Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014516

Physical Location & Seq

Genomic Coordinates Reverse (-)

3218951 .. 3221074

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGATGAGCCAAATCAGCCAAGACAACAATGAAAAGACACCTTTGCAAGCACGTTTAGACAAGCTAACTTCGTCCATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCCGATACTTCACAGGGAATACAGAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACAAAATCTGATGACATAATAAATGCCGTCATTGGGATTGTAGCAGCTGCCGTTACAATTGTTGTGGTGGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGTCAATAACGCAATGGTGCGGAAGCTCACTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACAGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTGACTAAGTTTTGGTTGGCGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTATGTTCTCGACTTGATCCAAGAAGGGGTTACTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCCGAAGTTGAGATCTCTGGCAGTCCAACGGAAAAGGCCATTCTTTCATGGGCGGTACATGGGTCAATGATGGATATGGAGAAAGTGGTGAAGACTAGTAGCATTCTCCACGTCGAAGCCTTTAATTCGAAGAAGAAACAGAGTGGAGTTCTGGTGAAGAGAAAGGCAGATAACTCCAGACATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATCTGCACAAGTTACTACAATGCTTCTGGACTTGTTAAGGATATGTATGTGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGCCTCAGATGCATAGCGTTTGCACATAAACAAGTTCCAGCAGAAGAGCGACTAAATGCAGACCAGAAATTTGTGTTAAAGGAAGATGGATTAACCCTATTGGGACTTGTGGGTCTTAAGGATCCATGCCGTCCAGGTGTGAAGAAAGCAGTTGAAGAATGTCAATATGCAGGGGTGAATGTCAAAATGATTACTGGCGACAATGTTTTCACGGCAAAAGCCATAGCTACTGAATGTGGAATACTCGGGGCTAGTCAGGACATGTTCGGAGGAGCAGTGATTGAAGGTGTGGAATTCCGCAACTACACGCCAGAAGAGAGATTGGAGAAAGTTGAAAAAATTTGTGTGATGGCCAGGTCTTCTCCTTTTGATAAGCTTCTAAAGGTGATTGAAGGTCATGTTGTTGCAGTTACCGGTGATGGCACCAATGATGCACCAGCACTGAAAGAAGATGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTGTGATCATAGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATCCAATTCCAGCTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTCGTAGCAGCAGTTTCAGCAGGTCAGGTCCCTTTAACAGCAGTTCAATTATTGTGGGTAAACTTGATCATGGACACACTTGGAGCTCTTGCTCTAGCCACAGAAAAACCGACAAGAGAACTTATGGAAAAGCCACCAGTGGGCAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACTGTTCTCTTGATCTTACAATTCAGGGGCAAAGCAATCTTCGGTGTCGGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGATCTTTAATGAGTTCAATGCAAGAAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACACACCAACAAGTTGTTTATGGGGATCATCGTGGTGACAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTTTGCATTGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTGTATTCCTGTTCCAGAGAAACCCATATTCAGCTATCTGAAGATGAAGAAAAATAAGCATTCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

707

Amino Acids

77.73

Weight (kDa)

