Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014516

Physical Location & Seq

Genomic Coordinates Reverse (-)

16518150 .. 16521579

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG096600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGCTCTTAAATTCCATACACAAACCCAACTTCCTCCTCCCCAAAATCATAGACCTCAAAGACTTCACCTACGCCTACACCCTCTTCTCTCACATCCCCGAACCCAATGGCTACGCTTTCAACGTCATGCTCCGTGGCCTAACCACCACTTGGCAAAAGTACCCACTTACTCTTCAACTCTATTACCGAATGAAGTCTCTGGGTGTGATGCCGGATAATTTCACCTACCCATTTCTCTTCATTGCGTGTTGGAATCTCTCGGAGCTTAATCATGGCCGTGCAGCACATTCCTCTGTGTTGAAGACTGGGTTGGATGGTGATGGTCATGTGACTCACTCTCTGATCACAATGTACTCGATGTGTGGGGACCTGGGTTATGCACGGAAGGTGTTCGATGAAATTCCCCAGAGAGATTCGGTGTCGTGGAACTCGATGATTTCCGGGTATACGAAGATGGGGCGTGCAGGGGATGCGGTGGGGTTGTTTGGGGAGATGAGGGAGGCTGGATTTGAGCCGAATGAGATGACTCTGGTGAGTGTTCTCGGGGCGTGCGGGGACCTTGGGGATTTGAGCTTGGGGAGGTGGGTGGAGGATTTTGTTGTTGAGAAAAAGTTGCAGCTGAATTCTTATTTGGGGTCTGCTTTGATTGGTATGTATGGAAAGTGTGGTGATTTGTGTTCGGCAAGGAGGGTGTTTGACAGTATGAAGAAAAAGGATCGCGTCACTTGGAATGCCATGATTACAGGGTATGCTCAAAACGGAATGTCAGATGAAGCAATGGTGCTTTTTGATGGCATGAAAGAATCAGGTGTTATCCCTGATAAAATCACACTGGTTGGAATGTTGTCTGCATGTGCTGCAATTGGTGCCCTAGATTTGGGGAGATGGATTGACAAATATGCATCTGAAAGGGACTTCCAACATGACATTTATGTTGCTACTGCATTAGTTGATATGTATGCTAAGTGTGGCAGCTTAGCCAATGCTCTAAGAGTTTTTGAAGACATGCCCCAGAAAAATGAGGTTTCTTGGAATGCCATGATATCTGCCCTTGCTTTCCATGGGAGAGCCCATGAAGCAATATCCCTATTTGAGCGTATGACAGAAGAAGTTGGGGCTGCTCGGCCAAATGACATCACGTTTGTCGCAGTACTTTCTGCGTGTGTTCATGTTGGACTAGTCGATGAGGGTCGTCGATTGTTTGATTTAATGAGCTCATCATTTGGGCTGGTTCCAAAAGTAGAGCATTATTCTTGCATGGTTGACCTTTTGTCACGTGCAGGACGCGTACATGAAGCTTGGGATTTCATCAAGAAAATGCCTGAAAAACCAGATGAAGTTACACTGGGAGCGTTACTTGGTGCCTGTCGGAAATGTGGAAATGTAGATATCACTGAACAGGTAGTGCAGCTGCTTCTAGAATTGGAGCCTTCAAATTCCGGAAACTATGTTATCTCATCAAAGATCTATGCGGGCTTAAAAATGTGGGATGACTCAGCAAGGATGAGAGTGTTGATGAGACAAAGGGGTGTCAGCAAGACTCCTGGCTGTAGCTGGATTGAGAAAGAGAATCAACTTCATGAGTTTCACGCCGGTGATAATTTAGAAGAGATCTCTCAAGTACTTAAAGTATTATATGAGGATTTGAAGGATGAAGGTTACATACCAAACATTAATGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

561

Amino Acids

62.6

Weight (kDa)

5.6

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	138 - 184	4.9e-11	PPR repeat family
PPR	PF01535	140 - 170	5.1e-09	PPR repeat
PPR_2	PF13041	239 - 286	1.2e-12	PPR repeat family
PPR_1	PF12854	239 - 267	1.3e-06	PPR repeat
PPR	PF01535	241 - 271	1.9e-10	PPR repeat
PPR_2	PF13041	340 - 389	4.4e-08	PPR repeat family
PPR	PF01535	342 - 369	2.9e-07	PPR repeat
E_motif	PF20431	461 - 521	9.3e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34400
fragaria_vesca	FvH4_4g07550 FvH4_4g07550
malus_domestica	MD13G1244600.v1.1
