 1728, 1944, 2231
Sau3AI	GATC	8 cut(s)	487, 714, 864, 1279, 2086, 2255, 2362, 2448
Sau96I	GGNCC	3 cut(s)	6, 193, 1436
ScaI	AGTACT	1 cut(s)	1086
SchI	GAGTC	6 cut(s)	768, 839, 1412, 1655, 1867, 1988
ScrFI	CCNGG	6 cut(s)	288, 402, 741, 2187, 2427, 2585
SduI	GDGCHC	2 cut(s)	75, 2142
SexAI	ACCWGGT	1 cut(s)	739
SfaNI	GCATC	6 cut(s)	109, 139, 310, 455, 1118, 1682
SfcI	CTRYAG	2 cut(s)	441, 1230
SfuI	TTCGAA	1 cut(s)	746
SinI	GGWCC	2 cut(s)	6, 193
SmiMI	CAYNNNNRTG	3 cut(s)	68, 1213, 1418
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SsiI	CCGC	6 cut(s)	54, 500, 1357, 2058, 2190, 2592
SspI	AATATT	3 cut(s)	436, 853, 1196
StyD4I	CCNGG	6 cut(s)	286, 400, 739, 2185, 2425, 2583
StyI	CCWWGG	1 cut(s)	1625
TaaI	ACNGT	8 cut(s)	495, 590, 800, 1299, 1426, 1757, 1823, 2168
TaiI	ACGT	2 cut(s)	484, 2465
TaqI	TCGA	5 cut(s)	469, 746, 1260, 2447, 2451
TatI	WGTACW	1 cut(s)	1084
TauI	GCSGC	3 cut(s)	1360, 2060, 2193
TfiI	GAWTC	2 cut(s)	85, 2580
Tru1I	TTAA	9 cut(s)	21, 615, 1590, 1611, 1635, 1700, 1728, 1944, 2231
Tru9I	TTAA	9 cut(s)	21, 615, 1590, 1611, 1635, 1700, 1728, 1944, 2231
TscAI	CASTG	2 cut(s)	1227, 1648
TseFI	GTSAC	4 cut(s)	477, 1157, 2068, 2587
TseI	GCWGC	9 cut(s)	245, 440, 443, 734, 1391, 1749, 2060, 2118, 2511
Tsp45I	GTSAC	4 cut(s)	477, 1157, 2068, 2587
TspGWI	ACGGA	1 cut(s)	2157
TspRI	CASTG	2 cut(s)	1227, 1648
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	2 cut(s)	6, 193
VspI	ATTAAT	3 cut(s)	615, 1635, 2231
XagI	CCTNNNNNAGG	3 cut(s)	309, 542, 1230
XapI	RAATTY	5 cut(s)	340, 1730, 1777, 2329, 2453
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	1 cut(s)	277
XmaJI	CCTAGG	1 cut(s)	1625
XmnI	GAANNNNTTC	1 cut(s)	700
ZrmI	AGTACT	1 cut(s)	1086
Zsp2I	ATGCAT	1 cut(s)	1894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.