8.59

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	128 - 443	4.3e-12	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	168 - 339	3.1e-27	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	517 - 686	9.1e-49	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34400
fragaria_vesca	FvH4_4g07550 FvH4_4g07550
malus_domestica	MD13G1244600.v1.1
prunus_persica	Prupe.1G079000_v2.0.a1
pyrus_communis	pycom13g21590
rosa_chinensis	RchiOBHm_Chr4g0400141
rosa_laevigata	RLG00000009209
rosa_multiflora	Rmu_sc0000037.1_g000017 Rmu_sc0023757.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345110
rosa_rugosa	Rorug04G0022600 Rorug04G0022600 Rorug04G0022700
rosa_samantha	Rh4BG096600 Rh4CG107900
rosa_wichuraiana	Rw4G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	993
Acc36I	ACCTGC	1 cut(s)	1532
AccB1I	GGYRCC	1 cut(s)	1304
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	3 cut(s)	343, 617, 1180
AclWI	GGATC	5 cut(s)	379, 502, 998, 1011, 1919
AcoI	YGGCCR	2 cut(s)	1233, 2033
AcsI	RAATTY	4 cut(s)	950, 1175, 1221, 1964
AcuI	CTGAAG	3 cut(s)	1404, 1919, 2114
AfaI	GTAC	8 cut(s)	176, 391, 406, 548, 621, 750, 1457, 1724
AfiI	CCNNNNNNNGG	4 cut(s)	222, 427, 517, 1661
AflII	CTTAAG	1 cut(s)	998
AflIII	ACRYGT	2 cut(s)	745, 1143
AgeI	ACCGGT	1 cut(s)	1295
AhlI	ACTAGT	1 cut(s)	659
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	1015, 1235
AleI	CACNNNNGTG	1 cut(s)	1817
Alw21I	GWGCWC	1 cut(s)	1609
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	5 cut(s)	379, 502, 998, 1011, 1919
Ama87I	CYCGRG	1 cut(s)	1127
AoxI	GGCC	4 cut(s)	551, 600, 1233, 2033
ApeKI	GCWGC	8 cut(s)	183, 233, 236, 764, 875, 882, 1505, 1529
ApoI	RAATTY	4 cut(s)	950, 1175, 1221, 1964
ArsI	GACNNNNNNTTYG	2 cut(s)	935, 967
AsiGI	ACCGGT	1 cut(s)	1295
Asp700I	GAANNNNTTC	1 cut(s)	1874
AspLEI	GCGC	1 cut(s)	1675
AspS9I	GGNCC	2 cut(s)	127, 1549
AsuHPI	GGTGA	9 cut(s)	442, 664, 730, 1069, 1279, 1310, 1483, 1793, 1933
AsuII	TTCGAA	1 cut(s)	692
AsuNHI	GCTAGC	1 cut(s)	878
AvaI	CYCGRG	1 cut(s)	1127
AvaII	GGWCC	2 cut(s)	127, 1549
BaeI	ACNNNNGTAYC	2 cut(s)	611, 644
BalI	TGGCCA	2 cut(s)	1235, 2035
BamHI	GGATCC	1 cut(s)	1003
BanI	GGYRCC	1 cut(s)	1304
BanII	GRGCYC	1 cut(s)	1609
BbsI	GAAGAC	3 cut(s)	662, 1233, 1867
Bbv12I	GWGCWC	1 cut(s)	1609
BbvI	GCAGC	8 cut(s)	195, 223, 245, 776, 887, 894, 1517, 1541
BccI	CCATC	6 cut(s)	316, 628, 962, 1225, 1295, 1939
BceAI	ACGGC	4 cut(s)	200, 224, 996, 1110
BciT130I	CCWGG	2 cut(s)	1017, 1237
BclI	TGATCA	3 cut(s)	1398, 1515, 1587
BcoDI	GTCTC	1 cut(s)	356
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	8 cut(s)	555, 660, 779, 879, 1134, 1616, 1859, 2048
BfmI	CTRYAG	1 cut(s)	1428
BfoI	RGCGCY	1 cut(s)	1676
BfrI	CTTAAG	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	1532
BglII	AGATCT	2 cut(s)	576, 1830
BisI	GCNGC	8 cut(s)	184, 234, 237, 765, 876, 883, 1506, 1530
BlsI	GCNGC	8 cut(s)	185, 235, 238, 766, 877, 884, 1507, 1531
Bme1390I	CCNGG	2 cut(s)	1017, 1237
Bme18I	GGWCC	2 cut(s)	127, 1549
BmeT110I	CYCGRG	1 cut(s)	1127
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	127, 1549
BmiI	GGNNCC	4 cut(s)	1005, 1306, 1551, 1703
BmrFI	CCNGG	2 cut(s)	1017, 1237
BmsI	GCATC	2 cut(s)	881, 1303
BmtI	GCTAGC	1 cut(s)	882
BpiI	GAAGAC	3 cut(s)	662, 1233, 1867
