Rh3AG179700
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008817
Physical Location & Seq
Forward (+)
16820910 .. 16824537
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG179700.1

Sequence Viewer

Length: 1206 bp
ATGAACAAAAAGATTGCAAAGTTCGAGCACGATGCAGAATTGACCACTTCAACTCCTATCTGCACTACAAGTTATCCATCATTTAGCTGCACTAAGTCAAGGCGAAATCTCACTGAGGAGGAAAAAGAAGAACGGAGAATACGCAGAATCTTGGCCAACAGAGAGTCAGCTAGGCAGACAATTCGCCGAAGGCAGGCTCTATGTGAGGATTTGACTAAAAAAGCTGCAGATTTAGCATTGGAGAATGAAAGTCTAAAAAGGAAAAAGGATTTGGCCTTAAAACAATATCAGTCTTTGGAAGAAACAAATAGGCTCTTAAAAGTTCAGATGGCTAAGGCGAGAAAAGCAGAGGTTGAGGAAACTCCGGATGAAAATATGTCGGCCTATGTCCAGATACCTTCGTCTTCACCTACGAATCCCCCTTTGTTCTTGTTTAACCGTCCACCATTTACACCTGTTTTCTGGCCTTCTATCATTCAATCTTCAAATTCCATTCAGTTGCAACAGGTACCACAAAACCCAATGGCCACTCCATCAAACATCTCTTTACCCTGTAATGGTACAGCTGATTCTTCTCATGAACTAGGAAACCCCATAAATGTTAACGGATCAAGAACCCCCTTATATGTATTTCCATGTCCTTGGTTCTTTCCTCATTTTGATAATGGGAATGGACTCCAACCTCAGTCATCATGCCTGGAAAATAAAAAAGAAGGAGCTTTCTTTAATAATCAGTGCAGTGCTAGTTCATCTTCAAGAACTGCTGCACAGTTGGACAACAACCAGTCCACTTTCCCTGTTAGATTAGACACAGAAGCTTCTGGCTCGATGGAAGCTGGACCAAGAACTGATCTGAATGAAAACCCAGCTCAGTTTCCTCTCGATGGAGGTGATCAACATACAGGCTTTCACCCTAAAGAAAATGGATCTAGAGAGATATTTCTTTCTCCTTTGCTGAACCATGGAGGAGTTGCGTCCACTATAAAGCATGAGAATGGACTGGAGTCAGATTTCAGTGCAAATACTGAAAAGTCTTCGACAGCGTGCCATCCGTTTTCTTCCTTGCCTGAGAAGAATAGTGAGCCAATCATCTACCCCAGTAGGAAAATAGCGGATGCCATTGCAGCCGCTGAGGCACGAAAGAGGAGGAAGAAACTTACAAAGCTAAAGAACCTTCATGGCCGTCAGTGTCGAATGCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

401

Amino Acids

44.76

Weight (kDa)

