Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0014516

Physical Location & Seq

Genomic Coordinates Reverse (-)

17822202 .. 17825784

Gene Structure 3583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1848 bp

ATGCTTAGACCCAAAGCCCCTTCACACCTTATTCCCCGCCAAATCCCTTTTGAAAATCTCAATCCCCATACCCCAAACCAGTTCCTATCTCTCTCGGGAAAGCTCATATACCTCTTGAAACAATGCGTCTCCACCAAAGAGCTGAAACAAATCCACACCCAAATGCTCATAAACTCCATACACAAACCCAACTTCCTCCTCCCCAAAATCATAGACCTCAAAGACTTCACCTACGCCTACACCCTCTTCTCCCACATCCCCGAACCCAATGGCTACGCTTTCAACGTCATGCTCCGTGGCCTAACCACCACTTGGCAAAAGTACCCACTTACTCTTCAACTCTATTACCGAATGAAGTCTCTGGGTGTGATGCCGGATAATTTCACCTACCCATTTCTCTTCATTGCGTGTTGGAATCTCTCGGAGCTCAATCATGGCCGTGCAGCACATTCATCTGTGTTGAAGACTGGGTTGGACGGTGATGGTCATGTGTGTCACTCTCTGATCACAATGTACTCGATGTGTGGGGAACTGGGTTATGCACGGAAGGTGTTCGATGAAATTCCCCAGAGAGATTCGGTGTCGTGGAACTCGATGATTTCTGGGTATACGAAGATGGGGCGTGCAGGGGATGCGGTGGGGTTGTTTGGGGAGATGAGGGAGGCTGGATTTGAGCCGAATGAGATGACTCTGGTGAGTGTTCTCGGGGCGTGCGGGGACCTTGGGGATTTGAGCTTGGGGAGGTGGGTGGAGGATTTTGTTGTTGATAAAAAGTTGCAGCTGAATTCTTATTTGGGGTCTGCGTTGATTGGTATGTTTGGAAAGTGTGGTGATTTGTGTTCGGCAAGGAGGGTGTTTGACAGTATGAAGAAAAAGGATCGCGTCACTTGGAATGCTATGATTACTGGGTATGCTCAAAACGGAATGTCAGATGAAGCAATGGTGCTTTTTGATGGAATGAAAGAAGCAGGTGTTATCCCTGATAAAATCACACTGGTTGGAATGTTGTCTGCATGTGCTGCAATTGGTGCCCTAGATTTGGGGAGATGGATTGACAAATATGCATCTGAAAGGGACTTCCAACATGACATTTATGTTGCTACTGCATTAGTTGATATGTATGCTAAGTGTGGCAGCTTAGCCAATGCACTAAGAGTTTTTGAAGACATGCCCCAGAAAAATGAGGTTTCTTGGAATGCCATGATATCTGCCCTTGCTTTCCATGGGAGAGCCCATGAAGCAATATCCCTATTTGAGCGTATGACAGAAGAAGTTGGGGCTGCTCGGCCAAATGACATCACGTTTGTTGCAGTACTTTCTGCCTGTGTTCATGTTGGACTAGTCGATGAGGGCCGTCGATTGTTTGATTTAATGAGCTCATCATTTGGGCTGGTTCCAAAAGTAGAGCATTATTCTTGCATGGTTGACCTTTTGTCACGTGCAGGATGCGTACATGAAGCTTGGGATTTCATCAAGAAAATGCCTGAAAAACCAGATGAAGTTACACTGGGAGCGTTACTTGGTGCCTGTCGGAAATGTGGAAATGTAGATATCACTGAACAGGTAGTGCAGCTGCTTCTAGAATTGGAGCCTTCAAACTCCGGAAACTATGTTATCTCCTCAAAGATCTATGCGGGCTTAAAAATGTGGGATGACTCAGCAAGGATGAGAGTGTTGATGAGACAAAGGGGTGTCAGCAAGACTCCTGGCTGTAGCTGGATTGAGACAGAGAATCAACTTCATGAGTTTCACGCCGGTGATAATTTAGAAGAGATCTCTCAGGTACTTAAAGTATTATATGAGGATTTGAAGGATGAAGGTTACATACCAAACATTAATGCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

615

Amino Acids

68.72

Weight (kDa)