BpmI	CTGGAG	1 cut(s)	724
Bpu14I	TTCGAA	1 cut(s)	692
BpuEI	CTTGAG	2 cut(s)	1698, 1943
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	1295
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 1143, 1173
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 427, 517, 1661
Bse118I	RCCGGY	1 cut(s)	1295
Bse1I	ACTGG	4 cut(s)	541, 758, 1081, 1658
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	1017, 1237
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	160, 1476
BseLI	CCNNNNNNNGG	4 cut(s)	222, 427, 517, 1661
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	901, 1401
BseNI	ACTGG	4 cut(s)	541, 758, 1081, 1658
BseRI	GAGGAG	1 cut(s)	1167
BseXI	GCAGC	8 cut(s)	195, 223, 245, 776, 887, 894, 1517, 1541
BsgI	GTGCAG	1 cut(s)	772
BshFI	GGCC	4 cut(s)	553, 602, 1235, 2035
BshNI	GGYRCC	1 cut(s)	1304
BshTI	ACCGGT	1 cut(s)	1295
BsiHKAI	GWGCWC	1 cut(s)	1609
BsiHKCI	CYCGRG	1 cut(s)	1127
BsiSI	CCGG	1 cut(s)	1296
BslFI	GGGAC	3 cut(s)	999, 1535, 2007
BslI	CCNNNNNNNGG	4 cut(s)	222, 427, 517, 1661
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	3 cut(s)	999, 1535, 2007
BsmI	GAATGC	2 cut(s)	666, 2113
BsnI	GGCC	4 cut(s)	553, 602, 1235, 2035
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	1127
Bsp119I	TTCGAA	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	1609
Bsp1407I	TGTACA	4 cut(s)	389, 546, 748, 1455
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	3 cut(s)	343, 617, 1180
BspANI	GGCC	4 cut(s)	553, 602, 1235, 2035
BspCNI	CTCAG	2 cut(s)	900, 1400
BspLI	GGNNCC	4 cut(s)	1005, 1306, 1551, 1703
BspMI	ACCTGC	1 cut(s)	1532
BspOI	GCTAGC	1 cut(s)	882
BspPI	GGATC	5 cut(s)	379, 502, 998, 1011, 1919
BspQI	GCTCTTC	1 cut(s)	921
BspT104I	TTCGAA	1 cut(s)	692
BspT107I	GGYRCC	1 cut(s)	1304
BspTI	CTTAAG	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	1295
BsrGI	TGTACA	4 cut(s)	389, 546, 748, 1455
BsrI	ACTGG	4 cut(s)	541, 758, 1081, 1658
BssAI	RCCGGY	1 cut(s)	1295
BssECI	CCNNGG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	1017, 1237
Bst4CI	ACNGT	4 cut(s)	1432, 1495, 1722, 1735
Bst6I	CTCTTC	4 cut(s)	308, 716, 921, 1191
BstAFI	CTTAAG	1 cut(s)	998
BstAUI	TGTACA	4 cut(s)	389, 546, 748, 1455
BstBI	TTCGAA	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	48, 880
BstDEI	CTNAG	3 cut(s)	435, 887, 1387
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	160, 1476
BstH2I	RGCGCY	1 cut(s)	1676
BstHHI	GCGC	1 cut(s)	1675
BstMAI	GTCTC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 891, 1424, 1538
BstNI	CCWGG	2 cut(s)	1017, 1237
BstNSI	RCATGY	2 cut(s)	749, 1147
BstSCI	CCNGG	2 cut(s)	1015, 1235
BstSFI	CTRYAG	1 cut(s)	1428
BstV1I	GCAGC	8 cut(s)	195, 223, 245, 776, 887, 894, 1517, 1541
BstV2I	GAAGAC	3 cut(s)	662, 1233, 1867
BstX2I	RGATCY	4 cut(s)	371, 576, 1003, 1830
BstXI	CCANNNNNNTGG	1 cut(s)	2043
BstYI	RGATCY	4 cut(s)	371, 576, 1003, 1830
BsuRI	GGCC	4 cut(s)	553, 602, 1235, 2035
BtgI	CCRYGG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	2 cut(s)	160, 1476
BtsI	GCAGTG	2 cut(s)	351, 1164
BtsIMutI	CAGTG	6 cut(s)	351, 751, 1164, 1322, 1665, 1718
BveI	ACCTGC	1 cut(s)	1532
Cac8I	GCNNGC	2 cut(s)	48, 880
CfoI	GCGC	1 cut(s)	1675
Cfr10I	RCCGGY	1 cut(s)	1295
Cfr13I	GGNCC	2 cut(s)	127, 1549