prunus_persica	Prupe.1G079000_v2.0.a1
pyrus_communis	pycom13g21590
rosa_chinensis	RchiOBHm_Chr4g0400141
rosa_laevigata	RLG00000009209
rosa_multiflora	Rmu_sc0000037.1_g000017 Rmu_sc0023757.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345110
rosa_rugosa	Rorug04G0022600 Rorug04G0022600 Rorug04G0022700
rosa_samantha	Rh4BG096600 Rh4CG107900
rosa_wichuraiana	Rw4G008190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	866, 1361
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	2 cut(s)	720, 1287
AccIII	TCCGGA	1 cut(s)	1439
AciI	CCGC	3 cut(s)	473, 552, 1472
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	2 cut(s)	274, 1124
AcsI	RAATTY	4 cut(s)	10, 399, 622, 1435
AcvI	CACGTG	1 cut(s)	1277
AfaI	GTAC	5 cut(s)	161, 353, 1152, 1290, 1623
AfiI	CCNNNNNNNGG	2 cut(s)	150, 877
AflIII	ACRYGT	1 cut(s)	1285
AgsI	TTSAA	6 cut(s)	121, 176, 301, 1001, 1434, 1648
AhdI	GACNNNNNGTC	1 cut(s)	1270
AhlI	ACTAGT	1 cut(s)	1177
AjnI	CCWGG	2 cut(s)	369, 1543
AjuI	GAANNNNNNNTTGG	4 cut(s)	293, 325, 614, 646
AleI	CACNNNNGTG	1 cut(s)	1593
AluBI	AGCT	8 cut(s)	265, 573, 619, 975, 1215, 1298, 1411, 1554
AluI	AGCT	8 cut(s)	265, 573, 619, 975, 1215, 1298, 1411, 1554
Alw21I	GWGCWC	1 cut(s)	1217
Alw26I	GTCTC	2 cut(s)	201, 1513
AlwI	GGATC	1 cut(s)	723
Ama87I	CYCGRG	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	1439
AoxI	GGCC	3 cut(s)	136, 274, 1124
ApeKI	GCWGC	7 cut(s)	281, 616, 857, 972, 1118, 1408, 1411
ApoI	RAATTY	4 cut(s)	10, 399, 622, 1435
ArsI	GACNNNNNNTTYG	2 cut(s)	1124, 1156
AseI	ATTAAT	1 cut(s)	1674
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	367, 556
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	6 cut(s)	58, 214, 329, 544, 680, 1607
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	367, 556
BaeGI	GKGCMC	1 cut(s)	871
BanI	GGYRCC	2 cut(s)	866, 1361
BanII	GRGCYC	2 cut(s)	1072, 1217
BarI	GAAGNNNNNNTAC	2 cut(s)	1647, 1679
BbrPI	CACGTG	1 cut(s)	1277
BbsI	GAAGAC	2 cut(s)	308, 1008
Bbv12I	GWGCWC	1 cut(s)	1217
BbvI	GCAGC	7 cut(s)	293, 628, 844, 984, 1105, 1398, 1420
BccI	CCATC	5 cut(s)	308, 314, 448, 785, 879
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	371, 1545
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	201, 1513
BcuI	ACTAGT	1 cut(s)	1177
BfaI	CTAG	3 cut(s)	872, 1178, 1418
BfmI	CTRYAG	1 cut(s)	1549
BglII	AGATCT	2 cut(s)	1464, 1611
BisI	GCNGC	7 cut(s)	282, 617, 858, 973, 1119, 1409, 1412
BlpI	GCTNAGC	1 cut(s)	976
BlsI	GCNGC	7 cut(s)	283, 618, 859, 974, 1120, 1410, 1413
BmcAI	AGTACT	2 cut(s)	1152, 1623
Bme1390I	CCNGG	3 cut(s)	371, 442, 1545
Bme18I	GGWCC	2 cut(s)	367, 556