5.97

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	192 - 238	5.5e-11	PPR repeat family
PPR	PF01535	194 - 224	5.7e-09	PPR repeat
PPR_2	PF13041	293 - 340	2.5e-12	PPR repeat family
PPR_1	PF12854	293 - 321	1.5e-06	PPR repeat
PPR	PF01535	295 - 325	4.4e-10	PPR repeat
PPR_2	PF13041	394 - 443	4.9e-08	PPR repeat family
PPR	PF01535	396 - 423	3.3e-07	PPR repeat
E_motif	PF20431	515 - 575	1e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34400
fragaria_vesca	FvH4_4g07550 FvH4_4g07550
malus_domestica	MD13G1244600.v1.1
prunus_persica	Prupe.1G079000_v2.0.a1
pyrus_communis	pycom13g21590
rosa_chinensis	RchiOBHm_Chr4g0400141
rosa_laevigata	RLG00000009209
rosa_multiflora	Rmu_sc0000037.1_g000017 Rmu_sc0023757.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345110
rosa_rugosa	Rorug04G0022600 Rorug04G0022600 Rorug04G0022700
rosa_samantha	Rh4BG096600 Rh4CG107900
rosa_wichuraiana	Rw4G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	959
Acc36I	ACCTGC	1 cut(s)	959
AccB1I	GGYRCC	2 cut(s)	1028, 1523
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	608
AccII	CGCG	1 cut(s)	882
AccIII	TCCGGA	1 cut(s)	1601
AciI	CCGC	4 cut(s)	37, 635, 714, 1634
AclWI	GGATC	1 cut(s)	885
AcoI	YGGCCR	2 cut(s)	436, 1286
AcsI	RAATTY	2 cut(s)	561, 784
AcvI	CACGTG	1 cut(s)	1439
AfaI	GTAC	5 cut(s)	323, 515, 1314, 1452, 1785
AfiI	CCNNNNNNNGG	2 cut(s)	312, 1039
AgsI	TTSAA	8 cut(s)	53, 118, 283, 338, 463, 1163, 1596, 1810
AhdI	GACNNNNNGTC	1 cut(s)	1432
AhlI	ACTAGT	1 cut(s)	1339
AjnI	CCWGG	1 cut(s)	1705
AjuI	GAANNNNNNNTTGG	4 cut(s)	455, 487, 776, 808
AleI	CACNNNNGTG	1 cut(s)	1755
Alw21I	GWGCWC	2 cut(s)	429, 1379
Alw26I	GTCTC	4 cut(s)	133, 363, 1675, 1718
AlwI	GGATC	1 cut(s)	885
Ama87I	CYCGRG	2 cut(s)	94, 704
Aor13HI	TCCGGA	1 cut(s)	1601
AoxI	GGCC	4 cut(s)	298, 436, 1286, 1351
ApeKI	GCWGC	7 cut(s)	443, 778, 1019, 1134, 1280, 1570, 1573
ApoI	RAATTY	2 cut(s)	561, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	1286, 1318
AseI	ATTAAT	1 cut(s)	1836
Asp700I	GAANNNNTTC	1 cut(s)	551
AspS9I	GGNCC	2 cut(s)	718, 1351
AsuHPI	GGTGA	6 cut(s)	220, 376, 491, 706, 842, 1769
AvaI	CYCGRG	2 cut(s)	94, 704
AvaII	GGWCC	1 cut(s)	718
BaeGI	GKGCMC	1 cut(s)	1033
