Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010648

Physical Location & Seq

Genomic Coordinates Forward (+)

41884334 .. 41893169

Gene Structure 8836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0346100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATGAAGGACTTTGATGATTCCTCCTCTCCGATTCGCCTTAACATAGGAGGAAAGAAATTTTACACCACTATTACTACTTTGACTCAGCGTGACCCCGATTCAATGCTTGCTGCAATGTTCAGTGGTCGACATACTTTATGTCAGGAAAATGGATATGTTTTTGTTGATAGGGATGGCAAACATTTTCGCCACATACTTAATTGGTTACGGGATGGTGTTGTTCCCACATTAAAAGATTCCAAATTTGCAGAACTTCTTCGGGAGGCAGAATACTATCAACTACTTGGGCTGATGGATGGAATACACGCTGTTCAAAATAAGAAGAAGGATGATGAAGAGCCAAATTCAGAATTAACACGCACTGATATCCTCAAGTGTATACAGTCTGGGAAAGTCAGGTTTCGTGGTGTTAATCTTTCTGGCCTTGATCTTTCGAAATTGGACCTGTCATTTGTGGACTTCAGCTATGCGTGTCTGAGAAATGTGTTCTTCTCACGTGCAAACCTTCATTGTGCTAAGTTCAAGGATGCGGACGCTGAGGGTGCCATCTTTCATAATGCAACTTTGCGAGAATGTGAATTTACTGGGGCAAATCTCCGTGGAGCTTTGTTGGCTGGTACTAATCTTCAGAGTGCAAATCTACAAGATGCATGCTTAATAGATTGTAGCTTCTGCCAGGCAGACCTTCGATCTGCACACCTACAGAATGCGGATCTTACAAATGCCAATTTAGAGGGAGCTATTCTGGAAGGAGCAAATTTGAAGGGTGCTAAGTTGAGTAATACCAATTTGAAGGATGCAAACCTTCAACGAGCTTATTTGCGGCAAGTGAATCTTCGAGATACGCATTTGGAAGGTGCGAAGCTTGATGGTGCTAATTTACTTGGAGCAATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009141 GO:0009143 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046434 GO:0046483 GO:0046700 GO:0047429 GO:0055086 GO:0071704 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

Ham1p_like

Protein Analysis

300

Amino Acids

33.35

Weight (kDa)