Csp6I	GTAC	8 cut(s)	175, 390, 405, 547, 620, 749, 1456, 1723
CspAI	ACCGGT	1 cut(s)	1295
CspCI	CAANNNNNGTGG	4 cut(s)	234, 269, 1556, 1591
CviQI	GTAC	8 cut(s)	175, 390, 405, 547, 620, 749, 1456, 1723
DdeI	CTNAG	3 cut(s)	435, 887, 1387
DrdI	GACNNNNNNGTC	1 cut(s)	993
DseDI	GACNNNNNNGTC	1 cut(s)	993
EaeI	YGGCCR	2 cut(s)	1233, 2033
Eam1104I	CTCTTC	4 cut(s)	308, 716, 921, 1191
EarI	CTCTTC	4 cut(s)	308, 716, 921, 1191
Ecl136II	GAGCTC	1 cut(s)	1607
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	1609
Eco31I	GGTCTC	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	127, 1549
Eco53kI	GAGCTC	1 cut(s)	1607
Eco57I	CTGAAG	3 cut(s)	1404, 1919, 2114
Eco88I	CYCGRG	1 cut(s)	1127
EcoICRI	GAGCTC	1 cut(s)	1607
EcoO109I	RGGNCCY	1 cut(s)	1549
EcoRI	GAATTC	1 cut(s)	1175
EcoRII	CCWGG	2 cut(s)	1015, 1235
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	896
EcoT38I	GRGCYC	1 cut(s)	1609
ErhI	CCWWGG	1 cut(s)	366
FalI	AAGNNNNNCTT	2 cut(s)	1859, 1891
FaqI	GGGAC	3 cut(s)	999, 1535, 2007
FbaI	TGATCA	3 cut(s)	1398, 1515, 1587
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	8 cut(s)	184, 234, 237, 765, 876, 883, 1506, 1530
FokI	GGATG	2 cut(s)	167, 1463
FriOI	GRGCYC	1 cut(s)	1609
Fsp4HI	GCNGC	8 cut(s)	184, 234, 237, 765, 876, 883, 1506, 1530
FspBI	CTAG	8 cut(s)	555, 660, 779, 879, 1134, 1616, 1859, 2048
GlaI	GCGC	1 cut(s)	1674
GluI	GCNGC	8 cut(s)	184, 234, 237, 765, 876, 883, 1506, 1530
GsuI	CTGGAG	1 cut(s)	724
HaeII	RGCGCY	1 cut(s)	1676
HaeIII	GGCC	4 cut(s)	553, 602, 1235, 2035
HapII	CCGG	1 cut(s)	1296
HhaI	GCGC	1 cut(s)	1675
Hin6I	GCGC	1 cut(s)	1673
HinP1I	GCGC	1 cut(s)	1673
HindIII	AAGCTT	2 cut(s)	471, 1256
HinfI	GANTC	4 cut(s)	289, 455, 563, 1357
HpaII	CCGG	1 cut(s)	1296
HphI	GGTGA	9 cut(s)	442, 664, 730, 1069, 1279, 1310, 1483, 1793, 1933
Hpy166II	GTNNAC	5 cut(s)	275, 547, 751, 1456, 1582
Hpy188I	TCNGA	8 cut(s)	131, 199, 411, 568, 890, 1151, 1390, 2094
Hpy188III	TCNNGA	9 cut(s)	266, 500, 741, 810, 1139, 1468, 1741, 1960, 2069
Hpy8I	GTNNAC	5 cut(s)	275, 547, 751, 1456, 1582
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	5 cut(s)	263, 421, 509, 1160, 1268
HpyCH4III	ACNGT	4 cut(s)	1432, 1495, 1722, 1735
HpyCH4IV	ACGT	2 cut(s)	52, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 891, 1424, 1538
HpyF3I	CTNAG	3 cut(s)	435, 887, 1387
HpySE526I	ACGT	2 cut(s)	52, 675
HspAI	GCGC	1 cut(s)	1673
Ksp22I	TGATCA	3 cut(s)	1398, 1515, 1587
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	3 cut(s)	761, 1154, 1604
Lsp1109I	GCAGC	8 cut(s)	195, 223, 245, 776, 887, 894, 1517, 1541
LweI	GCATC	2 cut(s)	881, 1303
MaeI	CTAG	8 cut(s)	555, 660, 779, 879, 1134, 1616, 1859, 2048
MaeII	ACGT	2 cut(s)	52, 675
MaeIII	GTNAC	7 cut(s)	241, 286, 430, 520, 794, 1291, 1921
MfeI	CAATTG	3 cut(s)	246, 1926, 2037
MflI	RGATCY	4 cut(s)	371, 576, 1003, 1830
MhlI	GDGCHC	1 cut(s)	1609
MlsI	TGGCCA	2 cut(s)	1235, 2035
MluNI	TGGCCA	2 cut(s)	1235, 2035
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	9 cut(s)	145, 896, 1145, 1686, 1692, 1715, 1722, 1945, 1974
Mox20I	TGGCCA	2 cut(s)	1235, 2035
Mph1103I	ATGCAT	1 cut(s)	896
MroXI	GAANNNNTTC	1 cut(s)	1874
MscI	TGGCCA	2 cut(s)	1235, 2035
MseI	TTAA	7 cut(s)	687, 819, 959, 974, 999, 1556, 1836
MslI	CAYNNNNRTG	2 cut(s)	1817, 1919