BanI	GGYRCC	2 cut(s)	1028, 1523
BanII	GRGCYC	3 cut(s)	429, 1234, 1379
BarI	GAAGNNNNNNTAC	2 cut(s)	1809, 1841
BbrPI	CACGTG	1 cut(s)	1439
BbsI	GAAGAC	2 cut(s)	470, 1170
Bbv12I	GWGCWC	2 cut(s)	429, 1379
BbvI	GCAGC	7 cut(s)	455, 790, 1006, 1146, 1267, 1560, 1582
BccI	CCATC	4 cut(s)	476, 610, 947, 1041
BceAI	ACGGC	2 cut(s)	423, 1338
BciT130I	CCWGG	1 cut(s)	1707
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	133, 363, 1675, 1718
BcuI	ACTAGT	1 cut(s)	1339
BfaI	CTAG	4 cut(s)	1034, 1340, 1580, 1846
BfmI	CTRYAG	1 cut(s)	1711
BfuAI	ACCTGC	1 cut(s)	959
BglII	AGATCT	2 cut(s)	1626, 1773
BisI	GCNGC	7 cut(s)	444, 779, 1020, 1135, 1281, 1571, 1574
BlpI	GCTNAGC	1 cut(s)	1138
BlsI	GCNGC	7 cut(s)	445, 780, 1021, 1136, 1282, 1572, 1575
BmcAI	AGTACT	1 cut(s)	1314
Bme1390I	CCNGG	1 cut(s)	1707
Bme18I	GGWCC	1 cut(s)	718
BmeRI	GACNNNNNGTC	1 cut(s)	1432
BmeT110I	CYCGRG	2 cut(s)	94, 704
BmgT120I	GGNCC	2 cut(s)	718, 1351
BmiI	GGNNCC	5 cut(s)	719, 1030, 1395, 1525, 1590
BmrFI	CCNGG	1 cut(s)	1707
BmrI	ACTGGG	4 cut(s)	477, 542, 915, 1517
BmsI	GCATC	4 cut(s)	360, 622, 1073, 1436
BmuI	ACTGGG	4 cut(s)	477, 542, 915, 1517
BpiI	GAAGAC	2 cut(s)	470, 1170
Bpu1102I	GCTNAGC	1 cut(s)	1138
BsaAI	YACGTR	1 cut(s)	1439
BsaJI	CCNNGG	3 cut(s)	295, 721, 1222
BsaWI	WCCGGW	1 cut(s)	1601
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 1039
Bse118I	RCCGGY	1 cut(s)	1754
Bse1I	ACTGG	6 cut(s)	79, 472, 537, 910, 999, 1512
Bse3DI	GCAATG	2 cut(s)	402, 945
BseAI	TCCGGA	1 cut(s)	1601
BseBI	CCWGG	1 cut(s)	1707
BseDI	CCNNGG	3 cut(s)	295, 721, 1222
BseGI	GGATG	6 cut(s)	255, 637, 1451, 1657, 1671, 1819
BseLI	CCNNNNNNNGG	2 cut(s)	312, 1039
BseMI	GCAATG	2 cut(s)	402, 945
BseMII	CTCAG	2 cut(s)	1671, 1793
BseNI	ACTGG	6 cut(s)	79, 472, 537, 910, 999, 1512
BseRI	GAGGAG	2 cut(s)	188, 1609
BseSI	GKGCMC	1 cut(s)	1033
BseXI	GCAGC	7 cut(s)	455, 790, 1006, 1146, 1267, 1560, 1582
BsgI	GTGCAG	4 cut(s)	462, 645, 1461, 1589
Bsh1236I	CGCG	1 cut(s)	882
BshFI	GGCC	4 cut(s)	300, 438, 1288, 1353
BshNI	GGYRCC	2 cut(s)	1028, 1523
BsiHKAI	GWGCWC	2 cut(s)	429, 1379
BsiHKCI	CYCGRG	2 cut(s)	94, 704
BsiSI	CCGG	3 cut(s)	374, 1602, 1755
BslFI	GGGAC	2 cut(s)	731, 1088
BslI	CCNNNNNNNGG	2 cut(s)	312, 1039