8.83

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 41 - 103 8.3e-06 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 508
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 2 cut(s) 1112, 1128
AclWI GGATC 2 cut(s) 616, 934
AcoI YGGCCR 3 cut(s) 153, 525, 1180
AcsI RAATTY 1 cut(s) 487
AfaI GTAC 2 cut(s) 510, 562
AfiI CCNNNNNNNGG 3 cut(s) 193, 557, 884
AgsI TTSAA 4 cut(s) 51, 479, 486, 756
AjnI CCWGG 1 cut(s) 696
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 9 cut(s) 87, 170, 224, 566, 719, 818, 836, 869, 1165
AluI AGCT 9 cut(s) 87, 170, 224, 566, 719, 818, 836, 869, 1165
Alw21I GWGCWC 1 cut(s) 30
AlwI GGATC 2 cut(s) 616, 934
AlwNI CAGNNNCTG 1 cut(s) 1130
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 6 cut(s) 153, 273, 381, 464, 525, 1180
ApeKI GCWGC 4 cut(s) 87, 224, 764, 1124
ApoI RAATTY 1 cut(s) 487
Asp718I GGTACC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 3 cut(s) 399, 902, 902
AvaII GGWCC 1 cut(s) 839
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BalI TGGCCA 2 cut(s) 155, 527
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 2 cut(s) 396, 1026
Bbv12I GWGCWC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 1131
BbvI GCAGC 4 cut(s) 74, 211, 751, 1136
BccI CCATC 6 cut(s) 85, 322, 541, 823, 878, 1056
BceAI ACGGC 1 cut(s) 1167
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 164, 198
BciT130I CCWGG 1 cut(s) 698
BclI TGATCA 1 cut(s) 892
BfaI CTAG 4 cut(s) 171, 584, 744, 930
BfmI CTRYAG 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 1133
BisI GCNGC 5 cut(s) 88, 225, 765, 1125, 1128
BlsI GCNGC 5 cut(s) 89, 226, 766, 1126, 1129
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 698
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 2 cut(s) 22, 1105
BmuI ACTGGG 1 cut(s) 1092
BoxI GACNNNNGTC 1 cut(s) 1003
BpiI GAAGAC 2 cut(s) 396, 1026
BpmI CTGGAG 1 cut(s) 1022
Bpu10I CCTNAGC 2 cut(s) 333, 1131
BsaJI CCNNGG 2 cut(s) 641, 961
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 557, 884
Bse1I ACTGG 3 cut(s) 784, 1005, 1098
Bse3DI GCAATG 2 cut(s) 1119, 1205
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 641, 961
BseGI GGATG 3 cut(s) 373, 1048, 1120
BseLI CCNNNNNNNGG 3 cut(s) 193, 557, 884
BseMI GCAATG 2 cut(s) 1119, 1205
BseMII CTCAG 5 cut(s) 105, 698, 884, 1059, 1122
BseNI ACTGG 3 cut(s) 784, 1005, 1098
BseRI GAGGAG 3 cut(s) 131, 981, 1159
BseXI GCAGC 4 cut(s) 74, 211, 751, 1136
BseYI CCCAGC 1 cut(s) 865
BsgI GTGCAG 4 cut(s) 46, 73, 750, 757
BshFI GGCC 6 cut(s) 155, 275, 383, 466, 527, 1182
BshNI GGYRCC 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 193, 557, 884
BsmI GAATGC 1 cut(s) 1200
BsnI GGCC 6 cut(s) 155, 275, 383, 466, 527, 1182
Bsp1286I GDGCHC 1 cut(s) 30
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 4 cut(s) 608, 850, 892, 926
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 2 cut(s) 1112, 1128
BspANI GGCC 6 cut(s) 155, 275, 383, 466, 527, 1182
BspCNI CTCAG 5 cut(s) 106, 697, 883, 1060, 1123
BspEI TCCGGA 1 cut(s) 364
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 510
BspMAI CTGCAG 1 cut(s) 229
BspPI GGATC 2 cut(s) 616, 934
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 1119, 1205
BsrI ACTGG 3 cut(s) 784, 1005, 1098
BssECI CCNNGG 2 cut(s) 641, 961
BssMI GATC 4 cut(s) 608, 850, 892, 926
BssT1I CCWWGG 2 cut(s) 641, 961
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 2 cut(s) 440, 771
BstC8I GCNNGC 2 cut(s) 195, 1045
BstDEI CTNAG 7 cut(s) 93, 114, 333, 684, 870, 1068, 1131
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 3 cut(s) 373, 1048, 1120
BstKTI GATC 4 cut(s) 611, 853, 895, 929
BstMBI GATC 4 cut(s) 608, 850, 892, 926
BstMWI GCNNNNNNNGC 4 cut(s) 233, 344, 1124, 1133
BstNI CCWGG 1 cut(s) 698
BstPAI GACNNNNGTC 1 cut(s) 1003
BstSCI CCNGG 1 cut(s) 696
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 74, 211, 751, 1136
BstV2I GAAGAC 2 cut(s) 396, 1026
BstX2I RGATCY 1 cut(s) 926
BstXI CCANNNNNNTGG 1 cut(s) 642
BstYI RGATCY 1 cut(s) 926
BsuRI GGCC 6 cut(s) 155, 275, 383, 466, 527, 1182
BtgI CCRYGG 1 cut(s) 961
BtsCI GGATG 3 cut(s) 373, 1048, 1120
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 5 cut(s) 111, 740, 745, 1021, 1193
Cac8I GCNNGC 2 cut(s) 195, 1045
CaiI CAGNNNCTG 1 cut(s) 1130
CciI TCATGA 1 cut(s) 577
Cfr13I GGNCC 1 cut(s) 839
CseI GACGC 1 cut(s) 963
Csp6I GTAC 2 cut(s) 509, 561
CviAII CATG 6 cut(s) 578, 636, 693, 962, 989, 1178
CviQI GTAC 2 cut(s) 509, 561
DdeI CTNAG 7 cut(s) 93, 114, 333, 684, 870, 1068, 1131