Msp20I	TGGCCA	2 cut(s)	1235, 2035
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	998
MspI	CCGG	1 cut(s)	1296
MspR9I	CCNGG	2 cut(s)	1017, 1237
MunI	CAATTG	3 cut(s)	246, 1926, 2037
Mva1269I	GAATGC	2 cut(s)	666, 2113
MvaI	CCWGG	2 cut(s)	1017, 1237
MwoI	GCNNNNNNNGC	4 cut(s)	15, 891, 1424, 1538
NcoI	CCATGG	1 cut(s)	366
NheI	GCTAGC	1 cut(s)	878
NlaIV	GGNNCC	4 cut(s)	1005, 1306, 1551, 1703
NmuCI	GTSAC	3 cut(s)	286, 430, 1921
NsiI	ATGCAT	1 cut(s)	896
NspI	RCATGY	2 cut(s)	749, 1147
NspV	TTCGAA	1 cut(s)	692
OliI	CACNNNNGTG	1 cut(s)	1817
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	2 cut(s)	745, 1143
PciSI	GCTCTTC	1 cut(s)	921
PctI	GAATGC	2 cut(s)	666, 2113
PdmI	GAANNNNTTC	1 cut(s)	1874
PfeI	GAWTC	3 cut(s)	455, 563, 1357
PinAI	ACCGGT	1 cut(s)	1295
PkrI	GCNGC	8 cut(s)	185, 235, 238, 766, 877, 884, 1507, 1531
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	1549
PscI	ACATGT	2 cut(s)	745, 1143
Psp124BI	GAGCTC	1 cut(s)	1609
Psp5II	RGGWCCY	1 cut(s)	1549
Psp6I	CCWGG	2 cut(s)	1015, 1235
PspGI	CCWGG	2 cut(s)	1015, 1235
PspN4I	GGNNCC	4 cut(s)	1005, 1306, 1551, 1703
PspPI	GGNCC	2 cut(s)	127, 1549
PspPPI	RGGWCCY	1 cut(s)	1549
PsuI	RGATCY	4 cut(s)	371, 576, 1003, 1830
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	8 cut(s)	176, 391, 406, 548, 621, 750, 1457, 1724
RsaNI	GTAC	8 cut(s)	175, 390, 405, 547, 620, 749, 1456, 1723
RseI	CAYNNNNRTG	2 cut(s)	1817, 1919
SacI	GAGCTC	1 cut(s)	1609
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	7 cut(s)	687, 819, 959, 974, 999, 1556, 1836
SatI	GCNGC	8 cut(s)	184, 234, 237, 765, 876, 883, 1506, 1530
Sau96I	GGNCC	2 cut(s)	127, 1549
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	1017, 1237
SduI	GDGCHC	1 cut(s)	1609
SfaNI	GCATC	2 cut(s)	881, 1303
SfcI	CTRYAG	1 cut(s)	1428
SfuI	TTCGAA	1 cut(s)	692
SinI	GGWCC	2 cut(s)	127, 1549
SmiMI	CAYNNNNRTG	2 cut(s)	1817, 1919
SmlI	CTYRAG	3 cut(s)	998, 1713, 1958
SmoI	CTYRAG	3 cut(s)	998, 1713, 1958
SpeI	ACTAGT	1 cut(s)	659
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	343, 617, 1180
SspMI	CTAG	8 cut(s)	555, 660, 779, 879, 1134, 1616, 1859, 2048
SstI	GAGCTC	1 cut(s)	1609
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	1015, 1235
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	4 cut(s)	1432, 1495, 1722, 1735
TaiI	ACGT	2 cut(s)	55, 678
TaqI	TCGA	3 cut(s)	501, 678, 692
TatI	WGTACW	5 cut(s)	174, 389, 546, 748, 1455
TfiI	GAWTC	3 cut(s)	455, 563, 1357
Tru1I	TTAA	7 cut(s)	687, 819, 959, 974, 999, 1556, 1836
Tru9I	TTAA	7 cut(s)	687, 819, 959, 974, 999, 1556, 1836
TscAI	CASTG	6 cut(s)	358, 758, 1164, 1329, 1665, 1725
TseFI	GTSAC	3 cut(s)	286, 430, 1921
TseI	GCWGC	8 cut(s)	183, 233, 236, 764, 875, 882, 1505, 1529
Tsp45I	GTSAC	3 cut(s)	286, 430, 1921
TspDTI	ATGAA	9 cut(s)	45, 326, 431, 440, 468, 600, 852, 1465, 2114
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	6 cut(s)	358, 758, 1164, 1329, 1665, 1725
Vha464I	CTTAAG	1 cut(s)	998
VpaK11BI	GGWCC	2 cut(s)	127, 1549
XapI	RAATTY	4 cut(s)	950, 1175, 1221, 1964
XceI	RCATGY	2 cut(s)	749, 1147
XmiI	GTMKAC	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	1874
XspI	CTAG	8 cut(s)	555, 660, 779, 879, 1134, 1616, 1859, 2048
Zsp2I	ATGCAT	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.