BmeRI	GACNNNNNGTC	1 cut(s)	1270
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	367, 556
BmiI	GGNNCC	6 cut(s)	368, 557, 868, 1233, 1363, 1428
BmrFI	CCNGG	3 cut(s)	371, 442, 1545
BmrI	ACTGGG	2 cut(s)	315, 1355
BmsI	GCATC	3 cut(s)	198, 460, 911
BmuI	ACTGGG	2 cut(s)	315, 1355
BpiI	GAAGAC	2 cut(s)	308, 1008
Bpu1102I	GCTNAGC	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	1602
BpuMI	CCSGG	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	1277
BsaJI	CCNNGG	4 cut(s)	133, 370, 559, 1060
BsaWI	WCCGGW	1 cut(s)	1439
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 877
Bse118I	RCCGGY	1 cut(s)	1592
Bse1I	ACTGG	3 cut(s)	310, 837, 1350
Bse3DI	GCAATG	2 cut(s)	240, 783
BseAI	TCCGGA	1 cut(s)	1439
BseBI	CCWGG	2 cut(s)	371, 1545
BseDI	CCNNGG	4 cut(s)	133, 370, 559, 1060
BseGI	GGATG	6 cut(s)	93, 319, 475, 1495, 1509, 1657
BseLI	CCNNNNNNNGG	2 cut(s)	150, 877
BseMI	GCAATG	2 cut(s)	240, 783
BseMII	CTCAG	1 cut(s)	1509
BseNI	ACTGG	3 cut(s)	310, 837, 1350
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	871
BseXI	GCAGC	7 cut(s)	293, 628, 844, 984, 1105, 1398, 1420
BsgI	GTGCAG	4 cut(s)	300, 483, 1299, 1427
Bsh1236I	CGCG	2 cut(s)	720, 1287
BshFI	GGCC	3 cut(s)	138, 276, 1126
BshNI	GGYRCC	2 cut(s)	866, 1361
BsiHKAI	GWGCWC	1 cut(s)	1217
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	4 cut(s)	212, 441, 1440, 1593
BslFI	GGGAC	3 cut(s)	380, 569, 926
BslI	CCNNNNNNNGG	2 cut(s)	150, 877
BsmAI	GTCTC	2 cut(s)	201, 1513
BsmFI	GGGAC	3 cut(s)	380, 569, 926
BsmI	GAATGC	2 cut(s)	736, 1039
BsnI	GGCC	3 cut(s)	138, 276, 1126
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	871, 1072, 1217
Bsp13I	TCCGGA	1 cut(s)	1439
Bsp143I	GATC	4 cut(s)	342, 715, 1464, 1611
Bsp1720I	GCTNAGC	1 cut(s)	976
Bsp19I	CCATGG	1 cut(s)	1060
BspACI	CCGC	3 cut(s)	473, 552, 1472
BspANI	GGCC	3 cut(s)	138, 276, 1126
BspCNI	CTCAG	1 cut(s)	1508
BspEI	TCCGGA	1 cut(s)	1439
BspFNI	CGCG	2 cut(s)	720, 1287
BspHI	TCATGA	1 cut(s)	1579
BspLI	GGNNCC	6 cut(s)	368, 557, 868, 1233, 1363, 1428
BspPI	GGATC	1 cut(s)	723
BspT107I	GGYRCC	2 cut(s)	866, 1361
BsrDI	GCAATG	2 cut(s)	240, 783
BsrFI	RCCGGY	1 cut(s)	1592
BsrI	ACTGG	3 cut(s)	310, 837, 1350
BssAI	RCCGGY	1 cut(s)	1592
BssECI	CCNNGG	4 cut(s)	133, 370, 559, 1060
BssMI	GATC	4 cut(s)	342, 715, 1464, 1611
BssNAI	GTATAC	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	559, 1060
Bst1107I	GTATAC	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	371, 1545
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	4 cut(s)	89, 177, 242, 1602
BstAPI	GCANNNNNTGC	3 cut(s)	470, 857, 866
BstBAI	YACGTR	1 cut(s)	1277