BsmAI	GTCTC	4 cut(s)	133, 363, 1675, 1718
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	731, 1088
BsmI	GAATGC	2 cut(s)	898, 1201
BsnI	GGCC	4 cut(s)	300, 438, 1288, 1353
BsoBI	CYCGRG	2 cut(s)	94, 704
Bsp1286I	GDGCHC	4 cut(s)	429, 1033, 1234, 1379
Bsp13I	TCCGGA	1 cut(s)	1601
Bsp143I	GATC	4 cut(s)	504, 877, 1626, 1773
Bsp1720I	GCTNAGC	1 cut(s)	1138
Bsp19I	CCATGG	1 cut(s)	1222
BspACI	CCGC	4 cut(s)	37, 635, 714, 1634
BspANI	GGCC	4 cut(s)	300, 438, 1288, 1353
BspCNI	CTCAG	2 cut(s)	1670, 1792
BspEI	TCCGGA	1 cut(s)	1601
BspFNI	CGCG	1 cut(s)	882
BspHI	TCATGA	1 cut(s)	1741
BspLI	GGNNCC	5 cut(s)	719, 1030, 1395, 1525, 1590
BspMI	ACCTGC	1 cut(s)	959
BspPI	GGATC	1 cut(s)	885
BspT107I	GGYRCC	2 cut(s)	1028, 1523
BsrDI	GCAATG	2 cut(s)	402, 945
BsrFI	RCCGGY	1 cut(s)	1754
BsrI	ACTGG	6 cut(s)	79, 472, 537, 910, 999, 1512
BssAI	RCCGGY	1 cut(s)	1754
BssECI	CCNNGG	3 cut(s)	295, 721, 1222
BssMI	GATC	4 cut(s)	504, 877, 1626, 1773
BssNAI	GTATAC	1 cut(s)	609
BssT1I	CCWWGG	2 cut(s)	721, 1222
Bst1107I	GTATAC	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	1707
Bst4CI	ACNGT	2 cut(s)	479, 863
Bst6I	CTCTTC	4 cut(s)	251, 339, 404, 1764
BstAPI	GCANNNNNTGC	3 cut(s)	632, 1019, 1028
BstBAI	YACGTR	1 cut(s)	1439
BstC8I	GCNNGC	3 cut(s)	624, 712, 1636
BstDEI	CTNAG	6 cut(s)	5, 1125, 1138, 1151, 1657, 1779
BstDSI	CCRYGG	2 cut(s)	295, 1222
BstF5I	GGATG	6 cut(s)	255, 637, 1451, 1657, 1671, 1819
BstFNI	CGCG	1 cut(s)	882
BstKTI	GATC	4 cut(s)	507, 880, 1629, 1776
BstMAI	GTCTC	4 cut(s)	133, 363, 1675, 1718
BstMBI	GATC	4 cut(s)	504, 877, 1626, 1773
BstMWI	GCNNNNNNNGC	4 cut(s)	632, 1019, 1028, 1238
BstNI	CCWGG	1 cut(s)	1707
BstNSI	RCATGY	2 cut(s)	1017, 1171
BstSCI	CCNGG	1 cut(s)	1705
BstSFI	CTRYAG	1 cut(s)	1711
BstSLI	GKGCMC	1 cut(s)	1033
BstUI	CGCG	1 cut(s)	882
BstV1I	GCAGC	7 cut(s)	455, 790, 1006, 1146, 1267, 1560, 1582
BstV2I	GAAGAC	2 cut(s)	470, 1170
BstX2I	RGATCY	2 cut(s)	1626, 1773
BstYI	RGATCY	2 cut(s)	1626, 1773
BstZ17I	GTATAC	1 cut(s)	609
BsuRI	GGCC	4 cut(s)	300, 438, 1288, 1353
BtgI	CCRYGG	2 cut(s)	295, 1222
BtsCI	GGATG	6 cut(s)	255, 637, 1451, 1657, 1671, 1819
BtsIMutI	CAGTG	3 cut(s)	992, 1505, 1554
BveI	ACCTGC	1 cut(s)	959
Cac8I	GCNNGC	3 cut(s)	624, 712, 1636
