Rorug03G0185100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016410
Physical Location & Seq
Forward (+)
15979968 .. 15980294
327 bp
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UTR
Exon/CDS
Intron
Rorug03G0185100.1

Sequence Viewer

Length: 327 bp
ATGGATCTAAGGCCATCCAAAGGCAAGGGTCTACGTCAATCGGAGGTATATATGGTTGGCAAGTTGCTCACAGCTAGGGAGTATAGGAAGCGATCTTTTTTGGGGATGTTTCGATCTACATGGCATGTCGGTGGGGATCTTAGGGTGGAGCCGGCAACAGGGGACCGGGTTCTGTTCACATTCTCGGATCCGATGGACTGCCCCCGTGTTTGGCGTGGCGGCCCTTGGGGTTTCAACCGAGCCCCTGTAGCACTGGCAGAATATGATGGTATTGAACCAGTTGAACAAGTGTTGCTGCAATGTTCTTCCTATTGGGTTACACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C Mur_ligase_C Mur_ligase_M

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

9.1

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016410)

Species Orthologous Gene IDs
malus_domestica MD12G1063100.v1.1
prunus_persica Prupe.7G070400_v2.0.a1
pyrus_communis pycom12g05560
rosa_chinensis RchiOBHm_Chr3g0480711 RchiOBHm_Chr3g0480721
rosa_multiflora Rmu_sc0001135.1_g000007 Rmu_sc0003902.1_g000026
rosa_roxburghii Rroxscaffold_6G00401140
rosa_rugosa Rorug03G0185000 Rorug03G0185100
rosa_samantha Rh3AG237200 Rh3BG270300 Rh3CG266500 Rh3DG262700
rosa_wichuraiana Rw3G021240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AciI CCGC 1 cut(s) 219
AclWI GGATC 4 cut(s) 12, 144, 182, 195
AfiI CCNNNNNNNGG 3 cut(s) 20, 158, 210
AgsI TTSAA 3 cut(s) 235, 275, 284
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwI GGATC 4 cut(s) 12, 144, 182, 195
AoxI GGCC 2 cut(s) 11, 220
ApeKI GCWGC 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 163, 221
AsuC2I CCSGG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 163
BamHI GGATCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 282
BccI CCATC 3 cut(s) 22, 187, 260
BcnI CCSGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 2 cut(s) 246, 323
BisI GCNGC 2 cut(s) 220, 296
BlsI GCNGC 2 cut(s) 221, 297
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 221
BmiI GGNNCC 3 cut(s) 150, 164, 189
BmrFI CCNGG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 158, 210
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 258, 278
Bse3DI GCAATG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 2 cut(s) 14, 111
BseLI CCNNNNNNNGG 3 cut(s) 20, 158, 210
BseMI GCAATG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 258, 278
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 13, 222
BsiSI CCGG 2 cut(s) 152, 166
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 20, 158, 210
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 13, 222
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 5 cut(s) 4, 92, 113, 136, 187
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 13, 222
BspLI GGNNCC 3 cut(s) 150, 164, 189
BspPI GGATC 4 cut(s) 12, 144, 182, 195
BsrDI GCAATG 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 2 cut(s) 258, 278
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 5 cut(s) 4, 92, 113, 136, 187
BssT1I CCWWGG 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 8, 140
BstF5I GGATG 2 cut(s) 14, 111
BstKTI GATC 5 cut(s) 7, 95, 116, 139, 190
BstMBI GATC 5 cut(s) 4, 92, 113, 136, 187
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 2 cut(s) 246, 323
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 3 cut(s) 4, 136, 187
BstYI RGATCY 3 cut(s) 4, 136, 187
BsuRI GGCC 2 cut(s) 13, 222
BtsCI GGATG 2 cut(s) 14, 111
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 163, 221
CviAII CATG 2 cut(s) 120, 125
CviJI RGCY 5 cut(s) 13, 74, 151, 222, 242
CviKI_1 RGCY 5 cut(s) 13, 74, 151, 222, 242
DdeI CTNAG 2 cut(s) 8, 140
DpnI GATC 5 cut(s) 6, 94, 115, 138, 189
DpnII GATC 5 cut(s) 4, 92, 113, 136, 187
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 123, 128
FaiI YATR 8 cut(s) 49, 51, 53, 84, 121, 126, 264, 325
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 119, 124
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 220, 296
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 2 cut(s) 220, 296
FspBI CTAG 1 cut(s) 75
GluI GCNGC 2 cut(s) 220, 296
HaeIII GGCC 2 cut(s) 13, 222
HapII CCGG 2 cut(s) 152, 166
Hin1II CATG 2 cut(s) 123, 128
HpaII CCGG 2 cut(s) 152, 166
Hpy166II GTNNAC 2 cut(s) 32, 177
Hpy188I TCNGA 3 cut(s) 43, 187, 192
Hpy8I GTNNAC 2 cut(s) 32, 177
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 8, 140
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 123, 128
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 5 cut(s) 4, 92, 113, 136, 187
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 6 cut(s) 144, 165, 179, 239, 258, 291
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 316
MalI GATC 5 cut(s) 6, 94, 115, 138, 189
MboI GATC 5 cut(s) 4, 92, 113, 136, 187
MboII GAAGA 1 cut(s) 297
MflI RGATCY 3 cut(s) 4, 136, 187
MhlI GDGCHC 1 cut(s) 244
MnlI CCTC 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 2 cut(s) 152, 166
MspR9I CCNGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 153
NciI CCSGG 1 cut(s) 167
NdeII GATC 5 cut(s) 4, 92, 113, 136, 187
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 123, 128
NlaIV GGNNCC 3 cut(s) 150, 164, 189
NspI RCATGY 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 153
PkrI GCNGC 2 cut(s) 221, 297
PspN4I GGNNCC 3 cut(s) 150, 164, 189
PspPI GGNCC 2 cut(s) 163, 221
PsuI RGATCY 3 cut(s) 4, 136, 187
RseI CAYNNNNRTG 1 cut(s) 129
SatI GCNGC 2 cut(s) 220, 296
Sau3AI GATC 5 cut(s) 4, 92, 113, 136, 187
Sau96I GGNCC 2 cut(s) 163, 221
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 244
SetI ASST 3 cut(s) 37, 48, 76
SfcI CTRYAG 2 cut(s) 246, 323
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 129
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 112
TauI GCSGC 1 cut(s) 222
TscAI CASTG 1 cut(s) 258
TseI GCWGC 1 cut(s) 295
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 163
XceI RCATGY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.