BstC8I	GCNNGC	3 cut(s)	462, 550, 1474
BstDEI	CTNAG	4 cut(s)	963, 976, 989, 1495
BstDSI	CCRYGG	2 cut(s)	133, 1060
BstF5I	GGATG	6 cut(s)	93, 319, 475, 1495, 1509, 1657
BstFNI	CGCG	2 cut(s)	720, 1287
BstKTI	GATC	4 cut(s)	345, 718, 1467, 1614
BstMAI	GTCTC	2 cut(s)	201, 1513
BstMBI	GATC	4 cut(s)	342, 715, 1464, 1611
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 857, 866, 1076
BstNI	CCWGG	2 cut(s)	371, 1545
BstNSI	RCATGY	2 cut(s)	855, 1009
BstSCI	CCNGG	3 cut(s)	369, 440, 1543
BstSFI	CTRYAG	1 cut(s)	1549
BstSLI	GKGCMC	1 cut(s)	871
BstUI	CGCG	2 cut(s)	720, 1287
BstV1I	GCAGC	7 cut(s)	293, 628, 844, 984, 1105, 1398, 1420
BstV2I	GAAGAC	2 cut(s)	308, 1008
BstX2I	RGATCY	2 cut(s)	1464, 1611
BstYI	RGATCY	2 cut(s)	1464, 1611
BstZ17I	GTATAC	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	138, 276, 1126
BtgI	CCRYGG	2 cut(s)	133, 1060
BtsCI	GGATG	6 cut(s)	93, 319, 475, 1495, 1509, 1657
BtsIMutI	CAGTG	3 cut(s)	830, 1343, 1392
Cac8I	GCNNGC	3 cut(s)	462, 550, 1474
CciI	TCATGA	1 cut(s)	1579
Cfr10I	RCCGGY	1 cut(s)	1592
Cfr13I	GGNCC	2 cut(s)	367, 556
CseI	GACGC	2 cut(s)	709, 1293
Csp6I	GTAC	5 cut(s)	160, 352, 1151, 1289, 1622
CviQI	GTAC	5 cut(s)	160, 352, 1151, 1289, 1622
DdeI	CTNAG	4 cut(s)	963, 976, 989, 1495
DpnI	GATC	4 cut(s)	344, 717, 1466, 1613
DpnII	GATC	4 cut(s)	342, 715, 1464, 1611
DriI	GACNNNNNGTC	1 cut(s)	1270
EaeI	YGGCCR	2 cut(s)	274, 1124
Eam1104I	CTCTTC	4 cut(s)	89, 177, 242, 1602
Eam1105I	GACNNNNNGTC	1 cut(s)	1270
EarI	CTCTTC	4 cut(s)	89, 177, 242, 1602
Ecl136II	GAGCTC	1 cut(s)	1215
Eco130I	CCWWGG	2 cut(s)	559, 1060
Eco24I	GRGCYC	2 cut(s)	1072, 1217
Eco32I	GATATC	2 cut(s)	1044, 1390
Eco47I	GGWCC	2 cut(s)	367, 556
Eco53kI	GAGCTC	1 cut(s)	1215
Eco72I	CACGTG	1 cut(s)	1277
Eco88I	CYCGRG	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	1215
EcoO109I	RGGNCCY	2 cut(s)	367, 556
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	369, 1543
EcoRV	GATATC	2 cut(s)	1044, 1390
EcoT14I	CCWWGG	2 cut(s)	559, 1060
EcoT22I	ATGCAT	1 cut(s)	904
EcoT38I	GRGCYC	2 cut(s)	1072, 1217
ErhI	CCWWGG	2 cut(s)	559, 1060
FaqI	GGGAC	3 cut(s)	380, 569, 926
FauI	CCCGC	2 cut(s)	545, 1465
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	7 cut(s)	282, 617, 858, 973, 1119, 1409, 1412
FokI	GGATG	6 cut(s)	80, 326, 482, 1502, 1516, 1664
FriOI	GRGCYC	2 cut(s)	1072, 1217
Fsp4HI	GCNGC	7 cut(s)	282, 617, 858, 973, 1119, 1409, 1412
FspBI	CTAG	3 cut(s)	872, 1178, 1418
GluI	GCNGC	7 cut(s)	282, 617, 858, 973, 1119, 1409, 1412
HaeIII	GGCC	3 cut(s)	138, 276, 1126
HapII	CCGG	4 cut(s)	212, 441, 1440, 1593
HgaI	GACGC	2 cut(s)	709, 1293