DpnI GATC 4 cut(s) 610, 852, 894, 928
DpnII GATC 4 cut(s) 608, 850, 892, 926
EaeI YGGCCR 3 cut(s) 153, 525, 1180
Eco130I CCWWGG 2 cut(s) 641, 961
Eco47I GGWCC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 2 cut(s) 641, 961
ErhI CCWWGG 2 cut(s) 641, 961
FaeI CATG 6 cut(s) 581, 639, 696, 965, 992, 1181
FatI CATG 6 cut(s) 577, 635, 692, 961, 988, 1177
FbaI TGATCA 1 cut(s) 892
Fnu4HI GCNGC 5 cut(s) 88, 225, 765, 1125, 1128
FokI GGATG 3 cut(s) 380, 1035, 1127
Fsp4HI GCNGC 5 cut(s) 88, 225, 765, 1125, 1128
FspBI CTAG 4 cut(s) 171, 584, 744, 930
GluI GCNGC 5 cut(s) 88, 225, 765, 1125, 1128
GsaI CCCAGC 1 cut(s) 869
GsuI CTGGAG 1 cut(s) 1022
HaeIII GGCC 6 cut(s) 155, 275, 383, 466, 527, 1182
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 963
Hin1II CATG 6 cut(s) 581, 639, 696, 965, 992, 1181
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 6 cut(s) 147, 164, 415, 569, 675, 1004
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 1 cut(s) 365
HphI GGTGA 3 cut(s) 399, 902, 902
Hpy166II GTNNAC 4 cut(s) 443, 604, 789, 978
Hpy188I TCNGA 3 cut(s) 327, 855, 1009
Hpy188III TCNNGA 7 cut(s) 365, 391, 578, 612, 756, 881, 930
Hpy8I GTNNAC 4 cut(s) 443, 604, 789, 978
HpyAV CCTTC 5 cut(s) 183, 408, 477, 707, 1184
HpyCH4III ACNGT 2 cut(s) 440, 771
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 344, 1124, 1133
HpyF3I CTNAG 7 cut(s) 93, 114, 333, 684, 870, 1068, 1131
Hsp92II CATG 6 cut(s) 581, 639, 696, 965, 992, 1181
Kpn2I TCCGGA 1 cut(s) 364
KpnI GGTACC 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 892
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 4 cut(s) 608, 850, 892, 926
LmnI GCTCC 1 cut(s) 716
Lsp1109I GCAGC 4 cut(s) 74, 211, 751, 1136
LweI GCATC 2 cut(s) 22, 1105
MaeI CTAG 4 cut(s) 171, 584, 744, 930
MalI GATC 4 cut(s) 610, 852, 894, 928
MboI GATC 4 cut(s) 608, 850, 892, 926
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 2 cut(s) 155, 527
MluCI AATT 3 cut(s) 38, 180, 487
MluNI TGGCCA 2 cut(s) 155, 527
MlyI GAGTC 3 cut(s) 173, 669, 1013
MmeI TCCRAC 2 cut(s) 703, 753
Mox20I TGGCCA 2 cut(s) 155, 527
MroI TCCGGA 1 cut(s) 364
MscI TGGCCA 2 cut(s) 155, 527
MseI TTAA 6 cut(s) 278, 317, 435, 603, 726, 1204
MslI CAYNNNNRTG 1 cut(s) 993
Msp20I TGGCCA 2 cut(s) 155, 527
MspA1I CMGCKG 2 cut(s) 566, 1130
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 698
Mva1269I GAATGC 1 cut(s) 1200
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 4 cut(s) 233, 344, 1124, 1133
NcoI CCATGG 1 cut(s) 961
NdeII GATC 4 cut(s) 608, 850, 892, 926
NlaIII CATG 6 cut(s) 581, 639, 696, 965, 992, 1181
NlaIV GGNNCC 1 cut(s) 510
PagI TCATGA 1 cut(s) 577
PctI GAATGC 1 cut(s) 1200
PfeI GAWTC 3 cut(s) 147, 415, 569
PkrI GCNGC 5 cut(s) 89, 226, 766, 1126, 1129
PleI GAGTC 3 cut(s) 172, 669, 1012
PpsI GAGTC 3 cut(s) 172, 669, 1012
PshAI GACNNNNGTC 1 cut(s) 1003
Psp6I CCWGG 1 cut(s) 696
PspFI CCCAGC 1 cut(s) 865
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 1 cut(s) 510
PspPI GGNCC 1 cut(s) 839
PsrI GAACNNNNNNTAC 2 cut(s) 123, 155
PstI CTGCAG 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 1130
PsuI RGATCY 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 2 cut(s) 510, 562
RsaNI GTAC 2 cut(s) 509, 561
RseI CAYNNNNRTG 1 cut(s) 993
SaqAI TTAA 6 cut(s) 278, 317, 435, 603, 726, 1204
SatI GCNGC 5 cut(s) 88, 225, 765, 1125, 1128
Sau3AI GATC 4 cut(s) 608, 850, 892, 926
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 3 cut(s) 173, 669, 1013
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 2 cut(s) 22, 1105
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 1 cut(s) 993
Sse9I AATT 3 cut(s) 38, 180, 487
SsiI CCGC 2 cut(s) 1112, 1128
SspMI CTAG 4 cut(s) 171, 584, 744, 930
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 2 cut(s) 641, 961
TaaI ACNGT 2 cut(s) 440, 771
TaqI TCGA 5 cut(s) 24, 827, 882, 1037, 1192
TasI AATT 3 cut(s) 38, 180, 487
TauI GCSGC 1 cut(s) 1130
TfiI GAWTC 3 cut(s) 147, 415, 569
Tru1I TTAA 6 cut(s) 278, 317, 435, 603, 726, 1204
Tru9I TTAA 6 cut(s) 278, 317, 435, 603, 726, 1204
TscAI CASTG 5 cut(s) 118, 740, 745, 1021, 1193
TseI GCWGC 4 cut(s) 87, 224, 764, 1124
TspDTI ATGAA 7 cut(s) 17, 261, 384, 594, 738, 873, 1166
TspGWI ACGGA 3 cut(s) 148, 621, 1041
TspRI CASTG 5 cut(s) 118, 740, 745, 1021, 1193
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 487
XbaI TCTAGA 1 cut(s) 929
XspI CTAG 4 cut(s) 171, 584, 744, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.