CciI	TCATGA	1 cut(s)	1741
Cfr10I	RCCGGY	1 cut(s)	1754
Cfr13I	GGNCC	2 cut(s)	718, 1351
CseI	GACGC	2 cut(s)	115, 871
Csp6I	GTAC	5 cut(s)	322, 514, 1313, 1451, 1784
CviQI	GTAC	5 cut(s)	322, 514, 1313, 1451, 1784
DdeI	CTNAG	6 cut(s)	5, 1125, 1138, 1151, 1657, 1779
DpnI	GATC	4 cut(s)	506, 879, 1628, 1775
DpnII	GATC	4 cut(s)	504, 877, 1626, 1773
DriI	GACNNNNNGTC	1 cut(s)	1432
EaeI	YGGCCR	2 cut(s)	436, 1286
Eam1104I	CTCTTC	4 cut(s)	251, 339, 404, 1764
Eam1105I	GACNNNNNGTC	1 cut(s)	1432
EarI	CTCTTC	4 cut(s)	251, 339, 404, 1764
Ecl136II	GAGCTC	2 cut(s)	427, 1377
Eco130I	CCWWGG	2 cut(s)	721, 1222
Eco24I	GRGCYC	3 cut(s)	429, 1234, 1379
Eco32I	GATATC	2 cut(s)	1206, 1552
Eco47I	GGWCC	1 cut(s)	718
Eco53kI	GAGCTC	2 cut(s)	427, 1377
Eco72I	CACGTG	1 cut(s)	1439
Eco88I	CYCGRG	2 cut(s)	94, 704
EcoICRI	GAGCTC	2 cut(s)	427, 1377
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	1705
EcoRV	GATATC	2 cut(s)	1206, 1552
EcoT14I	CCWWGG	2 cut(s)	721, 1222
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	3 cut(s)	429, 1234, 1379
ErhI	CCWWGG	2 cut(s)	721, 1222
Esp3I	CGTCTC	1 cut(s)	133
FaqI	GGGAC	2 cut(s)	731, 1088
FauI	CCCGC	3 cut(s)	44, 707, 1627
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	7 cut(s)	444, 779, 1020, 1135, 1281, 1571, 1574
FokI	GGATG	6 cut(s)	242, 644, 1458, 1664, 1678, 1826
FriOI	GRGCYC	3 cut(s)	429, 1234, 1379
Fsp4HI	GCNGC	7 cut(s)	444, 779, 1020, 1135, 1281, 1571, 1574
FspBI	CTAG	4 cut(s)	1034, 1340, 1580, 1846
GluI	GCNGC	7 cut(s)	444, 779, 1020, 1135, 1281, 1571, 1574
HaeIII	GGCC	4 cut(s)	300, 438, 1288, 1353
HapII	CCGG	3 cut(s)	374, 1602, 1755
HgaI	GACGC	2 cut(s)	115, 871
HincII	GTYRAC	1 cut(s)	1426
HindII	GTYRAC	1 cut(s)	1426
HindIII	AAGCTT	1 cut(s)	1458
HinfI	GANTC	6 cut(s)	415, 575, 688, 1655, 1702, 1732
HpaII	CCGG	3 cut(s)	374, 1602, 1755
HphI	GGTGA	6 cut(s)	220, 376, 491, 706, 842, 1769
Hpy166II	GTNNAC	2 cut(s)	609, 1426
Hpy188I	TCNGA	5 cut(s)	424, 504, 931, 1069, 1533
Hpy188III	TCNNGA	6 cut(s)	96, 115, 1474, 1580, 1602, 1742
Hpy8I	GTNNAC	2 cut(s)	609, 1426
Hpy99I	CGWCG	1 cut(s)	1359
HpyAV	CCTTC	5 cut(s)	30, 541, 1602, 1804, 1811
HpyCH4III	ACNGT	2 cut(s)	479, 863