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HindIII	AAGCTT	1 cut(s)	1296
HinfI	GANTC	8 cut(s)	253, 331, 413, 526, 803, 1493, 1540, 1570
HpaII	CCGG	4 cut(s)	212, 441, 1440, 1593
HphI	GGTGA	6 cut(s)	58, 214, 329, 544, 680, 1607
Hpy166II	GTNNAC	2 cut(s)	447, 1264
Hpy188I	TCNGA	5 cut(s)	262, 342, 769, 907, 1371
Hpy188III	TCNNGA	4 cut(s)	1312, 1418, 1440, 1580
Hpy8I	GTNNAC	2 cut(s)	447, 1264
Hpy99I	CGWCG	1 cut(s)	1197
HpyAV	CCTTC	4 cut(s)	379, 1440, 1642, 1649
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	3 cut(s)	123, 1139, 1276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 857, 866, 1076
HpyF3I	CTNAG	4 cut(s)	963, 976, 989, 1495
HpySE526I	ACGT	3 cut(s)	123, 1139, 1276
Kpn2I	TCCGGA	1 cut(s)	1439
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	342, 715, 1464, 1611
LmnI	GCTCC	4 cut(s)	135, 262, 1349, 1426
Lsp1109I	GCAGC	7 cut(s)	293, 628, 844, 984, 1105, 1398, 1420
LweI	GCATC	3 cut(s)	198, 460, 911
MaeI	CTAG	3 cut(s)	872, 1178, 1418
MaeII	ACGT	3 cut(s)	123, 1139, 1276
MaeIII	GTNAC	6 cut(s)	328, 721, 1272, 1339, 1353, 1658
MalI	GATC	4 cut(s)	344, 717, 1466, 1613
MboI	GATC	4 cut(s)	342, 715, 1464, 1611
MboII	GAAGA	9 cut(s)	76, 164, 229, 313, 463, 718, 1013, 1118, 1619
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	2 cut(s)	1464, 1611
MhlI	GDGCHC	3 cut(s)	871, 1072, 1217
MluCI	AATT	8 cut(s)	10, 217, 399, 622, 861, 1421, 1435, 1600
MluI	ACGCGT	1 cut(s)	1285
MlyI	GAGTC	4 cut(s)	325, 520, 1487, 1534
MmeI	TCCRAC	6 cut(s)	230, 291, 817, 943, 1153, 1349
Mph1103I	ATGCAT	1 cut(s)	904
MroI	TCCGGA	1 cut(s)	1439
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	6 cut(s)	8, 267, 1208, 1478, 1626, 1674
MslI	CAYNNNNRTG	2 cut(s)	276, 1593
MspA1I	CMGCKG	2 cut(s)	619, 1411
MspI	CCGG	4 cut(s)	212, 441, 1440, 1593
MspR9I	CCNGG	3 cut(s)	371, 442, 1545
MunI	CAATTG	1 cut(s)	861
Mva1269I	GAATGC	2 cut(s)	736, 1039
MvaI	CCWGG	2 cut(s)	371, 1545
MvnI	CGCG	2 cut(s)	720, 1287
MwoI	GCNNNNNNNGC	4 cut(s)	470, 857, 866, 1076
NciI	CCSGG	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	1060
NdeII	GATC	4 cut(s)	342, 715, 1464, 1611
NlaIV	GGNNCC	6 cut(s)	368, 557, 868, 1233, 1363, 1428
NmeAIII	GCCGAG	1 cut(s)	1102
NmuCI	GTSAC	3 cut(s)	328, 721, 1272
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	2 cut(s)	855, 1009
OliI	CACNNNNGTG	1 cut(s)	1593
PagI	TCATGA	1 cut(s)	1579
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 428
PctI	GAATGC	2 cut(s)	736, 1039
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	4 cut(s)	253, 413, 803, 1570