6.71

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB_2	PF02214	12 - 98	1.8e-19	BTB/POZ domain
Pentapeptide_4	PF13599	133 - 203	1.9e-08	Pentapeptide repeat region
Pentapeptide	PF00805	135 - 170	5.7e-07	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	149 - 187	6.4e-09	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	168 - 205	7.4e-09	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	190 - 225	3.8e-08	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	205 - 270	2.9e-10	Pentapeptide repeat region
Pentapeptide	PF00805	209 - 247	1.5e-10	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	228 - 267	1.2e-12	Pentapeptide repeats (8 copies)
Pentapeptide_4	PF13599	229 - 294	2.5e-09	Pentapeptide repeat region
Pentapeptide	PF00805	268 - 298	6.7e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24230 AT4G13710 AT4G13710
fragaria_vesca	FvH4_4g05760 FvH4_4g05760 FvH4_4g05760 FvH4_4g05760 FvH4_4g05760
malus_domestica	MD13G1231000.v1.1 MD16G1236000.v1.1
prunus_persica	Prupe.1G060900_v2.0.a1
pyrus_communis	pycom13g20360 pycom16g19790
rosa_chinensis	RchiOBHm_Chr4g0396921
rosa_laevigata	RLG00000009489
rosa_roxburghii	Rroxscaffold_5G00341840
rosa_rugosa	Rorug03G0346100
rosa_samantha	Rh4AG075300 Rh4DG069100
rosa_wichuraiana	Rw4G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	2 cut(s)	130, 382
AciI	CCGC	3 cut(s)	533, 713, 826
AclWI	GGATC	1 cut(s)	723
AcsI	RAATTY	5 cut(s)	59, 245, 346, 581, 760
AcuI	CTGAAG	2 cut(s)	448, 614
AcvI	CACGTG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	622
AgsI	TTSAA	6 cut(s)	105, 317, 526, 766, 796, 812
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	6 cut(s)	468, 608, 672, 743, 818, 868
AluI	AGCT	6 cut(s)	468, 608, 672, 743, 818, 868
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	5 cut(s)	59, 245, 346, 581, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	445
AsuII	TTCGAA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	545
BbrPI	CACGTG	1 cut(s)	500
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	6 cut(s)	170, 209, 289, 293, 557, 866
BciT130I	CCWGG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	704
BisI	GCNGC	2 cut(s)	114, 827
BlsI	GCNGC	2 cut(s)	115, 828
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	3 cut(s)	520, 640, 790
BmuI	ACTGGG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	6 cut(s)	181, 220, 304, 337, 535, 805
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	3 cut(s)	101, 470, 531
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	437
Bsp143I	GATC	3 cut(s)	430, 692, 715
BspACI	CCGC	3 cut(s)	533, 713, 826
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	3 cut(s)	100, 471, 532
BspLI	GGNNCC	1 cut(s)	547
BspPI	GGATC	1 cut(s)	723
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	3 cut(s)	430, 692, 715
BssNAI	GTATAC	1 cut(s)	383
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	111, 655
BstDEI	CTNAG	5 cut(s)	87, 479, 519, 540, 774
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	6 cut(s)	181, 220, 304, 337, 535, 805
BstKTI	GATC	3 cut(s)	433, 695, 718
BstMBI	GATC	3 cut(s)	430, 692, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 614
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	704
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	6 cut(s)	181, 220, 304, 337, 535, 805
BtsIMutI	CAGTG	2 cut(s)	130, 363
Cac8I	GCNNGC	2 cut(s)	111, 655
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	1 cut(s)	654
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	5 cut(s)	87, 479, 519, 540, 774
DpnI	GATC	3 cut(s)	432, 694, 717
DpnII	GATC	3 cut(s)	430, 692, 715
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	448, 614
Eco72I	CACGTG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	655
FaeI	CATG	1 cut(s)	657
FaiI	YATR	9 cut(s)	47, 135, 142, 159, 197, 383, 471, 558, 655
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FatI	CATG	1 cut(s)	653
FblI	GTMKAC	2 cut(s)	130, 382
Fnu4HI	GCNGC	2 cut(s)	114, 827
FokI	GGATG	6 cut(s)	188, 227, 311, 344, 542, 812
Fsp4HI	GCNGC	2 cut(s)	114, 827
GluI	GCNGC	2 cut(s)	114, 827
HaeIII	GGCC	1 cut(s)	426
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	6 cut(s)	20, 34, 85, 101, 239, 835
Hpy166II	GTNNAC	3 cut(s)	131, 383, 460
Hpy188I	TCNGA	5 cut(s)	33, 352, 480, 633, 899
Hpy188III	TCNNGA	4 cut(s)	146, 263, 749, 842
Hpy8I	GTNNAC	3 cut(s)	131, 383, 460
HpyAV	CCTTC	8 cut(s)	322, 518, 698, 746, 760, 790, 818, 851
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	8 cut(s)	116, 251, 503, 563, 638, 653, 698, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 614
HpyF3I	CTNAG	5 cut(s)	87, 479, 519, 540, 774
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	1 cut(s)	657
Kzo9I	GATC	3 cut(s)	430, 692, 715
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	4 cut(s)	605, 740, 755, 890
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	3 cut(s)	520, 640, 790
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	92, 207
MalI	GATC	3 cut(s)	432, 694, 717
MboI	GATC	3 cut(s)	430, 692, 715
MboII	GAAGA	6 cut(s)	251, 337, 350, 484, 620, 830
MflI	RGATCY	1 cut(s)	715
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	34, 37, 44, 259, 383, 535, 730
Mph1103I	ATGCAT	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	6 cut(s)	42, 201, 233, 356, 414, 659
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	2 cut(s)	545, 614
NdeII	GATC	3 cut(s)	430, 692, 715
NlaIII	CATG	1 cut(s)	657
NlaIV	GGNNCC	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	1 cut(s)	657
NspV	TTCGAA	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	5 cut(s)	20, 34, 101, 239, 835
PkrI	GCNGC	2 cut(s)	115, 828
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	678
PspCI	CACGTG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	1 cut(s)	547
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
SalI	GTCGAC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	6 cut(s)	42, 201, 233, 356, 414, 659
SatI	GCNGC	2 cut(s)	114, 827
Sau3AI	GATC	3 cut(s)	430, 692, 715
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	680
SfaNI	GCATC	3 cut(s)	520, 640, 790
SfcI	CTRYAG	1 cut(s)	704
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SphI	GCATGC	1 cut(s)	657
SsiI	CCGC	3 cut(s)	533, 713, 826
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	4 cut(s)	130, 437, 691, 841
TauI	GCSGC	1 cut(s)	829
TfiI	GAWTC	5 cut(s)	20, 34, 101, 239, 835
Tru1I	TTAA	6 cut(s)	42, 201, 233, 356, 414, 659
Tru9I	TTAA	6 cut(s)	42, 201, 233, 356, 414, 659
TscAI	CASTG	2 cut(s)	130, 370
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	4 cut(s)	20, 351, 500, 545
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	2 cut(s)	130, 370
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	5 cut(s)	59, 245, 346, 581, 760
XceI	RCATGY	1 cut(s)	657
XmiI	GTMKAC	2 cut(s)	130, 382
XmnI	GAANNNNTTC	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.