HpyCH4IV	ACGT	3 cut(s)	285, 1301, 1438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	632, 1019, 1028, 1238
HpyF3I	CTNAG	6 cut(s)	5, 1125, 1138, 1151, 1657, 1779
HpySE526I	ACGT	3 cut(s)	285, 1301, 1438
Kpn2I	TCCGGA	1 cut(s)	1601
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	504, 877, 1626, 1773
LmnI	GCTCC	4 cut(s)	297, 424, 1511, 1588
Lsp1109I	GCAGC	7 cut(s)	455, 790, 1006, 1146, 1267, 1560, 1582
LweI	GCATC	4 cut(s)	360, 622, 1073, 1436
MaeI	CTAG	4 cut(s)	1034, 1340, 1580, 1846
MaeII	ACGT	3 cut(s)	285, 1301, 1438
MaeIII	GTNAC	6 cut(s)	494, 883, 1434, 1501, 1515, 1820
MalI	GATC	4 cut(s)	506, 879, 1628, 1775
MboI	GATC	4 cut(s)	504, 877, 1626, 1773
MboII	GAAGA	9 cut(s)	238, 326, 391, 475, 625, 880, 1175, 1280, 1781
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	2 cut(s)	1626, 1773
MhlI	GDGCHC	4 cut(s)	429, 1033, 1234, 1379
MluCI	AATT	6 cut(s)	379, 561, 784, 1023, 1583, 1762
MlyI	GAGTC	3 cut(s)	682, 1649, 1696
MmeI	TCCRAC	6 cut(s)	392, 453, 979, 1105, 1315, 1511
Mph1103I	ATGCAT	1 cut(s)	1066
MroI	TCCGGA	1 cut(s)	1601
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	4 cut(s)	1370, 1640, 1788, 1836
MslI	CAYNNNNRTG	3 cut(s)	161, 438, 1755
MspA1I	CMGCKG	2 cut(s)	781, 1573
MspI	CCGG	3 cut(s)	374, 1602, 1755
MspR9I	CCNGG	1 cut(s)	1707
MunI	CAATTG	1 cut(s)	1023
Mva1269I	GAATGC	2 cut(s)	898, 1201
MvaI	CCWGG	1 cut(s)	1707
MvnI	CGCG	1 cut(s)	882
MwoI	GCNNNNNNNGC	4 cut(s)	632, 1019, 1028, 1238
NcoI	CCATGG	1 cut(s)	1222
NdeII	GATC	4 cut(s)	504, 877, 1626, 1773
NlaIV	GGNNCC	5 cut(s)	719, 1030, 1395, 1525, 1590
NmeAIII	GCCGAG	1 cut(s)	1264
NmuCI	GTSAC	3 cut(s)	494, 883, 1434
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	2 cut(s)	1017, 1171
OliI	CACNNNNGTG	1 cut(s)	1755
PagI	TCATGA	1 cut(s)	1741
PaqCI	CACCTGC	1 cut(s)	959
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 590
PctI	GAATGC	2 cut(s)	898, 1201
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	415, 575, 1732
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	7 cut(s)	445, 780, 1021, 1136, 1282, 1572, 1575
PleI	GAGTC	3 cut(s)	682, 1649, 1696
PmaCI	CACGTG	1 cut(s)	1439
PmlI	CACGTG	1 cut(s)	1439
PpsI	GAGTC	3 cut(s)	682, 1649, 1696
Ppu21I	YACGTR	1 cut(s)	1439
PpuMI	RGGWCCY	1 cut(s)	718