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	7 cut(s)	283, 618, 859, 974, 1120, 1410, 1413
PleI	GAGTC	4 cut(s)	325, 520, 1487, 1534
PmaCI	CACGTG	1 cut(s)	1277
PmlI	CACGTG	1 cut(s)	1277
PpsI	GAGTC	4 cut(s)	325, 520, 1487, 1534
Ppu21I	YACGTR	1 cut(s)	1277
PpuMI	RGGWCCY	2 cut(s)	367, 556
PshBI	ATTAAT	1 cut(s)	1674
Psp124BI	GAGCTC	1 cut(s)	1217
Psp5II	RGGWCCY	2 cut(s)	367, 556
Psp6I	CCWGG	2 cut(s)	369, 1543
PspCI	CACGTG	1 cut(s)	1277
PspGI	CCWGG	2 cut(s)	369, 1543
PspN4I	GGNNCC	6 cut(s)	368, 557, 868, 1233, 1363, 1428
PspPI	GGNCC	2 cut(s)	367, 556
PspPPI	RGGWCCY	2 cut(s)	367, 556
PsuI	RGATCY	2 cut(s)	1464, 1611
PvuII	CAGCTG	2 cut(s)	619, 1411
RsaI	GTAC	5 cut(s)	161, 353, 1152, 1290, 1623
RsaNI	GTAC	5 cut(s)	160, 352, 1151, 1289, 1622
RseI	CAYNNNNRTG	2 cut(s)	276, 1593
SacI	GAGCTC	1 cut(s)	1217
SaqAI	TTAA	6 cut(s)	8, 267, 1208, 1478, 1626, 1674
SatI	GCNGC	7 cut(s)	282, 617, 858, 973, 1119, 1409, 1412
Sau3AI	GATC	4 cut(s)	342, 715, 1464, 1611
Sau96I	GGNCC	2 cut(s)	367, 556
ScaI	AGTACT	2 cut(s)	1152, 1623
SchI	GAGTC	4 cut(s)	325, 520, 1487, 1534
ScrFI	CCNGG	3 cut(s)	371, 442, 1545
SduI	GDGCHC	3 cut(s)	871, 1072, 1217
SfaNI	GCATC	3 cut(s)	198, 460, 911
SfcI	CTRYAG	1 cut(s)	1549
SgrAI	CRCCGGYG	1 cut(s)	1592
SinI	GGWCC	2 cut(s)	367, 556
SmiMI	CAYNNNNRTG	2 cut(s)	276, 1593
SmlI	CTYRAG	1 cut(s)	1617
SmoI	CTYRAG	1 cut(s)	1617
SpeI	ACTAGT	1 cut(s)	1177
Sse9I	AATT	8 cut(s)	10, 217, 399, 622, 861, 1421, 1435, 1600
SsiI	CCGC	3 cut(s)	473, 552, 1472
SspMI	CTAG	3 cut(s)	872, 1178, 1418
SstI	GAGCTC	1 cut(s)	1217
StyD4I	CCNGG	3 cut(s)	369, 440, 1543
StyI	CCWWGG	2 cut(s)	559, 1060
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	3 cut(s)	126, 1142, 1279
TaqI	TCGA	5 cut(s)	356, 393, 431, 1182, 1195
TasI	AATT	8 cut(s)	10, 217, 399, 622, 861, 1421, 1435, 1600
TatI	WGTACW	3 cut(s)	351, 1150, 1621
TfiI	GAWTC	4 cut(s)	253, 413, 803, 1570
Tru1I	TTAA	6 cut(s)	8, 267, 1208, 1478, 1626, 1674
Tru9I	TTAA	6 cut(s)	8, 267, 1208, 1478, 1626, 1674
TscAI	CASTG	3 cut(s)	837, 1350, 1399
TseFI	GTSAC	3 cut(s)	328, 721, 1272
TseI	GCWGC	7 cut(s)	281, 616, 857, 972, 1118, 1408, 1411
Tsp45I	GTSAC	3 cut(s)	328, 721, 1272
TspGWI	ACGGA	3 cut(s)	122, 397, 774
TspRI	CASTG	3 cut(s)	837, 1350, 1399
Van91I	CCANNNNNTGG	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	367, 556
VspI	ATTAAT	1 cut(s)	1674
XapI	RAATTY	4 cut(s)	10, 399, 622, 1435
XbaI	TCTAGA	1 cut(s)	1417
XceI	RCATGY	2 cut(s)	855, 1009
XmiI	GTMKAC	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	3 cut(s)	872, 1178, 1418
ZrmI	AGTACT	2 cut(s)	1152, 1623
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.