PshBI	ATTAAT	1 cut(s)	1836
Psp124BI	GAGCTC	2 cut(s)	429, 1379
Psp5II	RGGWCCY	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	1705
PspCI	CACGTG	1 cut(s)	1439
PspGI	CCWGG	1 cut(s)	1705
PspN4I	GGNNCC	5 cut(s)	719, 1030, 1395, 1525, 1590
PspPI	GGNCC	2 cut(s)	718, 1351
PspPPI	RGGWCCY	1 cut(s)	718
PsuI	RGATCY	2 cut(s)	1626, 1773
PvuII	CAGCTG	2 cut(s)	781, 1573
RsaI	GTAC	5 cut(s)	323, 515, 1314, 1452, 1785
RsaNI	GTAC	5 cut(s)	322, 514, 1313, 1451, 1784
RseI	CAYNNNNRTG	3 cut(s)	161, 438, 1755
SacI	GAGCTC	2 cut(s)	429, 1379
SaqAI	TTAA	4 cut(s)	1370, 1640, 1788, 1836
SatI	GCNGC	7 cut(s)	444, 779, 1020, 1135, 1281, 1571, 1574
Sau3AI	GATC	4 cut(s)	504, 877, 1626, 1773
Sau96I	GGNCC	2 cut(s)	718, 1351
ScaI	AGTACT	1 cut(s)	1314
SchI	GAGTC	3 cut(s)	682, 1649, 1696
ScrFI	CCNGG	1 cut(s)	1707
SduI	GDGCHC	4 cut(s)	429, 1033, 1234, 1379
SfaNI	GCATC	4 cut(s)	360, 622, 1073, 1436
SfcI	CTRYAG	1 cut(s)	1711
SgrAI	CRCCGGYG	1 cut(s)	1754
SinI	GGWCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	3 cut(s)	161, 438, 1755
SpeI	ACTAGT	1 cut(s)	1339
Sse9I	AATT	6 cut(s)	379, 561, 784, 1023, 1583, 1762
SsiI	CCGC	4 cut(s)	37, 635, 714, 1634
SspMI	CTAG	4 cut(s)	1034, 1340, 1580, 1846
SstI	GAGCTC	2 cut(s)	429, 1379
StyD4I	CCNGG	1 cut(s)	1705
StyI	CCWWGG	2 cut(s)	721, 1222
TaaI	ACNGT	2 cut(s)	479, 863
TaiI	ACGT	3 cut(s)	288, 1304, 1441
TaqI	TCGA	5 cut(s)	518, 555, 593, 1344, 1357
TasI	AATT	6 cut(s)	379, 561, 784, 1023, 1583, 1762
TatI	WGTACW	2 cut(s)	513, 1312
TfiI	GAWTC	3 cut(s)	415, 575, 1732
Tru1I	TTAA	4 cut(s)	1370, 1640, 1788, 1836
Tru9I	TTAA	4 cut(s)	1370, 1640, 1788, 1836
TscAI	CASTG	3 cut(s)	999, 1512, 1561
TseFI	GTSAC	3 cut(s)	494, 883, 1434
TseI	GCWGC	7 cut(s)	443, 778, 1019, 1134, 1280, 1570, 1573
Tsp45I	GTSAC	3 cut(s)	494, 883, 1434
TspGWI	ACGGA	3 cut(s)	284, 559, 936
TspRI	CASTG	3 cut(s)	999, 1512, 1561
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	718
VspI	ATTAAT	1 cut(s)	1836
XapI	RAATTY	2 cut(s)	561, 784
XbaI	TCTAGA	1 cut(s)	1579
XceI	RCATGY	2 cut(s)	1017, 1171
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	4 cut(s)	1034, 1340, 1580, 1846
ZrmI	AGTACT	1 cut(s)	1314
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.